Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47504 * 2 1 4 4 C 1.53006 * 109.46893 * 120.00250 * 2 1 3 5 5 C 1.50700 * 109.46953 * 294.99885 * 4 2 1 6 6 H 1.08001 * 120.00021 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00124 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99601 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00288 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47030 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47525 * 119.99969 * 9 7 5 12 12 H 1.48507 * 109.47281 * 240.00087 * 9 7 5 13 13 C 1.52999 * 109.47073 * 239.99790 * 2 1 3 14 14 N 1.46901 * 109.47016 * 65.00605 * 13 2 1 15 15 C 1.46899 * 111.00007 * 179.97438 * 14 13 2 16 16 H 1.08994 * 109.47201 * 325.00320 * 15 14 13 17 17 C 1.53007 * 109.46829 * 84.99925 * 15 14 13 18 18 C 1.50704 * 109.47034 * 204.99768 * 15 14 13 19 19 C 1.38817 * 120.80936 * 314.71757 * 18 15 14 20 20 F 1.35105 * 120.43082 * 0.25464 * 19 18 15 21 21 C 1.38453 * 119.13995 * 180.27233 * 19 18 15 22 22 N 1.31849 * 120.78049 * 0.02562 * 21 19 18 23 23 C 1.31843 * 121.77480 * 359.97438 * 22 21 19 24 24 C 1.38453 * 120.78622 * 0.02562 * 23 22 21 25 25 F 1.35101 * 120.43503 * 179.97438 * 24 23 22 26 26 H 1.08999 * 109.47504 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47030 * 300.00369 * 1 2 3 28 28 H 1.09003 * 109.47032 * 59.99711 * 1 2 3 29 29 H 1.09002 * 109.47072 * 54.99694 * 4 2 1 30 30 H 1.09003 * 109.46959 * 174.99813 * 4 2 1 31 31 H 0.96998 * 119.99477 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47156 * 305.00192 * 13 2 1 33 33 H 1.09007 * 109.47014 * 185.00321 * 13 2 1 34 34 H 1.00901 * 110.99497 * 303.95121 * 14 13 2 35 35 H 1.09004 * 109.46908 * 299.99736 * 17 15 14 36 36 H 1.09001 * 109.47004 * 59.99790 * 17 15 14 37 37 H 1.08999 * 109.46835 * 179.97438 * 17 15 14 38 38 H 1.07994 * 119.60733 * 180.02562 * 21 19 18 39 39 H 1.08007 * 119.61215 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9931 -0.4018 3.7283 8 7 2.6762 -1.5189 3.8512 9 14 1.4995 0.5632 5.2496 10 1 0.7431 1.7749 4.8434 11 1 0.6457 -0.2856 6.1190 12 1 2.7179 0.9681 5.9960 13 6 2.0399 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6265 -3.6671 16 1 3.0894 -1.0976 -3.4737 17 6 1.1139 -1.6918 -4.0943 18 6 2.2765 0.3929 -4.7668 19 6 1.2882 1.3396 -4.9990 20 9 0.1730 1.3658 -4.2367 21 6 1.4599 2.2564 -6.0222 22 7 2.5450 2.2366 -6.7709 23 6 3.5043 1.3525 -6.5798 24 6 3.4042 0.4041 -5.5762 25 9 4.3913 -0.4988 -5.3870 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6052 -1.7199 1.2952 30 1 3.1263 -0.7996 1.2056 31 1 2.9234 -1.8418 4.7318 32 1 1.6053 -1.7198 -1.2951 33 1 3.1263 -0.7996 -1.2055 34 1 0.6529 0.1793 -2.4753 35 1 1.0050 -2.4291 -3.2989 36 1 0.1502 -1.2206 -4.2876 37 1 1.4657 -2.1841 -5.0009 38 1 0.6959 2.9965 -6.2093 39 1 4.3786 1.3684 -7.2137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602657571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = -89.720647 kcal Electronic energy + Delta-G solvation = -22302.831457 eV Core-core repulsion = 18687.041579 eV Total energy + Delta-G solvation = -3615.789877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.15534 -50.09409 -41.08653 -38.96113 -36.65555 -34.54044 -32.84736 -31.71393 -30.40956 -28.69865 -26.97650 -25.79083 -24.68806 -24.15367 -22.35114 -20.76970 -19.22927 -19.10010 -18.53227 -17.79808 -17.28204 -16.92970 -16.63325 -16.49512 -16.38546 -15.83587 -15.65308 -15.27851 -14.76609 -14.62643 -14.44706 -14.27763 -14.12197 -13.92776 -13.44723 -13.27738 -13.26732 -12.92981 -12.76224 -12.62373 -12.40055 -12.19917 -11.93723 -11.54701 -11.12832 -11.04764 -10.89626 -10.61303 -10.54419 -9.98436 -9.49971 -8.18222 -6.27091 -0.32419 -0.25247 1.39466 1.40250 1.53097 2.32491 2.41649 2.68062 2.88415 3.02197 3.15490 3.30334 3.39599 3.61763 3.91835 4.01395 4.09181 4.18964 4.24919 4.40763 4.45362 4.49462 4.62161 4.67706 4.76398 4.82439 4.85111 4.99829 5.05206 5.22112 5.35747 5.44761 5.46613 5.54035 5.76650 5.87839 5.93808 6.29702 6.35916 6.55988 6.88847 7.41239 8.94042 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.003407 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.243658 B = 8217.044980 C = 8505.078464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.079 3.921 14 N -0.685 5.685 15 C 0.117 3.883 16 H 0.091 0.909 17 C -0.172 4.172 18 C -0.102 4.102 19 C 0.086 3.914 20 F -0.120 7.120 21 C 0.069 3.931 22 N -0.445 5.445 23 C 0.072 3.928 24 C 0.071 3.929 25 F -0.125 7.125 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.062 0.938 29 H -0.008 1.008 30 H -0.014 1.014 31 H 0.262 0.738 32 H 0.032 0.968 33 H 0.058 0.942 34 H 0.351 0.649 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.200 0.800 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 4.084 -23.425 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.050 4.050 14 N -0.319 5.319 15 C 0.006 3.994 16 H 0.109 0.891 17 C -0.231 4.231 18 C -0.112 4.112 19 C 0.064 3.936 20 F -0.098 7.098 21 C -0.089 4.089 22 N -0.152 5.152 23 C -0.087 4.087 24 C 0.049 3.951 25 F -0.103 7.103 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.011 0.989 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.173 0.827 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.217 0.783 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.972 4.987 -23.893 24.488 hybrid contribution -0.578 -1.482 2.086 2.623 sum -2.551 3.505 -21.807 22.234 Atomic orbital electron populations 1.21645 0.94900 1.00809 1.01001 1.21011 0.96276 0.98916 0.93194 0.92739 1.18998 0.94220 0.94661 0.92533 1.21662 1.34377 1.08510 0.92065 0.92151 1.25942 0.95265 0.96102 1.02627 1.70108 1.40330 1.22946 1.24214 0.85460 0.78061 0.78905 0.79011 1.18605 1.20460 1.20620 1.21882 0.99629 0.94626 0.88874 1.60570 1.21058 1.49804 1.00460 1.20376 1.00595 0.90868 0.87523 0.89107 1.22410 0.99056 0.98743 1.02886 1.20620 0.93776 0.98639 0.98142 1.18479 0.84468 0.97564 0.93073 1.91502 1.48803 1.95559 1.73950 1.23391 0.97104 0.97790 0.90580 1.67866 1.00734 1.21336 1.25281 1.23379 0.99681 0.89803 0.95796 1.18552 0.86236 0.91848 0.98427 1.91537 1.59167 1.65143 1.94484 0.93774 0.93498 0.91872 0.98934 0.99518 0.92948 0.94935 0.92351 0.82750 0.91482 0.91485 0.90542 0.78296 0.78112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.77 71.98 0.63 -3.96 16 2 C -0.08 -3.08 2.55 -10.79 -0.03 -3.10 16 3 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -29.98 8.41 25.60 0.22 -29.76 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.94 -57.30 13.29 21.45 0.28 -57.01 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.08 2.69 4.94 86.30 0.43 3.12 16 14 N -0.69 -19.51 5.71 -495.43 -2.83 -22.34 16 15 C 0.12 2.79 2.65 44.17 0.12 2.90 16 16 H 0.09 2.31 7.03 -2.39 -0.02 2.30 16 17 C -0.17 -3.44 9.11 71.98 0.66 -2.78 16 18 C -0.10 -2.21 4.98 -19.59 -0.10 -2.31 16 19 C 0.09 1.73 7.07 22.46 0.16 1.89 16 20 F -0.12 -2.56 14.64 44.97 0.66 -1.91 16 21 C 0.07 1.15 11.17 84.74 0.95 2.09 16 22 N -0.44 -7.83 10.36 -195.48 -2.02 -9.85 16 23 C 0.07 1.15 11.17 84.74 0.95 2.10 16 24 C 0.07 1.40 7.29 22.46 0.16 1.57 16 25 F -0.12 -2.61 16.40 44.97 0.74 -1.87 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.85 6.95 -2.38 -0.02 1.84 16 28 H 0.06 1.89 6.68 -2.39 -0.02 1.88 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.03 1.08 7.44 -2.39 -0.02 1.06 16 33 H 0.06 2.11 8.06 -2.38 -0.02 2.09 16 34 H 0.35 9.48 5.08 -89.69 -0.46 9.03 16 35 H 0.07 1.40 7.45 -2.38 -0.02 1.39 16 36 H 0.07 1.27 7.77 -2.39 -0.02 1.26 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -65.09 327.90 4.19 -60.89 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.61 Total: 11.40 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 4.73 Total: -26.03 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -4.57 Total: -89.21 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 1.40 Total: -3.78 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.09 4.19 -60.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602657571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.830 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds