Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46985 * 2 1 4 4 N 1.46906 * 109.46868 * 119.99609 * 2 1 3 5 5 C 1.46897 * 110.99691 * 275.00239 * 4 2 1 6 6 C 1.53006 * 109.46718 * 180.02562 * 5 4 2 7 7 H 1.08996 * 109.46729 * 304.99815 * 6 5 4 8 8 C 1.53001 * 109.47288 * 65.00020 * 6 5 4 9 9 C 1.53007 * 109.47026 * 184.99834 * 6 5 4 10 10 C 1.50699 * 109.47153 * 175.00154 * 9 6 5 11 11 H 1.08000 * 119.99774 * 359.97438 * 10 9 6 12 12 C 1.37873 * 120.00083 * 180.02562 * 10 9 6 13 13 N 1.31516 * 120.00101 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47151 * 89.99532 * 14 12 10 16 16 H 1.48500 * 109.47063 * 209.99620 * 14 12 10 17 17 H 1.48503 * 109.47122 * 329.99544 * 14 12 10 18 18 C 1.50693 * 109.47222 * 239.99532 * 2 1 3 19 19 C 1.38822 * 120.80904 * 105.00369 * 18 2 1 20 20 F 1.35095 * 120.42991 * 359.97438 * 19 18 2 21 21 C 1.38451 * 119.14055 * 179.97438 * 19 18 2 22 22 N 1.31854 * 120.78345 * 359.97438 * 21 19 18 23 23 C 1.31844 * 121.77138 * 0.02562 * 22 21 19 24 24 C 1.38453 * 120.78408 * 359.97438 * 23 22 21 25 25 F 1.35101 * 120.42741 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47357 * 300.00520 * 1 2 3 28 28 H 1.09004 * 109.47001 * 60.00514 * 1 2 3 29 29 H 1.00893 * 110.99696 * 151.04844 * 4 2 1 30 30 H 1.09005 * 109.47589 * 299.99710 * 5 4 2 31 31 H 1.08998 * 109.47535 * 60.00269 * 5 4 2 32 32 H 1.09002 * 109.46582 * 300.00107 * 8 6 5 33 33 H 1.09004 * 109.46955 * 59.99497 * 8 6 5 34 34 H 1.08997 * 109.47245 * 179.97438 * 8 6 5 35 35 H 1.09005 * 109.46990 * 295.00033 * 9 6 5 36 36 H 1.09002 * 109.47129 * 54.99835 * 9 6 5 37 37 H 0.96994 * 120.00229 * 180.02562 * 13 12 10 38 38 H 1.07998 * 119.60978 * 180.02562 * 21 19 18 39 39 H 1.08004 * 119.60363 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1996 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5327 3.5743 7 1 1.9708 -1.4080 3.7501 8 6 4.0398 -0.9776 3.3320 9 6 2.5438 0.3855 4.7971 10 6 2.9328 -0.3934 6.0271 11 1 3.1910 -1.4388 5.9450 12 6 2.9579 0.2284 7.2575 13 7 2.6430 1.5013 7.3575 14 14 3.4394 -0.7373 8.7823 15 1 4.9079 -0.6455 8.9831 16 1 2.7417 -0.1737 9.9659 17 1 3.0513 -2.1603 8.6101 18 6 2.0324 -0.7105 -1.2303 19 6 2.5604 0.0031 -2.2977 20 9 2.6323 1.3513 -2.2507 21 6 3.0124 -0.6849 -3.4109 22 7 2.9460 -2.0007 -3.4639 23 6 2.4511 -2.7114 -2.4699 24 6 1.9794 -2.0944 -1.3237 25 9 1.4733 -2.8298 -0.3097 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.9172 -1.1204 1.0289 30 1 2.7588 1.0464 2.1183 31 1 1.0870 0.6164 2.5525 32 1 4.0770 -1.6317 2.4608 33 1 4.6650 -0.1022 3.1560 34 1 4.4059 -1.5153 4.2065 35 1 3.2368 1.2153 4.6582 36 1 1.5322 0.7732 4.9173 37 1 2.6610 1.9389 8.2230 38 1 3.4250 -0.1374 -4.2454 39 1 2.4131 -3.7878 -2.5507 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602657572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = -87.445428 kcal Electronic energy + Delta-G solvation = -22307.534726 eV Core-core repulsion = 18691.843509 eV Total energy + Delta-G solvation = -3615.691217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.21687 -49.98431 -41.15477 -38.89996 -36.64557 -34.54385 -32.78321 -31.74564 -30.56177 -28.69954 -27.18815 -25.68595 -24.70346 -24.15049 -22.01110 -20.76898 -19.22144 -19.13540 -18.56438 -17.90960 -17.35218 -16.93665 -16.65527 -16.58549 -16.37869 -15.77427 -15.65793 -15.11070 -14.85174 -14.64430 -14.44996 -14.26750 -14.16186 -13.69579 -13.42432 -13.32646 -13.18068 -12.90535 -12.75389 -12.65635 -12.34224 -12.23733 -11.94155 -11.51922 -11.13551 -11.05464 -10.90306 -10.66544 -10.53799 -10.01091 -9.52607 -8.17842 -6.26911 -0.37709 -0.33149 1.40183 1.41095 1.52221 2.29430 2.41791 2.63040 2.84186 2.99799 3.15511 3.15871 3.33005 3.61028 3.92352 4.06853 4.10490 4.18917 4.30414 4.42522 4.47387 4.49918 4.64909 4.69896 4.72915 4.84675 4.88115 4.98279 5.20402 5.21748 5.34945 5.41667 5.45419 5.53931 5.76380 5.87843 5.93911 6.28243 6.30591 6.52040 6.88879 7.41425 8.94251 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.003387 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.130297 B = 8264.470378 C = 8582.391084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.122 3.878 3 H 0.059 0.941 4 N -0.673 5.673 5 C 0.078 3.922 6 C -0.074 4.074 7 H 0.058 0.942 8 C -0.126 4.126 9 C 0.034 3.966 10 C -0.529 4.529 11 H 0.061 0.939 12 C -0.002 4.002 13 N -0.935 5.935 14 Si 0.961 3.039 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.264 1.264 18 C -0.128 4.128 19 C 0.077 3.923 20 F -0.124 7.124 21 C 0.072 3.928 22 N -0.440 5.440 23 C 0.069 3.931 24 C 0.092 3.908 25 F -0.112 7.112 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.342 0.658 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.047 0.953 35 H -0.010 1.010 36 H -0.012 1.012 37 H 0.262 0.738 38 H 0.203 0.797 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -5.898 -23.596 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.012 3.988 3 H 0.077 0.923 4 N -0.306 5.306 5 C -0.051 4.051 6 C -0.093 4.093 7 H 0.077 0.923 8 C -0.184 4.184 9 C -0.004 4.004 10 C -0.567 4.567 11 H 0.079 0.921 12 C -0.199 4.199 13 N -0.576 5.576 14 Si 0.786 3.214 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.188 1.188 18 C -0.138 4.138 19 C 0.054 3.946 20 F -0.103 7.103 21 C -0.087 4.087 22 N -0.147 5.147 23 C -0.089 4.089 24 C 0.069 3.931 25 F -0.090 7.090 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.161 0.839 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.008 0.992 36 H 0.006 0.994 37 H 0.071 0.929 38 H 0.220 0.780 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.034 -6.419 -24.012 24.877 hybrid contribution 0.480 1.197 1.995 2.375 sum -0.554 -5.222 -22.017 22.635 Atomic orbital electron populations 1.21755 0.92139 1.02834 1.02297 1.20395 0.97390 0.95471 0.85522 0.92310 1.60688 1.33647 1.32944 1.03302 1.21924 0.99964 0.93172 0.90027 1.21002 0.96726 0.98182 0.93366 0.92337 1.21645 0.95721 1.00204 1.00786 1.18993 0.94531 0.94197 0.92660 1.21633 1.44969 0.96954 0.93139 0.92101 1.25942 0.95517 0.95879 1.02586 1.70097 1.50295 1.11803 1.25427 0.85510 0.78393 0.79069 0.78476 1.19871 1.20954 1.18774 1.20728 1.01631 0.93760 0.97631 1.18587 1.01779 0.78185 0.96005 1.91546 1.94009 1.28234 1.96470 1.23401 0.97877 0.90303 0.97093 1.67884 1.12672 1.06875 1.27275 1.23445 0.95439 1.02905 0.87116 1.18547 0.98724 0.88124 0.87666 1.91627 1.84011 1.75733 1.57611 0.91902 0.92100 0.91049 0.83879 0.95735 0.91776 0.91945 0.94117 0.93379 0.99199 0.99375 0.92945 0.77997 0.78187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.36 71.98 0.67 -2.34 16 2 C 0.12 2.95 2.66 44.17 0.12 3.07 16 3 H 0.06 1.49 7.03 -2.39 -0.02 1.47 16 4 N -0.67 -19.12 5.11 -495.43 -2.53 -21.65 16 5 C 0.08 2.68 4.94 86.31 0.43 3.11 16 6 C -0.07 -3.03 2.55 -10.79 -0.03 -3.05 16 7 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 8 C -0.13 -4.62 8.78 71.98 0.63 -3.99 16 9 C 0.03 1.78 4.45 29.85 0.13 1.91 16 10 C -0.53 -30.02 8.41 25.60 0.22 -29.80 16 11 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 12 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 13 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 14 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 18 C -0.13 -2.65 4.69 -19.59 -0.09 -2.74 16 19 C 0.08 1.39 7.29 22.46 0.16 1.56 16 20 F -0.12 -2.45 16.40 44.97 0.74 -1.71 16 21 C 0.07 1.04 11.17 84.74 0.95 1.99 16 22 N -0.44 -7.12 10.36 -195.48 -2.02 -9.15 16 23 C 0.07 1.06 11.17 84.74 0.95 2.01 16 24 C 0.09 1.77 6.89 22.46 0.15 1.93 16 25 F -0.11 -2.56 15.57 44.97 0.70 -1.86 16 26 H 0.06 1.47 7.81 -2.39 -0.02 1.45 16 27 H 0.06 1.49 7.45 -2.39 -0.02 1.47 16 28 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.34 9.32 6.35 -89.70 -0.57 8.75 16 30 H 0.02 0.85 8.06 -2.38 -0.02 0.83 16 31 H 0.06 2.29 7.44 -2.39 -0.02 2.27 16 32 H 0.06 1.88 6.68 -2.39 -0.02 1.86 16 33 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.05 1.90 6.95 -2.39 -0.02 1.89 16 35 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -64.92 329.35 4.44 -60.48 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.49 Total: 10.32 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 4.75 Total: -26.01 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -4.27 Total: -87.92 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 1.44 Total: -3.57 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.92 4.44 -60.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602657572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.967 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds