Wall clock time and date at job start Tue Mar 31 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47616 * 59.99495 * 9 7 5 11 11 H 1.48500 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46767 * 299.99523 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.46974 * 324.99713 * 15 14 13 17 17 C 1.53005 * 109.46974 * 84.99381 * 15 14 13 18 18 C 1.50700 * 109.47202 * 204.99592 * 15 14 13 19 19 C 1.38816 * 120.80897 * 314.71936 * 18 15 14 20 20 F 1.35099 * 120.42876 * 0.02562 * 19 18 15 21 21 C 1.38457 * 119.13483 * 179.77676 * 19 18 15 22 22 N 1.31847 * 120.78488 * 0.51024 * 21 19 18 23 23 C 1.31838 * 121.77465 * 359.73889 * 22 21 19 24 24 C 1.38459 * 120.78549 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.43456 * 179.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 0.97004 * 120.00063 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 33 33 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 34 34 H 1.00894 * 110.99853 * 56.03851 * 14 13 2 35 35 H 1.09008 * 109.46792 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.47371 * 300.00296 * 17 15 14 37 37 H 1.09000 * 109.46603 * 60.00671 * 17 15 14 38 38 H 1.08007 * 119.60540 * 180.24915 * 21 19 18 39 39 H 1.08001 * 119.61296 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9925 -0.4023 -3.7283 8 7 2.6757 -1.5193 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 2.0919 1.9228 -5.1871 11 1 1.9928 -0.1380 -6.4622 12 1 0.0190 0.6703 -5.3090 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 1 2.0807 -1.7078 3.5333 17 6 3.5684 -0.2065 3.9498 18 6 1.2492 -0.2286 4.8274 19 6 0.8875 1.0974 5.0226 20 9 1.3158 2.0558 4.1722 21 6 0.0779 1.4240 6.0973 22 7 -0.3398 0.4950 6.9344 23 6 -0.0126 -0.7732 6.7836 24 6 0.7899 -1.1777 5.7303 25 9 1.1212 -2.4790 5.5829 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9230 -1.8422 -4.7317 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 0.6528 0.1793 2.4753 35 1 3.9195 -0.6992 4.8565 36 1 4.2017 -0.4946 3.1107 37 1 3.6123 0.8744 4.0838 38 1 -0.2114 2.4527 6.2541 39 1 -0.3747 -1.5054 7.4901 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602657573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:24 Heat of formation + Delta-G solvation = -87.458552 kcal Electronic energy + Delta-G solvation = -22306.402224 eV Core-core repulsion = 18690.710438 eV Total energy + Delta-G solvation = -3615.691786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.21704 -49.98511 -41.15517 -38.90063 -36.64618 -34.54375 -32.78420 -31.74550 -30.56080 -28.69904 -27.18841 -25.68502 -24.70326 -24.15082 -22.01093 -20.76857 -19.22184 -19.13606 -18.56239 -17.90878 -17.35142 -16.93713 -16.65550 -16.58809 -16.37993 -15.77577 -15.65781 -15.10950 -14.85302 -14.64460 -14.44322 -14.26874 -14.16268 -13.69320 -13.42477 -13.32578 -13.18052 -12.91149 -12.74443 -12.65514 -12.33473 -12.24310 -11.95416 -11.51806 -11.13524 -11.06297 -10.90231 -10.66669 -10.53233 -10.01064 -9.52665 -8.17677 -6.26838 -0.37745 -0.33131 1.40240 1.42903 1.50553 2.29442 2.41910 2.63009 2.84162 2.99773 3.15536 3.15925 3.32985 3.61012 3.92329 4.06853 4.10450 4.18860 4.30372 4.42481 4.47370 4.49934 4.64829 4.69838 4.72879 4.84659 4.88077 4.98256 5.20342 5.21709 5.34948 5.41666 5.45356 5.53776 5.76385 5.87778 5.93884 6.28207 6.30574 6.52071 6.88757 7.41413 8.94212 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.029427 B = 0.003386 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.282617 B = 8267.030372 C = 8583.897790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.058 0.942 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.078 3.922 14 N -0.673 5.673 15 C 0.122 3.878 16 H 0.059 0.941 17 C -0.132 4.132 18 C -0.128 4.128 19 C 0.092 3.908 20 F -0.112 7.112 21 C 0.069 3.931 22 N -0.440 5.440 23 C 0.072 3.928 24 C 0.077 3.923 25 F -0.124 7.124 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.062 0.938 29 H -0.012 1.012 30 H -0.010 1.010 31 H 0.262 0.738 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.342 0.658 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.201 0.799 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 3.101 23.638 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.051 4.051 14 N -0.306 5.306 15 C 0.012 3.988 16 H 0.077 0.923 17 C -0.190 4.190 18 C -0.138 4.138 19 C 0.069 3.931 20 F -0.090 7.090 21 C -0.089 4.089 22 N -0.147 5.147 23 C -0.087 4.087 24 C 0.054 3.946 25 F -0.103 7.103 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.218 0.782 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.690 3.643 24.144 24.863 hybrid contribution 0.214 -1.031 -2.116 2.364 sum -4.476 2.611 22.028 22.629 Atomic orbital electron populations 1.21643 0.95126 1.00584 1.00992 1.20997 0.96071 0.99113 0.93088 0.92324 1.18985 0.94278 0.94533 0.92555 1.21610 1.34589 1.08575 0.92063 0.92090 1.25943 0.95239 0.96080 1.02634 1.70091 1.40226 1.22945 1.24348 0.85566 0.78944 0.78783 0.78168 1.19287 1.21039 1.19191 1.21924 1.00075 0.94038 0.89050 1.60690 1.19774 1.49728 1.00384 1.20393 0.94812 0.97243 0.86328 0.92314 1.21757 0.93137 1.02267 1.01873 1.20730 1.01058 0.92971 0.99001 1.18548 0.98239 0.84984 0.91280 1.91626 1.87598 1.61164 1.68595 1.23447 0.94308 1.01890 0.89265 1.67878 1.19890 1.00827 1.26108 1.23400 0.94953 0.94248 0.96067 1.18589 0.99803 0.78702 0.97462 1.91546 1.90799 1.32659 1.95254 0.94122 0.93399 0.91943 0.99390 0.99204 0.92934 0.95733 0.91781 0.83881 0.91054 0.92093 0.91902 0.78187 0.77996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.77 71.98 0.63 -3.99 16 2 C -0.07 -3.02 2.54 -10.80 -0.03 -3.05 16 3 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.03 1.80 4.45 29.85 0.13 1.93 16 5 C -0.53 -30.11 8.41 25.60 0.22 -29.89 16 6 H 0.06 3.32 7.06 -2.92 -0.02 3.30 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 8 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 9 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 C 0.08 2.68 4.94 86.30 0.43 3.11 16 14 N -0.67 -19.12 5.12 -495.45 -2.54 -21.66 16 15 C 0.12 2.95 2.66 44.17 0.12 3.07 16 16 H 0.06 1.49 7.03 -2.39 -0.02 1.47 16 17 C -0.13 -3.01 9.36 71.98 0.67 -2.34 16 18 C -0.13 -2.65 4.69 -19.59 -0.09 -2.74 16 19 C 0.09 1.78 6.88 22.46 0.15 1.93 16 20 F -0.11 -2.56 15.56 44.97 0.70 -1.86 16 21 C 0.07 1.06 11.17 84.74 0.95 2.01 16 22 N -0.44 -7.12 10.36 -195.47 -2.02 -9.14 16 23 C 0.07 1.04 11.17 84.74 0.95 1.99 16 24 C 0.08 1.39 7.29 22.46 0.16 1.56 16 25 F -0.12 -2.45 16.40 44.97 0.74 -1.71 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.90 6.95 -2.39 -0.02 1.88 16 28 H 0.06 1.88 6.68 -2.38 -0.02 1.86 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.02 0.85 8.06 -2.38 -0.02 0.83 16 33 H 0.06 2.29 7.44 -2.39 -0.02 2.27 16 34 H 0.34 9.32 6.37 -89.70 -0.57 8.75 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.49 7.45 -2.39 -0.02 1.47 16 37 H 0.06 1.47 7.77 -2.39 -0.02 1.46 16 38 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -64.90 329.31 4.43 -60.47 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.49 Total: 10.45 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 4.75 Total: -26.06 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -4.28 Total: -87.96 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 1.44 Total: -3.57 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.90 4.43 -60.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602657573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.987 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds