Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99768 * 2 1 4 4 H 1.48507 * 109.46999 * 240.00081 * 3 2 1 5 5 H 1.48497 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47225 * 120.00129 * 3 2 1 7 7 C 1.37878 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47386 * 179.97438 * 9 7 2 11 11 C 1.46846 * 111.00052 * 293.95271 * 10 9 7 12 12 C 1.53036 * 109.52674 * 174.15637 * 11 10 9 13 13 C 1.53124 * 109.27545 * 59.17727 * 12 11 10 14 14 C 1.53118 * 109.16287 * 302.34825 * 13 12 11 15 15 H 1.09003 * 109.50067 * 297.67370 * 14 13 12 16 16 C 1.50701 * 109.50473 * 177.59334 * 14 13 12 17 17 C 1.34242 * 125.03172 * 94.99631 * 16 14 13 18 18 C 1.46486 * 106.99231 * 179.97438 * 17 16 14 19 19 C 1.39635 * 134.02433 * 180.02562 * 18 17 16 20 20 C 1.36628 * 119.75966 * 179.97438 * 19 18 17 21 21 C 1.38831 * 120.53083 * 0.03734 * 20 19 18 22 22 C 1.37755 * 120.66440 * 359.94200 * 21 20 19 23 23 C 1.39127 * 119.78052 * 0.03895 * 22 21 20 24 24 N 1.36827 * 125.03421 * 274.97954 * 16 14 13 25 25 H 0.96998 * 125.06640 * 0.03625 * 24 16 14 26 26 C 1.46840 * 111.00447 * 169.74082 * 10 9 7 27 27 H 0.97000 * 120.00436 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47431 * 59.99154 * 9 7 2 29 29 H 1.09003 * 109.47163 * 299.99420 * 9 7 2 30 30 H 1.09001 * 109.46359 * 54.13923 * 11 10 9 31 31 H 1.09004 * 109.46214 * 294.17707 * 11 10 9 32 32 H 1.09000 * 109.50526 * 299.24130 * 12 11 10 33 33 H 1.08997 * 109.53664 * 179.13545 * 12 11 10 34 34 H 1.08997 * 109.51938 * 182.43676 * 13 12 11 35 35 H 1.09008 * 109.52224 * 62.25123 * 13 12 11 36 36 H 1.07994 * 126.50109 * 359.95899 * 17 16 14 37 37 H 1.07997 * 120.12300 * 359.71971 * 19 18 17 38 38 H 1.08002 * 119.73294 * 179.97438 * 20 19 18 39 39 H 1.07991 * 119.66933 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.10946 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.46500 * 65.82054 * 26 10 9 42 42 H 1.09004 * 109.46182 * 305.85843 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 2.9708 -3.6540 -1.2523 12 6 4.0511 -4.7339 -1.1592 13 6 3.3889 -6.0904 -0.9019 14 6 2.5594 -6.0093 0.3826 15 1 3.2155 -5.7955 1.2264 16 6 1.8568 -7.3226 0.6116 17 6 2.3170 -8.3180 1.3859 18 6 1.3291 -9.3980 1.3269 19 6 1.2413 -10.6656 1.9060 20 6 0.1580 -11.4565 1.6458 21 6 -0.8562 -11.0105 0.8092 22 6 -0.7899 -9.7634 0.2278 23 6 0.3038 -8.9410 0.4792 24 7 0.6552 -7.6770 0.0614 25 1 0.1293 -7.1207 -0.5342 26 6 1.5225 -4.8923 0.2447 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 3.4399 -2.6847 -1.4212 31 1 2.2999 -3.8818 -2.0807 32 1 4.7304 -4.4994 -0.3397 33 1 4.6090 -4.7730 -2.0947 34 1 4.1572 -6.8557 -0.7918 35 1 2.7390 -6.3433 -1.7398 36 1 3.2404 -8.3219 1.9458 37 1 2.0287 -11.0211 2.5540 38 1 0.0907 -12.4370 2.0936 39 1 -1.7059 -11.6473 0.6128 40 1 -1.5842 -9.4253 -0.4212 41 1 0.8584 -5.1143 -0.5906 42 1 0.9396 -4.8224 1.1631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609144056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = 44.989547 kcal Electronic energy + Delta-G solvation = -21661.983494 eV Core-core repulsion = 18606.264619 eV Total energy + Delta-G solvation = -3055.718875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35523 -38.54174 -36.81043 -33.79515 -32.18725 -31.77899 -31.11202 -29.25594 -28.07518 -26.94257 -24.03654 -23.20251 -22.24907 -21.58748 -21.12778 -20.01018 -19.23235 -17.71982 -16.43588 -16.04268 -15.56266 -14.91145 -14.56785 -14.37838 -14.24939 -14.08625 -13.83932 -13.79390 -13.36266 -13.10753 -12.89671 -12.50095 -12.09684 -11.94946 -11.62401 -11.57920 -11.25197 -11.01294 -10.88919 -10.84934 -10.70101 -10.47254 -10.28492 -10.11332 -9.77252 -9.63134 -9.22865 -8.47596 -8.13792 -7.66645 -7.32712 -6.06881 -4.08633 1.11627 1.62567 2.74340 3.14151 3.30832 3.35153 3.37873 3.91147 4.35643 4.52004 4.74191 4.93388 4.98785 5.07901 5.09985 5.20159 5.28954 5.36640 5.37805 5.41989 5.52253 5.63501 5.72684 5.87162 5.88157 5.99653 6.04197 6.08619 6.11597 6.18519 6.26339 6.34483 6.43713 6.57446 6.65461 6.69285 6.77220 6.87254 7.19127 7.23073 7.27004 7.55992 7.74693 8.03197 8.13711 8.48350 8.98630 9.55846 11.04029 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.003275 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.605759 B = 8547.109858 C = 9057.684905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.533 5.533 11 C 0.062 3.938 12 C -0.117 4.117 13 C -0.107 4.107 14 C -0.028 4.028 15 H 0.104 0.896 16 C 0.109 3.891 17 C -0.211 4.211 18 C -0.104 4.104 19 C -0.074 4.074 20 C -0.151 4.151 21 C -0.107 4.107 22 C -0.129 4.129 23 C 0.094 3.906 24 N -0.589 5.589 25 H 0.414 0.586 26 C 0.062 3.938 27 H 0.262 0.738 28 H -0.010 1.010 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.018 0.982 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.145 0.855 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.016 0.984 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 -19.788 -0.176 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.258 5.258 11 C -0.066 4.066 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.047 4.047 15 H 0.122 0.878 16 C 0.000 4.000 17 C -0.235 4.235 18 C -0.109 4.109 19 C -0.093 4.093 20 C -0.170 4.170 21 C -0.126 4.126 22 C -0.149 4.149 23 C -0.013 4.013 24 N -0.191 5.191 25 H 0.252 0.748 26 C -0.067 4.067 27 H 0.072 0.928 28 H 0.008 0.992 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.163 0.837 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.034 0.966 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.546 -19.464 0.128 19.630 hybrid contribution -0.624 1.066 -0.952 1.560 sum 1.922 -18.398 -0.824 18.517 Atomic orbital electron populations 1.69943 1.06102 1.26965 1.50852 1.24993 0.94867 0.99359 0.95371 0.86548 0.79436 0.82674 0.78688 1.20258 1.21356 1.20094 1.21108 0.93491 0.89847 1.50288 0.91806 1.19707 0.90013 0.87306 0.96035 1.62001 1.27925 1.02138 1.33705 1.21982 0.94971 0.99277 0.90397 1.21645 0.98367 0.94039 1.01484 1.21596 0.98729 0.98067 0.96084 1.20081 0.96596 0.87959 1.00081 0.87804 1.20446 0.86392 0.96762 0.96392 1.21407 1.01570 0.93238 1.07332 1.19224 0.95622 0.95384 1.00638 1.20253 0.97969 0.92235 0.98844 1.20576 0.95128 1.00120 1.01213 1.20735 0.98950 0.95107 0.97818 1.20039 0.96798 0.94412 1.03684 1.18259 0.97131 0.86433 0.99504 1.41845 1.19657 1.14129 1.43512 0.74818 1.21997 0.94272 0.90481 0.99956 0.92825 0.99248 0.95203 0.89621 0.96424 0.91077 0.92053 0.91815 0.92750 0.83731 0.86290 0.86372 0.86083 0.86467 0.96642 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.06 8.43 -34.44 -0.29 -14.35 16 8 H 0.06 1.73 7.14 -52.49 -0.37 1.36 16 9 C 0.19 4.98 4.72 -4.98 -0.02 4.95 16 10 N -0.53 -11.08 4.65 -236.12 -1.10 -12.18 16 11 C 0.06 1.15 5.30 -3.83 -0.02 1.13 16 12 C -0.12 -1.70 6.09 -26.65 -0.16 -1.86 16 13 C -0.11 -1.41 5.27 -26.61 -0.14 -1.55 16 14 C -0.03 -0.39 2.71 -91.69 -0.25 -0.64 16 15 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 16 C 0.11 1.49 5.82 -81.77 -0.48 1.01 16 17 C -0.21 -2.81 10.95 -37.67 -0.41 -3.22 16 18 C -0.10 -1.41 6.37 -105.14 -0.67 -2.08 16 19 C -0.07 -0.86 10.05 -39.64 -0.40 -1.26 16 20 C -0.15 -1.56 9.97 -39.94 -0.40 -1.96 16 21 C -0.11 -1.10 10.01 -39.54 -0.40 -1.50 16 22 C -0.13 -1.49 10.08 -39.43 -0.40 -1.88 16 23 C 0.09 1.26 7.28 -83.99 -0.61 0.65 16 24 N -0.59 -7.72 5.84 -6.95 -0.04 -7.76 16 25 H 0.41 4.91 8.00 -40.82 -0.33 4.58 16 26 C 0.06 1.07 4.48 -3.84 -0.02 1.06 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 29 H 0.03 0.82 7.98 -51.93 -0.41 0.41 16 30 H 0.09 1.74 6.72 -51.93 -0.35 1.40 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.02 0.26 7.29 -51.93 -0.38 -0.12 16 42 H 0.07 1.29 8.01 -51.93 -0.42 0.87 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -30.23 338.32 -11.55 -41.78 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.47 Total: 2.49 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -4.76 Total: -20.04 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.40 Total: -45.72 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.23 -11.55 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609144056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.771 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds