Wall clock time and date at job start Tue Mar 31 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47504 * 2 1 4 4 C 1.53006 * 109.46893 * 120.00250 * 2 1 3 5 5 C 1.50700 * 109.46953 * 294.99885 * 4 2 1 6 6 H 1.08001 * 120.00021 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00124 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99601 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47525 * 119.99969 * 9 7 5 12 12 H 1.48507 * 109.47281 * 240.00087 * 9 7 5 13 13 C 1.52999 * 109.47073 * 239.99790 * 2 1 3 14 14 N 1.46901 * 109.47016 * 65.00605 * 13 2 1 15 15 C 1.46899 * 111.00007 * 179.97438 * 14 13 2 16 16 H 1.08994 * 109.47201 * 325.00320 * 15 14 13 17 17 C 1.53007 * 109.46829 * 84.99925 * 15 14 13 18 18 C 1.50704 * 109.47034 * 204.99768 * 15 14 13 19 19 C 1.38817 * 120.80936 * 314.71757 * 18 15 14 20 20 F 1.35105 * 120.43082 * 0.25464 * 19 18 15 21 21 C 1.38453 * 119.13995 * 180.27233 * 19 18 15 22 22 N 1.31849 * 120.78049 * 0.02562 * 21 19 18 23 23 C 1.31843 * 121.77480 * 359.97438 * 22 21 19 24 24 C 1.38453 * 120.78622 * 0.02562 * 23 22 21 25 25 F 1.35101 * 120.43503 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47504 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47030 * 300.00369 * 1 2 3 28 28 H 1.09003 * 109.47032 * 59.99711 * 1 2 3 29 29 H 1.09002 * 109.47072 * 54.99694 * 4 2 1 30 30 H 1.09003 * 109.46959 * 174.99813 * 4 2 1 31 31 H 0.96998 * 119.99477 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47156 * 305.00192 * 13 2 1 33 33 H 1.09007 * 109.47014 * 185.00321 * 13 2 1 34 34 H 1.00901 * 110.99497 * 303.95121 * 14 13 2 35 35 H 1.09004 * 109.46908 * 299.99736 * 17 15 14 36 36 H 1.09001 * 109.47004 * 59.99790 * 17 15 14 37 37 H 1.08999 * 109.46835 * 179.97438 * 17 15 14 38 38 H 1.07994 * 119.60733 * 180.02562 * 21 19 18 39 39 H 1.08007 * 119.61215 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9931 -0.4018 3.7283 8 7 2.6762 -1.5189 3.8512 9 14 1.4995 0.5632 5.2496 10 1 0.7431 1.7749 4.8434 11 1 0.6457 -0.2856 6.1190 12 1 2.7179 0.9681 5.9960 13 6 2.0399 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6265 -3.6671 16 1 3.0894 -1.0976 -3.4737 17 6 1.1139 -1.6918 -4.0943 18 6 2.2765 0.3929 -4.7668 19 6 1.2882 1.3396 -4.9990 20 9 0.1730 1.3658 -4.2367 21 6 1.4599 2.2564 -6.0222 22 7 2.5450 2.2366 -6.7709 23 6 3.5043 1.3525 -6.5798 24 6 3.4042 0.4041 -5.5762 25 9 4.3913 -0.4988 -5.3870 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6052 -1.7199 1.2952 30 1 3.1263 -0.7996 1.2056 31 1 2.9234 -1.8418 4.7318 32 1 1.6053 -1.7198 -1.2951 33 1 3.1263 -0.7996 -1.2055 34 1 0.6529 0.1793 -2.4753 35 1 1.0050 -2.4291 -3.2989 36 1 0.1502 -1.2206 -4.2876 37 1 1.4657 -2.1841 -5.0009 38 1 0.6959 2.9965 -6.2093 39 1 4.3786 1.3684 -7.2137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602657571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:19 Heat of formation + Delta-G solvation = -71.763061 kcal Electronic energy + Delta-G solvation = -22302.052757 eV Core-core repulsion = 18687.041579 eV Total energy + Delta-G solvation = -3615.011178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.34101 -49.26133 -40.30499 -37.72136 -35.16246 -32.73089 -31.54823 -30.96677 -29.25176 -26.83081 -25.62693 -24.69851 -23.80669 -22.47708 -21.36687 -19.13016 -18.38175 -18.25644 -17.02312 -16.48485 -16.36885 -16.08202 -15.59043 -15.22769 -14.92064 -14.72682 -14.34242 -14.08244 -13.91497 -13.50378 -13.38649 -13.05800 -12.65121 -12.56204 -12.39683 -11.90109 -11.82152 -11.43868 -11.40237 -10.88631 -10.77694 -10.35387 -10.27373 -10.15460 -9.83469 -9.73225 -9.23454 -9.17212 -8.97244 -8.34309 -8.30783 -5.98517 -3.99575 0.42749 0.56206 3.08737 3.31800 3.39494 3.43605 3.45894 3.73497 3.91375 4.04895 4.22676 4.46326 4.56096 4.72318 4.88331 5.01530 5.21461 5.27374 5.37506 5.41208 5.53291 5.61492 5.72506 5.76143 5.89290 6.03318 6.19597 6.22633 6.42113 6.52290 6.86727 7.08323 7.13665 7.23301 7.29920 7.52746 7.68646 7.83778 8.01590 8.45348 9.06890 9.63990 11.13060 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.003407 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.243658 B = 8217.044980 C = 8505.078464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.684 5.684 15 C 0.117 3.883 16 H 0.099 0.901 17 C -0.178 4.178 18 C -0.090 4.090 19 C 0.099 3.901 20 F -0.114 7.114 21 C 0.060 3.940 22 N -0.435 5.435 23 C 0.061 3.939 24 C 0.082 3.918 25 F -0.120 7.120 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.347 0.653 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.174 0.826 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 2.865 -22.179 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.063 4.063 14 N -0.317 5.317 15 C 0.007 3.993 16 H 0.117 0.883 17 C -0.237 4.237 18 C -0.100 4.100 19 C 0.077 3.923 20 F -0.092 7.092 21 C -0.098 4.098 22 N -0.142 5.142 23 C -0.097 4.097 24 C 0.059 3.941 25 F -0.098 7.098 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.168 0.832 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.191 0.809 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.149 3.760 -22.625 22.964 hybrid contribution -0.874 -1.103 1.770 2.261 sum -2.022 2.657 -20.855 21.121 Atomic orbital electron populations 1.21747 0.96595 1.00471 1.00366 1.21227 0.94946 1.00122 0.93976 0.91609 1.19114 0.96146 0.95374 0.90308 1.21269 1.34578 1.08262 0.90948 0.92495 1.25023 0.95322 0.95101 0.99124 1.69978 1.39138 1.21264 1.23281 0.86571 0.78266 0.80129 0.83256 1.19735 1.21114 1.21076 1.22207 1.00420 0.94653 0.89035 1.60677 1.20786 1.49777 1.00486 1.20377 1.00630 0.90128 0.88199 0.88261 1.22477 0.99347 0.99387 1.02509 1.20629 0.92918 0.98414 0.98059 1.18363 0.84586 0.97011 0.92365 1.91523 1.48542 1.95469 1.73667 1.22986 0.96903 0.98168 0.91753 1.67754 1.00358 1.21037 1.25032 1.22943 0.99242 0.91085 0.96464 1.18439 0.86496 0.91303 0.97816 1.91550 1.59009 1.64868 1.94374 0.93974 0.91748 0.94980 0.96705 0.96644 0.93151 0.95353 0.91293 0.83150 0.90967 0.91978 0.91919 0.80856 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.70 2.55 -90.62 -0.23 -1.93 16 3 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.06 1.11 4.94 -3.82 -0.02 1.09 16 14 N -0.68 -10.01 5.71 -107.95 -0.62 -10.62 16 15 C 0.12 1.45 2.65 -68.86 -0.18 1.27 16 16 H 0.10 1.27 7.03 -51.93 -0.37 0.91 16 17 C -0.18 -1.89 9.11 37.16 0.34 -1.55 16 18 C -0.09 -1.04 4.98 -104.19 -0.52 -1.56 16 19 C 0.10 1.08 7.07 -39.29 -0.28 0.80 16 20 F -0.11 -1.32 14.64 2.25 0.03 -1.28 16 21 C 0.06 0.57 11.17 -17.46 -0.20 0.37 16 22 N -0.43 -4.36 10.36 -13.14 -0.14 -4.50 16 23 C 0.06 0.56 11.17 -17.47 -0.20 0.37 16 24 C 0.08 0.86 7.29 -39.29 -0.29 0.57 16 25 F -0.12 -1.31 16.40 2.25 0.04 -1.27 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.30 6.95 -51.93 -0.36 0.93 16 28 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.47 7.44 -51.93 -0.39 0.08 16 33 H 0.07 1.21 8.06 -51.92 -0.42 0.79 16 34 H 0.35 4.95 5.08 -39.29 -0.20 4.75 16 35 H 0.07 0.79 7.45 -51.93 -0.39 0.41 16 36 H 0.06 0.64 7.77 -51.93 -0.40 0.24 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -30.19 327.90 -7.11 -37.30 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.33 Total: 0.23 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.75 Total: -15.29 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.02 Total: -41.33 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.07 Total: -2.55 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.19 -7.11 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602657571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.463 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds