Wall clock time and date at job start Tue Mar 31 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46985 * 2 1 4 4 N 1.46906 * 109.46868 * 119.99609 * 2 1 3 5 5 C 1.46897 * 110.99691 * 275.00239 * 4 2 1 6 6 C 1.53006 * 109.46718 * 180.02562 * 5 4 2 7 7 H 1.08996 * 109.46729 * 304.99815 * 6 5 4 8 8 C 1.53001 * 109.47288 * 65.00020 * 6 5 4 9 9 C 1.53007 * 109.47026 * 184.99834 * 6 5 4 10 10 C 1.50699 * 109.47153 * 175.00154 * 9 6 5 11 11 H 1.08000 * 119.99774 * 359.97438 * 10 9 6 12 12 C 1.37873 * 120.00083 * 180.02562 * 10 9 6 13 13 N 1.31516 * 120.00101 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47151 * 89.99532 * 14 12 10 16 16 H 1.48500 * 109.47063 * 209.99620 * 14 12 10 17 17 H 1.48503 * 109.47122 * 329.99544 * 14 12 10 18 18 C 1.50693 * 109.47222 * 239.99532 * 2 1 3 19 19 C 1.38822 * 120.80904 * 105.00369 * 18 2 1 20 20 F 1.35095 * 120.42991 * 359.97438 * 19 18 2 21 21 C 1.38451 * 119.14055 * 179.97438 * 19 18 2 22 22 N 1.31854 * 120.78345 * 359.97438 * 21 19 18 23 23 C 1.31844 * 121.77138 * 0.02562 * 22 21 19 24 24 C 1.38453 * 120.78408 * 359.97438 * 23 22 21 25 25 F 1.35101 * 120.42741 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47357 * 300.00520 * 1 2 3 28 28 H 1.09004 * 109.47001 * 60.00514 * 1 2 3 29 29 H 1.00893 * 110.99696 * 151.04844 * 4 2 1 30 30 H 1.09005 * 109.47589 * 299.99710 * 5 4 2 31 31 H 1.08998 * 109.47535 * 60.00269 * 5 4 2 32 32 H 1.09002 * 109.46582 * 300.00107 * 8 6 5 33 33 H 1.09004 * 109.46955 * 59.99497 * 8 6 5 34 34 H 1.08997 * 109.47245 * 179.97438 * 8 6 5 35 35 H 1.09005 * 109.46990 * 295.00033 * 9 6 5 36 36 H 1.09002 * 109.47129 * 54.99835 * 9 6 5 37 37 H 0.96994 * 120.00229 * 180.02562 * 13 12 10 38 38 H 1.07998 * 119.60978 * 180.02562 * 21 19 18 39 39 H 1.08004 * 119.60363 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1996 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5327 3.5743 7 1 1.9708 -1.4080 3.7501 8 6 4.0398 -0.9776 3.3320 9 6 2.5438 0.3855 4.7971 10 6 2.9328 -0.3934 6.0271 11 1 3.1910 -1.4388 5.9450 12 6 2.9579 0.2284 7.2575 13 7 2.6430 1.5013 7.3575 14 14 3.4394 -0.7373 8.7823 15 1 4.9079 -0.6455 8.9831 16 1 2.7417 -0.1737 9.9659 17 1 3.0513 -2.1603 8.6101 18 6 2.0324 -0.7105 -1.2303 19 6 2.5604 0.0031 -2.2977 20 9 2.6323 1.3513 -2.2507 21 6 3.0124 -0.6849 -3.4109 22 7 2.9460 -2.0007 -3.4639 23 6 2.4511 -2.7114 -2.4699 24 6 1.9794 -2.0944 -1.3237 25 9 1.4733 -2.8298 -0.3097 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.9172 -1.1204 1.0289 30 1 2.7588 1.0464 2.1183 31 1 1.0870 0.6164 2.5525 32 1 4.0770 -1.6317 2.4608 33 1 4.6650 -0.1022 3.1560 34 1 4.4059 -1.5153 4.2065 35 1 3.2368 1.2153 4.6582 36 1 1.5322 0.7732 4.9173 37 1 2.6610 1.9389 8.2230 38 1 3.4250 -0.1374 -4.2454 39 1 2.4131 -3.7878 -2.5507 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602657572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:22 Heat of formation + Delta-G solvation = -69.759471 kcal Electronic energy + Delta-G solvation = -22306.767805 eV Core-core repulsion = 18691.843509 eV Total energy + Delta-G solvation = -3614.924296 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.43611 -49.14007 -40.39666 -37.64434 -35.16179 -32.71815 -31.49858 -31.02722 -29.39262 -26.81199 -25.83902 -24.56028 -23.85954 -22.49238 -21.00463 -19.12633 -18.38860 -18.33432 -17.13430 -16.56861 -16.32395 -16.12190 -15.63707 -15.48350 -14.77977 -14.65326 -14.28028 -13.97273 -13.91160 -13.56088 -13.43925 -12.94242 -12.59025 -12.50836 -12.15849 -12.03962 -11.80038 -11.52290 -11.24121 -10.87071 -10.76684 -10.36498 -10.26677 -10.19720 -9.87848 -9.74278 -9.29094 -9.17141 -8.97588 -8.33864 -8.30850 -5.98085 -3.99304 0.34657 0.44802 3.01559 3.32888 3.38613 3.39337 3.42844 3.66830 3.86719 3.98614 4.09474 4.44259 4.51019 4.66956 4.99029 5.12449 5.24754 5.29998 5.37811 5.39658 5.62012 5.70818 5.76099 5.81895 6.00909 6.10612 6.18576 6.21649 6.42232 6.52418 6.87041 7.07578 7.13914 7.22353 7.23640 7.48071 7.68708 7.84092 8.01879 8.45548 9.06947 9.64215 11.13454 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.003387 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.130297 B = 8264.470378 C = 8582.391084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.122 3.878 3 H 0.064 0.936 4 N -0.676 5.676 5 C 0.064 3.936 6 C -0.083 4.083 7 H 0.067 0.933 8 C -0.134 4.134 9 C 0.028 3.972 10 C -0.513 4.513 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.120 4.120 19 C 0.084 3.916 20 F -0.119 7.119 21 C 0.059 3.941 22 N -0.431 5.431 23 C 0.057 3.943 24 C 0.104 3.896 25 F -0.099 7.099 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.339 0.661 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.175 0.825 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 -4.508 -22.160 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 H 0.081 0.919 4 N -0.308 5.308 5 C -0.064 4.064 6 C -0.102 4.102 7 H 0.086 0.914 8 C -0.191 4.191 9 C -0.009 4.009 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.130 4.130 19 C 0.062 3.938 20 F -0.097 7.097 21 C -0.100 4.100 22 N -0.138 5.138 23 C -0.101 4.101 24 C 0.082 3.918 25 F -0.077 7.077 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.158 0.842 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.192 0.808 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.705 -5.016 -22.556 23.170 hybrid contribution 0.701 0.743 1.631 1.925 sum -1.003 -4.273 -20.925 21.380 Atomic orbital electron populations 1.21785 0.92625 1.03015 1.01949 1.20421 0.97000 0.95704 0.85682 0.91861 1.60781 1.33479 1.33449 1.03101 1.22243 1.00656 0.93337 0.90164 1.21222 0.95341 0.99538 0.94102 0.91445 1.21744 0.97344 0.99882 1.00173 1.19109 0.97074 0.94168 0.90555 1.21229 1.45298 0.96545 0.92056 0.92550 1.25018 0.95577 0.94892 0.99047 1.69963 1.49140 1.10062 1.24508 0.86627 0.78496 0.80281 0.82806 1.20768 1.21296 1.19856 1.20825 1.00828 0.93380 0.97928 1.18506 1.01230 0.78377 0.95714 1.91557 1.93897 1.27849 1.96421 1.22958 0.99481 0.90473 0.97070 1.67763 1.12292 1.06525 1.27195 1.23070 0.97126 1.01755 0.88187 1.18433 0.97758 0.88394 0.87250 1.91658 1.83613 1.75499 1.56950 0.91516 0.91087 0.92743 0.84202 0.95596 0.91059 0.95140 0.94043 0.91720 0.96768 0.96617 0.93090 0.80818 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.36 37.16 0.35 -1.24 16 2 C 0.12 1.52 2.66 -68.86 -0.18 1.34 16 3 H 0.06 0.82 7.03 -51.93 -0.37 0.45 16 4 N -0.68 -9.82 5.11 -107.95 -0.55 -10.37 16 5 C 0.06 1.09 4.94 -3.82 -0.02 1.08 16 6 C -0.08 -1.68 2.55 -90.61 -0.23 -1.92 16 7 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 8 C -0.13 -2.50 8.78 37.16 0.33 -2.17 16 9 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 10 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 11 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 14 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 18 C -0.12 -1.33 4.69 -104.20 -0.49 -1.82 16 19 C 0.08 0.84 7.29 -39.29 -0.29 0.56 16 20 F -0.12 -1.26 16.40 2.25 0.04 -1.22 16 21 C 0.06 0.51 11.17 -17.46 -0.20 0.31 16 22 N -0.43 -4.10 10.36 -13.14 -0.14 -4.23 16 23 C 0.06 0.51 11.17 -17.47 -0.20 0.32 16 24 C 0.10 1.10 6.89 -39.29 -0.27 0.83 16 25 F -0.10 -1.20 15.57 2.25 0.04 -1.17 16 26 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16 27 H 0.07 0.87 7.45 -51.93 -0.39 0.48 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.34 4.85 6.35 -39.30 -0.25 4.60 16 30 H 0.03 0.44 8.06 -51.93 -0.42 0.03 16 31 H 0.07 1.24 7.44 -51.93 -0.39 0.85 16 32 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.18 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -30.05 329.35 -7.03 -37.08 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.38 Total: -0.27 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.71 Total: -15.25 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.05 Total: -40.83 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.07 Total: -2.39 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.05 -7.03 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602657572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.680 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds