Wall clock time and date at job start Tue Mar 31 2020 06:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00393 * 2 1 4 4 H 1.48497 * 109.47217 * 270.00065 * 3 2 1 5 5 H 1.48501 * 109.46471 * 30.00447 * 3 2 1 6 6 H 1.48504 * 109.46763 * 150.00159 * 3 2 1 7 7 C 1.37885 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.57574 * 60.30132 * 9 7 2 11 11 C 1.53034 * 109.27992 * 177.60215 * 10 9 7 12 12 N 1.46847 * 109.51345 * 300.80438 * 11 10 9 13 13 C 1.46895 * 110.99982 * 185.84805 * 12 11 10 14 14 C 1.50700 * 109.47354 * 169.99549 * 13 12 11 15 15 C 1.34236 * 125.03900 * 264.69546 * 14 13 12 16 16 C 1.46487 * 106.99697 * 179.85704 * 15 14 13 17 17 C 1.39634 * 134.03080 * 180.10960 * 16 15 14 18 18 C 1.36614 * 119.76589 * 180.35891 * 17 16 15 19 19 C 1.38833 * 120.52876 * 359.96005 * 18 17 16 20 20 C 1.37740 * 120.66553 * 0.02562 * 19 18 17 21 21 C 1.39132 * 119.78091 * 0.02562 * 20 19 18 22 22 N 1.36835 * 125.03372 * 84.99905 * 14 13 12 23 23 H 0.97003 * 125.05794 * 0.02562 * 22 14 13 24 24 C 1.46843 * 111.20124 * 61.74903 * 12 11 10 25 25 C 1.53042 * 109.52278 * 298.25596 * 24 12 11 26 26 H 0.96998 * 119.99701 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.52421 * 300.13228 * 9 7 2 28 28 H 1.08997 * 109.51083 * 57.64808 * 10 9 7 29 29 H 1.08998 * 109.48980 * 297.53740 * 10 9 7 30 30 H 1.09002 * 109.46271 * 180.79158 * 11 10 9 31 31 H 1.08994 * 109.46242 * 60.81457 * 11 10 9 32 32 H 1.09000 * 109.47118 * 289.99436 * 13 12 11 33 33 H 1.09003 * 109.47534 * 49.99526 * 13 12 11 34 34 H 1.08003 * 126.49967 * 359.97438 * 15 14 13 35 35 H 1.08006 * 120.11227 * 0.33861 * 17 16 15 36 36 H 1.08002 * 119.74035 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.66713 * 180.02562 * 19 18 17 38 38 H 1.08004 * 120.11387 * 180.02562 * 20 19 18 39 39 H 1.08993 * 109.46313 * 58.27251 * 24 12 11 40 40 H 1.09000 * 109.46480 * 178.25361 * 24 12 11 41 41 H 1.08997 * 109.50758 * 179.11703 * 25 24 12 42 42 H 1.08998 * 109.50897 * 299.20258 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 0.3749 -2.5858 -1.2534 11 6 -0.3411 -3.9381 -1.2769 12 7 0.6526 -5.0193 -1.2772 13 6 0.0062 -6.3284 -1.4391 14 6 1.0570 -7.3811 -1.6807 15 6 1.4455 -7.8194 -2.8886 16 6 2.4807 -8.8313 -2.6644 17 6 3.2548 -9.6311 -3.5075 18 6 4.1557 -10.5076 -2.9722 19 6 4.3085 -10.6092 -1.5960 20 6 3.5554 -9.8296 -0.7461 21 6 2.6311 -8.9309 -1.2694 22 7 1.7524 -8.0362 -0.7011 23 1 1.6420 -7.8923 0.2518 24 6 1.4748 -4.9852 -0.0610 25 6 2.2449 -3.6640 -0.0011 26 1 -0.4849 0.8401 0.0004 27 1 0.6225 -2.5570 0.8882 28 1 0.9992 -2.4890 -2.1416 29 1 -0.3629 -1.7836 -1.2375 30 1 -0.9548 -4.0086 -2.1750 31 1 -0.9757 -4.0284 -0.3954 32 1 -0.5515 -6.5725 -0.5350 33 1 -0.6760 -6.2942 -2.2887 34 1 1.0679 -7.4874 -3.8445 35 1 3.1416 -9.5572 -4.5791 36 1 4.7539 -11.1263 -3.6246 37 1 5.0251 -11.3065 -1.1878 38 1 3.6818 -9.9157 0.3231 39 1 0.8316 -5.0707 0.8147 40 1 2.1802 -5.8161 -0.0761 41 1 2.8430 -3.6323 0.9095 42 1 2.8991 -3.5843 -0.8692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619073724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:40 Heat of formation + Delta-G solvation = 51.443607 kcal Electronic energy + Delta-G solvation = -21799.797921 eV Core-core repulsion = 18744.358914 eV Total energy + Delta-G solvation = -3055.439006 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28165 -38.36211 -36.85519 -34.01080 -32.05579 -31.49154 -30.04783 -29.25357 -29.09818 -26.48184 -24.50993 -22.57659 -21.94983 -21.59009 -21.20393 -20.06894 -18.64348 -17.63761 -16.44856 -16.20677 -15.51594 -15.27028 -14.59544 -14.39741 -14.13990 -14.06144 -13.85585 -13.40811 -12.98490 -12.89980 -12.65030 -12.42242 -12.08555 -11.83597 -11.55135 -11.52414 -11.35845 -10.95220 -10.88177 -10.77204 -10.47737 -10.26151 -10.01560 -9.68885 -9.47110 -9.00027 -8.74599 -8.31345 -8.16337 -7.85878 -7.63808 -5.98691 -4.03762 1.12839 1.64437 2.72789 3.12724 3.31153 3.37731 3.41198 3.93462 4.43408 4.46251 4.66594 4.79057 5.00271 5.12723 5.22869 5.31806 5.39348 5.44721 5.51573 5.61652 5.68834 5.76691 5.90612 6.00211 6.03966 6.07566 6.13572 6.24381 6.44943 6.53333 6.56913 6.59528 6.78726 6.81250 6.87800 7.03236 7.11204 7.19887 7.37177 7.51860 7.56323 7.60750 7.79749 8.02329 8.13062 8.46925 8.99680 9.60749 11.07606 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030306 B = 0.003346 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.679481 B = 8364.951416 C = 8721.305639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.104 4.104 11 C 0.058 3.942 12 N -0.528 5.528 13 C 0.110 3.890 14 C 0.103 3.897 15 C -0.190 4.190 16 C -0.105 4.105 17 C -0.072 4.072 18 C -0.152 4.152 19 C -0.105 4.105 20 C -0.130 4.130 21 C 0.097 3.903 22 N -0.592 5.592 23 H 0.412 0.588 24 C 0.056 3.944 25 C -0.105 4.105 26 H 0.259 0.741 27 H 0.020 0.980 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.024 0.976 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.022 0.978 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -19.140 -3.312 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.069 4.069 12 N -0.253 5.253 13 C -0.019 4.019 14 C -0.005 4.005 15 C -0.215 4.215 16 C -0.110 4.110 17 C -0.090 4.090 18 C -0.171 4.171 19 C -0.125 4.125 20 C -0.151 4.151 21 C -0.010 4.010 22 N -0.195 5.195 23 H 0.249 0.751 24 C -0.071 4.071 25 C -0.143 4.143 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.163 0.837 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.099 -18.867 -3.582 19.319 hybrid contribution -0.081 0.871 1.201 1.486 sum 2.018 -17.996 -2.381 18.265 Atomic orbital electron populations 1.69868 1.05864 1.26329 1.51125 1.24966 0.94853 0.99024 0.95164 0.86625 0.79873 0.83580 0.78107 1.20676 1.21328 1.20000 1.21205 0.92901 0.90644 1.50107 0.92765 1.18680 0.92651 0.91730 0.93936 1.21675 1.00263 0.92809 0.99512 1.22311 0.92887 0.92815 0.98896 1.62049 1.23669 1.01006 1.38606 1.20752 0.92212 0.87352 1.01562 1.20239 0.96734 0.95680 0.87840 1.21414 1.01642 1.01598 0.96861 1.19240 0.99811 0.99898 0.92079 1.20266 0.95015 0.94808 0.98951 1.20573 1.00617 1.00911 0.95033 1.20734 0.99229 0.99182 0.93320 1.20014 0.97707 0.97928 0.99457 1.18237 0.95069 0.94918 0.92822 1.41898 1.34460 1.34632 1.08520 0.75119 1.22211 0.95828 0.99696 0.89397 1.21664 0.98734 0.93548 1.00343 0.93090 0.96201 0.93647 0.88772 0.92248 0.95780 0.94429 0.88437 0.83661 0.86236 0.86359 0.86099 0.86538 0.95946 0.92622 0.93280 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 11.37 55.43 0.63 -24.60 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 8 H 0.05 1.49 7.75 -52.48 -0.41 1.08 16 9 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 10 C -0.10 -2.42 5.12 -26.65 -0.14 -2.56 16 11 C 0.06 1.08 5.46 -3.84 -0.02 1.06 16 12 N -0.53 -9.10 4.65 -236.12 -1.10 -10.20 16 13 C 0.11 1.51 5.48 -4.98 -0.03 1.48 16 14 C 0.10 1.42 5.82 -81.77 -0.48 0.94 16 15 C -0.19 -2.64 10.95 -37.67 -0.41 -3.05 16 16 C -0.11 -1.46 6.37 -105.14 -0.67 -2.13 16 17 C -0.07 -0.86 10.05 -39.65 -0.40 -1.26 16 18 C -0.15 -1.61 9.97 -39.95 -0.40 -2.01 16 19 C -0.11 -1.10 10.01 -39.54 -0.40 -1.49 16 20 C -0.13 -1.49 10.08 -39.43 -0.40 -1.89 16 21 C 0.10 1.29 7.28 -83.99 -0.61 0.68 16 22 N -0.59 -7.54 5.05 -6.95 -0.04 -7.58 16 23 H 0.41 4.46 8.58 -40.82 -0.35 4.10 16 24 C 0.06 1.00 5.30 -3.83 -0.02 0.98 16 25 C -0.11 -2.22 5.32 -26.64 -0.14 -2.36 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 30 H 0.06 1.00 8.02 -51.93 -0.42 0.59 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.10 1.20 7.98 -51.93 -0.41 0.79 16 34 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.91 5.93 -51.93 -0.31 0.60 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -29.52 335.19 -11.59 -41.11 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.42 Total: 3.26 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -4.69 Total: -23.34 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.50 Total: -42.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.52 -11.59 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619073724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.556 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds