Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99768 * 2 1 4 4 H 1.48507 * 109.46999 * 240.00081 * 3 2 1 5 5 H 1.48497 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47225 * 120.00129 * 3 2 1 7 7 C 1.37878 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47386 * 179.97438 * 9 7 2 11 11 C 1.46846 * 111.00052 * 293.95271 * 10 9 7 12 12 C 1.53036 * 109.52674 * 174.15637 * 11 10 9 13 13 C 1.53124 * 109.27545 * 59.17727 * 12 11 10 14 14 C 1.53118 * 109.16287 * 302.34825 * 13 12 11 15 15 H 1.09003 * 109.50067 * 297.67370 * 14 13 12 16 16 C 1.50701 * 109.50473 * 177.59334 * 14 13 12 17 17 C 1.34242 * 125.03172 * 94.99631 * 16 14 13 18 18 C 1.46486 * 106.99231 * 179.97438 * 17 16 14 19 19 C 1.39635 * 134.02433 * 180.02562 * 18 17 16 20 20 C 1.36628 * 119.75966 * 179.97438 * 19 18 17 21 21 C 1.38831 * 120.53083 * 0.03734 * 20 19 18 22 22 C 1.37755 * 120.66440 * 359.94200 * 21 20 19 23 23 C 1.39127 * 119.78052 * 0.03895 * 22 21 20 24 24 N 1.36827 * 125.03421 * 274.97954 * 16 14 13 25 25 H 0.96998 * 125.06640 * 0.03625 * 24 16 14 26 26 C 1.46840 * 111.00447 * 169.74082 * 10 9 7 27 27 H 0.97000 * 120.00436 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47431 * 59.99154 * 9 7 2 29 29 H 1.09003 * 109.47163 * 299.99420 * 9 7 2 30 30 H 1.09001 * 109.46359 * 54.13923 * 11 10 9 31 31 H 1.09004 * 109.46214 * 294.17707 * 11 10 9 32 32 H 1.09000 * 109.50526 * 299.24130 * 12 11 10 33 33 H 1.08997 * 109.53664 * 179.13545 * 12 11 10 34 34 H 1.08997 * 109.51938 * 182.43676 * 13 12 11 35 35 H 1.09008 * 109.52224 * 62.25123 * 13 12 11 36 36 H 1.07994 * 126.50109 * 359.95899 * 17 16 14 37 37 H 1.07997 * 120.12300 * 359.71971 * 19 18 17 38 38 H 1.08002 * 119.73294 * 179.97438 * 20 19 18 39 39 H 1.07991 * 119.66933 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.10946 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.46500 * 65.82054 * 26 10 9 42 42 H 1.09004 * 109.46182 * 305.85843 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 2.9708 -3.6540 -1.2523 12 6 4.0511 -4.7339 -1.1592 13 6 3.3889 -6.0904 -0.9019 14 6 2.5594 -6.0093 0.3826 15 1 3.2155 -5.7955 1.2264 16 6 1.8568 -7.3226 0.6116 17 6 2.3170 -8.3180 1.3859 18 6 1.3291 -9.3980 1.3269 19 6 1.2413 -10.6656 1.9060 20 6 0.1580 -11.4565 1.6458 21 6 -0.8562 -11.0105 0.8092 22 6 -0.7899 -9.7634 0.2278 23 6 0.3038 -8.9410 0.4792 24 7 0.6552 -7.6770 0.0614 25 1 0.1293 -7.1207 -0.5342 26 6 1.5225 -4.8923 0.2447 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 3.4399 -2.6847 -1.4212 31 1 2.2999 -3.8818 -2.0807 32 1 4.7304 -4.4994 -0.3397 33 1 4.6090 -4.7730 -2.0947 34 1 4.1572 -6.8557 -0.7918 35 1 2.7390 -6.3433 -1.7398 36 1 3.2404 -8.3219 1.9458 37 1 2.0287 -11.0211 2.5540 38 1 0.0907 -12.4370 2.0936 39 1 -1.7059 -11.6473 0.6128 40 1 -1.5842 -9.4253 -0.4212 41 1 0.8584 -5.1143 -0.5906 42 1 0.9396 -4.8224 1.1631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609144056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = 28.081875 kcal Electronic energy + Delta-G solvation = -21662.716666 eV Core-core repulsion = 18606.264619 eV Total energy + Delta-G solvation = -3056.452047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.31734 -39.89154 -37.80714 -35.52882 -33.90520 -32.84091 -32.33161 -30.15988 -29.40564 -28.60580 -25.66574 -24.49988 -23.41454 -22.87305 -22.25099 -21.14829 -20.50144 -18.68924 -18.46594 -17.24998 -16.77727 -16.26656 -15.99949 -15.76110 -15.54854 -15.25534 -14.99028 -14.82661 -14.62575 -14.46895 -13.99339 -13.93617 -13.72422 -13.33477 -13.00275 -12.72213 -12.60525 -12.54759 -12.40407 -12.25825 -12.09001 -11.76468 -11.71356 -11.64051 -11.33186 -11.06052 -10.63542 -10.60199 -9.08929 -9.05418 -8.59767 -8.23121 -6.33665 0.22817 0.74987 1.40193 1.43591 1.51409 1.75397 2.18555 2.38496 3.03483 3.08391 3.14155 3.69258 3.80839 3.86632 3.96408 4.14012 4.21626 4.28185 4.32067 4.35231 4.49775 4.58982 4.61162 4.66006 4.73691 4.83189 4.87915 4.96135 5.05156 5.09535 5.12505 5.15007 5.20672 5.21504 5.30315 5.45539 5.59570 5.62638 5.73522 5.88008 5.91830 6.01559 6.29190 6.30386 6.57757 6.61075 6.82401 7.36386 8.88037 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.003275 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.605759 B = 8547.109858 C = 9057.684905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.539 5.539 11 C 0.061 3.939 12 C -0.107 4.107 13 C -0.100 4.100 14 C -0.013 4.013 15 H 0.105 0.895 16 C 0.095 3.905 17 C -0.213 4.213 18 C -0.131 4.131 19 C -0.084 4.084 20 C -0.151 4.151 21 C -0.104 4.104 22 C -0.144 4.144 23 C 0.074 3.926 24 N -0.592 5.592 25 H 0.416 0.584 26 C 0.065 3.935 27 H 0.265 0.735 28 H -0.040 1.040 29 H 0.000 1.000 30 H 0.064 0.936 31 H 0.011 0.989 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.016 0.984 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 -21.473 -0.141 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.263 5.263 11 C -0.067 4.067 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.033 4.033 15 H 0.123 0.877 16 C -0.014 4.014 17 C -0.238 4.238 18 C -0.135 4.135 19 C -0.103 4.103 20 C -0.170 4.170 21 C -0.123 4.123 22 C -0.165 4.165 23 C -0.033 4.033 24 N -0.196 5.196 25 H 0.253 0.747 26 C -0.064 4.064 27 H 0.073 0.927 28 H -0.023 1.023 29 H 0.018 0.982 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.178 0.822 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.148 0.852 41 H 0.034 0.966 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.917 -21.176 0.158 21.536 hybrid contribution -1.134 1.465 -0.944 2.079 sum 2.783 -19.711 -0.786 19.922 Atomic orbital electron populations 1.70081 1.07843 1.28033 1.51729 1.25945 0.95737 1.03330 0.94717 0.85416 0.78142 0.77722 0.79242 1.19030 1.20942 1.19221 1.21434 0.93738 0.90891 1.50159 0.91572 1.19346 0.90104 0.89134 0.93148 1.61923 1.26963 1.02305 1.35121 1.22034 0.95626 1.00016 0.89044 1.21585 0.96915 0.92923 1.03016 1.21573 0.99067 0.97877 0.95290 1.19901 0.95604 0.86888 1.00874 0.87691 1.20316 0.86972 0.96573 0.97522 1.21671 1.02105 0.93114 1.06865 1.19535 0.95934 0.96425 1.01633 1.20573 0.99035 0.91697 0.98964 1.20978 0.94396 1.01079 1.00589 1.21161 0.99677 0.94761 0.96695 1.20353 0.96831 0.94933 1.04394 1.18614 0.98000 0.86631 1.00068 1.41860 1.19647 1.14367 1.43688 0.74696 1.22004 0.95246 0.90037 0.99111 0.92667 1.02269 0.98175 0.91766 0.97102 0.90799 0.89483 0.89272 0.92783 0.82240 0.84510 0.83545 0.83298 0.85214 0.96565 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.80 13.29 21.45 0.28 -56.52 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.52 -29.76 8.43 25.60 0.22 -29.55 16 8 H 0.07 3.65 7.14 -2.91 -0.02 3.63 16 9 C 0.21 11.27 4.72 85.56 0.40 11.68 16 10 N -0.54 -23.13 4.65 -900.96 -4.19 -27.31 16 11 C 0.06 2.29 5.30 86.33 0.46 2.74 16 12 C -0.11 -2.90 6.09 30.65 0.19 -2.71 16 13 C -0.10 -2.46 5.27 30.67 0.16 -2.30 16 14 C -0.01 -0.37 2.71 -11.49 -0.03 -0.40 16 15 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 16 C 0.10 2.54 5.82 40.87 0.24 2.78 16 17 C -0.21 -5.46 10.95 23.51 0.26 -5.20 16 18 C -0.13 -3.40 6.37 -20.20 -0.13 -3.53 16 19 C -0.08 -1.78 10.05 22.23 0.22 -1.56 16 20 C -0.15 -2.72 9.97 22.03 0.22 -2.50 16 21 C -0.10 -1.89 10.01 22.30 0.22 -1.67 16 22 C -0.14 -3.17 10.08 22.37 0.23 -2.94 16 23 C 0.07 1.94 7.28 39.03 0.28 2.22 16 24 N -0.59 -15.58 5.84 -175.91 -1.03 -16.61 16 25 H 0.42 10.14 8.00 -92.71 -0.74 9.39 16 26 C 0.06 2.31 4.48 86.33 0.39 2.70 16 27 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 28 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 29 H 0.00 0.01 7.98 -2.39 -0.02 -0.01 16 30 H 0.06 2.66 6.72 -2.39 -0.02 2.65 16 31 H 0.01 0.41 8.14 -2.38 -0.02 0.40 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.15 1.81 8.06 -2.92 -0.02 1.78 16 40 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.02 0.57 7.29 -2.39 -0.02 0.56 16 42 H 0.05 2.11 8.01 -2.39 -0.02 2.10 16 Total: -1.00 -66.83 338.32 1.15 -65.68 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.26 Total: 18.27 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.79 Total: -29.72 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.93 Total: -100.44 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.83 1.15 -65.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609144056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.764 kcal (2) G-P(sol) polarization free energy of solvation -66.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds