Wall clock time and date at job start Tue Mar 31 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47616 * 59.99495 * 9 7 5 11 11 H 1.48500 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46767 * 299.99523 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.46974 * 324.99713 * 15 14 13 17 17 C 1.53005 * 109.46974 * 84.99381 * 15 14 13 18 18 C 1.50700 * 109.47202 * 204.99592 * 15 14 13 19 19 C 1.38816 * 120.80897 * 314.71936 * 18 15 14 20 20 F 1.35099 * 120.42876 * 0.02562 * 19 18 15 21 21 C 1.38457 * 119.13483 * 179.77676 * 19 18 15 22 22 N 1.31847 * 120.78488 * 0.51024 * 21 19 18 23 23 C 1.31838 * 121.77465 * 359.73889 * 22 21 19 24 24 C 1.38459 * 120.78549 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.43456 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 0.97004 * 120.00063 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 33 33 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 34 34 H 1.00894 * 110.99853 * 56.03851 * 14 13 2 35 35 H 1.09008 * 109.46792 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.47371 * 300.00296 * 17 15 14 37 37 H 1.09000 * 109.46603 * 60.00671 * 17 15 14 38 38 H 1.08007 * 119.60540 * 180.24915 * 21 19 18 39 39 H 1.08001 * 119.61296 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9925 -0.4023 -3.7283 8 7 2.6757 -1.5193 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 2.0919 1.9228 -5.1871 11 1 1.9928 -0.1380 -6.4622 12 1 0.0190 0.6703 -5.3090 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 1 2.0807 -1.7078 3.5333 17 6 3.5684 -0.2065 3.9498 18 6 1.2492 -0.2286 4.8274 19 6 0.8875 1.0974 5.0226 20 9 1.3158 2.0558 4.1722 21 6 0.0779 1.4240 6.0973 22 7 -0.3398 0.4950 6.9344 23 6 -0.0126 -0.7732 6.7836 24 6 0.7899 -1.1777 5.7303 25 9 1.1212 -2.4790 5.5829 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9230 -1.8422 -4.7317 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 0.6528 0.1793 2.4753 35 1 3.9195 -0.6992 4.8565 36 1 4.2017 -0.4946 3.1107 37 1 3.6123 0.8744 4.0838 38 1 -0.2114 2.4527 6.2541 39 1 -0.3747 -1.5054 7.4901 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602657573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:25 Heat of formation + Delta-G solvation = -69.778959 kcal Electronic energy + Delta-G solvation = -22305.635579 eV Core-core repulsion = 18690.710438 eV Total energy + Delta-G solvation = -3614.925141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.43609 -49.14095 -40.39697 -37.64449 -35.16210 -32.71765 -31.49879 -31.02707 -29.39145 -26.81088 -25.83829 -24.55956 -23.85989 -22.49161 -21.00389 -19.12508 -18.38916 -18.33487 -17.13415 -16.56752 -16.32252 -16.12224 -15.63629 -15.48484 -14.77914 -14.65323 -14.28366 -13.97254 -13.91202 -13.56133 -13.43973 -12.94066 -12.58935 -12.50953 -12.15401 -12.03753 -11.80038 -11.52096 -11.23686 -10.88936 -10.74382 -10.37852 -10.26503 -10.19777 -9.87891 -9.74150 -9.29063 -9.17007 -8.98503 -8.33562 -8.30782 -5.97875 -3.99157 0.34633 0.44832 3.01578 3.34551 3.38596 3.38903 3.41458 3.66789 3.86730 3.98598 4.09516 4.44288 4.51068 4.66946 4.99054 5.12412 5.24795 5.30015 5.37908 5.39644 5.61981 5.70833 5.76148 5.81926 6.00928 6.10592 6.18594 6.21697 6.42300 6.52501 6.87080 7.07688 7.13977 7.22394 7.23668 7.48061 7.68613 7.84215 8.01958 8.45611 9.06856 9.64242 11.13619 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.029427 B = 0.003386 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.282617 B = 8267.030372 C = 8583.897790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.676 5.676 15 C 0.122 3.878 16 H 0.064 0.936 17 C -0.136 4.136 18 C -0.120 4.120 19 C 0.104 3.896 20 F -0.099 7.099 21 C 0.057 3.943 22 N -0.431 5.431 23 C 0.059 3.941 24 C 0.084 3.916 25 F -0.119 7.119 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.339 0.661 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.176 0.824 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 2.111 22.261 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.308 5.308 15 C 0.012 3.988 16 H 0.081 0.919 17 C -0.194 4.194 18 C -0.130 4.130 19 C 0.082 3.918 20 F -0.077 7.077 21 C -0.101 4.101 22 N -0.138 5.138 23 C -0.100 4.100 24 C 0.062 3.938 25 F -0.097 7.097 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.193 0.807 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.414 2.641 22.745 23.151 hybrid contribution -0.186 -0.697 -1.771 1.912 sum -3.600 1.944 20.974 21.370 Atomic orbital electron populations 1.21744 0.96714 1.00409 1.00271 1.21218 0.94829 1.00205 0.93945 0.91447 1.19100 0.96143 0.95342 0.90285 1.21195 1.34789 1.08271 0.90971 0.92601 1.25016 0.95308 0.95083 0.99096 1.69953 1.38990 1.21229 1.23506 0.86684 0.78859 0.80160 0.82458 1.20243 1.21375 1.20313 1.22243 1.00671 0.94350 0.89135 1.60783 1.19547 1.49986 1.00491 1.20419 0.94052 0.97686 0.86648 0.91864 1.21788 0.93695 1.02403 1.01495 1.20827 1.00716 0.92268 0.99155 1.18435 0.97280 0.85459 0.90656 1.91657 1.87259 1.60758 1.68050 1.23071 0.95782 1.00797 0.90492 1.67757 1.19586 1.00462 1.25970 1.22956 0.96476 0.93973 0.96570 1.18508 0.99196 0.79099 0.97025 1.91557 1.90651 1.32346 1.95169 0.94042 0.91721 0.95147 0.96627 0.96767 0.93029 0.95593 0.91062 0.84206 0.92748 0.91079 0.91516 0.80678 0.80818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.77 37.16 0.33 -2.18 16 2 C -0.08 -1.68 2.54 -90.63 -0.23 -1.91 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.37 8.41 -34.43 -0.29 -14.66 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.10 4.94 -3.82 -0.02 1.08 16 14 N -0.68 -9.82 5.12 -107.95 -0.55 -10.37 16 15 C 0.12 1.52 2.66 -68.87 -0.18 1.34 16 16 H 0.06 0.82 7.03 -51.93 -0.37 0.45 16 17 C -0.14 -1.59 9.36 37.16 0.35 -1.24 16 18 C -0.12 -1.33 4.69 -104.19 -0.49 -1.82 16 19 C 0.10 1.10 6.88 -39.29 -0.27 0.83 16 20 F -0.10 -1.20 15.56 2.25 0.04 -1.17 16 21 C 0.06 0.51 11.17 -17.46 -0.20 0.32 16 22 N -0.43 -4.10 10.36 -13.14 -0.14 -4.23 16 23 C 0.06 0.51 11.17 -17.47 -0.20 0.31 16 24 C 0.08 0.84 7.29 -39.28 -0.29 0.56 16 25 F -0.12 -1.26 16.40 2.25 0.04 -1.22 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 28 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.03 0.44 8.06 -51.93 -0.42 0.03 16 33 H 0.07 1.24 7.44 -51.93 -0.39 0.85 16 34 H 0.34 4.85 6.37 -39.29 -0.25 4.60 16 35 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 36 H 0.07 0.87 7.45 -51.93 -0.39 0.48 16 37 H 0.07 0.80 7.77 -51.93 -0.40 0.40 16 38 H 0.18 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -30.03 329.31 -7.03 -37.06 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.38 Total: -0.22 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.70 Total: -15.26 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.05 Total: -40.85 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.07 Total: -2.39 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.03 -7.03 -37.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602657573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.719 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds