Wall clock time and date at job start Tue Mar 31 2020 06:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00393 * 2 1 4 4 H 1.48497 * 109.47217 * 270.00065 * 3 2 1 5 5 H 1.48501 * 109.46471 * 30.00447 * 3 2 1 6 6 H 1.48504 * 109.46763 * 150.00159 * 3 2 1 7 7 C 1.37885 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.57574 * 60.30132 * 9 7 2 11 11 C 1.53034 * 109.27992 * 177.60215 * 10 9 7 12 12 N 1.46847 * 109.51345 * 300.80438 * 11 10 9 13 13 C 1.46895 * 110.99982 * 185.84805 * 12 11 10 14 14 C 1.50700 * 109.47354 * 169.99549 * 13 12 11 15 15 C 1.34236 * 125.03900 * 264.69546 * 14 13 12 16 16 C 1.46487 * 106.99697 * 179.85704 * 15 14 13 17 17 C 1.39634 * 134.03080 * 180.10960 * 16 15 14 18 18 C 1.36614 * 119.76589 * 180.35891 * 17 16 15 19 19 C 1.38833 * 120.52876 * 359.96005 * 18 17 16 20 20 C 1.37740 * 120.66553 * 0.02562 * 19 18 17 21 21 C 1.39132 * 119.78091 * 0.02562 * 20 19 18 22 22 N 1.36835 * 125.03372 * 84.99905 * 14 13 12 23 23 H 0.97003 * 125.05794 * 0.02562 * 22 14 13 24 24 C 1.46843 * 111.20124 * 61.74903 * 12 11 10 25 25 C 1.53042 * 109.52278 * 298.25596 * 24 12 11 26 26 H 0.96998 * 119.99701 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.52421 * 300.13228 * 9 7 2 28 28 H 1.08997 * 109.51083 * 57.64808 * 10 9 7 29 29 H 1.08998 * 109.48980 * 297.53740 * 10 9 7 30 30 H 1.09002 * 109.46271 * 180.79158 * 11 10 9 31 31 H 1.08994 * 109.46242 * 60.81457 * 11 10 9 32 32 H 1.09000 * 109.47118 * 289.99436 * 13 12 11 33 33 H 1.09003 * 109.47534 * 49.99526 * 13 12 11 34 34 H 1.08003 * 126.49967 * 359.97438 * 15 14 13 35 35 H 1.08006 * 120.11227 * 0.33861 * 17 16 15 36 36 H 1.08002 * 119.74035 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.66713 * 180.02562 * 19 18 17 38 38 H 1.08004 * 120.11387 * 180.02562 * 20 19 18 39 39 H 1.08993 * 109.46313 * 58.27251 * 24 12 11 40 40 H 1.09000 * 109.46480 * 178.25361 * 24 12 11 41 41 H 1.08997 * 109.50758 * 179.11703 * 25 24 12 42 42 H 1.08998 * 109.50897 * 299.20258 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 0.3749 -2.5858 -1.2534 11 6 -0.3411 -3.9381 -1.2769 12 7 0.6526 -5.0193 -1.2772 13 6 0.0062 -6.3284 -1.4391 14 6 1.0570 -7.3811 -1.6807 15 6 1.4455 -7.8194 -2.8886 16 6 2.4807 -8.8313 -2.6644 17 6 3.2548 -9.6311 -3.5075 18 6 4.1557 -10.5076 -2.9722 19 6 4.3085 -10.6092 -1.5960 20 6 3.5554 -9.8296 -0.7461 21 6 2.6311 -8.9309 -1.2694 22 7 1.7524 -8.0362 -0.7011 23 1 1.6420 -7.8923 0.2518 24 6 1.4748 -4.9852 -0.0610 25 6 2.2449 -3.6640 -0.0011 26 1 -0.4849 0.8401 0.0004 27 1 0.6225 -2.5570 0.8882 28 1 0.9992 -2.4890 -2.1416 29 1 -0.3629 -1.7836 -1.2375 30 1 -0.9548 -4.0086 -2.1750 31 1 -0.9757 -4.0284 -0.3954 32 1 -0.5515 -6.5725 -0.5350 33 1 -0.6760 -6.2942 -2.2887 34 1 1.0679 -7.4874 -3.8445 35 1 3.1416 -9.5572 -4.5791 36 1 4.7539 -11.1263 -3.6246 37 1 5.0251 -11.3065 -1.1878 38 1 3.6818 -9.9157 0.3231 39 1 0.8316 -5.0707 0.8147 40 1 2.1802 -5.8161 -0.0761 41 1 2.8430 -3.6323 0.9095 42 1 2.8991 -3.5843 -0.8692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619073724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:40 Heat of formation + Delta-G solvation = 35.567240 kcal Electronic energy + Delta-G solvation = -21800.486371 eV Core-core repulsion = 18744.358914 eV Total energy + Delta-G solvation = -3056.127457 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22139 -39.81341 -37.83732 -35.74872 -33.51345 -32.75817 -31.59242 -30.44134 -30.11007 -27.99162 -26.05589 -23.98826 -23.38902 -22.81619 -22.22427 -21.08722 -20.38983 -18.56845 -18.44665 -17.14161 -16.99839 -16.43834 -16.23813 -15.72828 -15.21915 -15.12583 -14.89593 -14.73622 -14.52561 -14.36350 -14.16247 -13.76890 -13.32558 -13.12679 -13.00582 -12.85888 -12.70854 -12.41702 -12.40913 -12.16866 -12.03165 -11.89517 -11.70432 -11.38832 -10.86514 -10.69008 -10.59922 -10.38497 -9.28468 -9.01731 -8.58073 -8.09275 -6.22242 0.23781 0.76910 1.40126 1.41188 1.50891 1.72137 2.20753 2.43022 3.05092 3.13365 3.18045 3.66215 3.90870 4.11479 4.14736 4.22976 4.29200 4.33417 4.39310 4.51252 4.52328 4.61826 4.62485 4.71853 4.72309 4.87260 4.90250 5.05238 5.07673 5.13617 5.18941 5.22924 5.30171 5.53754 5.60873 5.61588 5.75177 5.88849 5.90965 5.98068 6.01004 6.21733 6.26529 6.31195 6.40150 6.66283 6.88371 7.45333 8.95170 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030306 B = 0.003346 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.679481 B = 8364.951416 C = 8721.305639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.046 3.954 10 C -0.096 4.096 11 C 0.069 3.931 12 N -0.538 5.538 13 C 0.115 3.885 14 C 0.092 3.908 15 C -0.202 4.202 16 C -0.135 4.135 17 C -0.087 4.087 18 C -0.153 4.153 19 C -0.104 4.104 20 C -0.142 4.142 21 C 0.079 3.921 22 N -0.590 5.590 23 H 0.419 0.581 24 C 0.067 3.933 25 C -0.099 4.099 26 H 0.261 0.739 27 H -0.009 1.009 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.023 0.977 32 H 0.052 0.948 33 H 0.114 0.886 34 H 0.152 0.848 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -20.836 -3.542 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.028 3.972 10 C -0.134 4.134 11 C -0.058 4.058 12 N -0.263 5.263 13 C -0.013 4.013 14 C -0.016 4.016 15 C -0.228 4.228 16 C -0.140 4.140 17 C -0.105 4.105 18 C -0.172 4.172 19 C -0.123 4.123 20 C -0.162 4.162 21 C -0.028 4.028 22 N -0.194 5.194 23 H 0.257 0.743 24 C -0.061 4.061 25 C -0.137 4.137 26 H 0.070 0.930 27 H 0.009 0.991 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.153 0.847 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.906 -20.581 -3.805 21.131 hybrid contribution -0.268 1.321 1.253 1.840 sum 2.638 -19.261 -2.552 19.607 Atomic orbital electron populations 1.69993 1.06999 1.27088 1.51409 1.25705 0.95717 1.02200 0.94816 0.85658 0.78742 0.79640 0.78230 1.20166 1.20753 1.19553 1.21571 0.92877 0.92405 1.50519 0.93480 1.18642 0.93055 0.92251 0.93298 1.21428 0.99212 0.94897 0.97902 1.22071 0.92716 0.91014 0.99982 1.61942 1.23708 1.02391 1.38238 1.20774 0.92355 0.85209 1.02924 1.20193 0.97221 0.96077 0.88143 1.21660 1.01891 1.01880 0.97360 1.19552 1.00670 1.00800 0.92933 1.20560 0.95250 0.94998 0.99696 1.20959 1.00081 1.00424 0.95722 1.21168 0.98984 0.98877 0.93292 1.20355 0.97426 0.97679 1.00773 1.18564 0.95704 0.95569 0.92967 1.41873 1.34283 1.34497 1.08778 0.74299 1.22056 0.96043 0.98004 0.90023 1.21521 0.98065 0.94305 0.99768 0.93011 0.99056 0.95266 0.91702 0.89951 0.95923 0.93040 0.86784 0.82992 0.84956 0.83749 0.83226 0.84730 0.95455 0.90809 0.93171 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.82 11.37 21.45 0.24 -52.58 16 2 C 0.01 0.80 5.31 84.66 0.45 1.25 16 3 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 8 H 0.05 2.64 7.75 -2.91 -0.02 2.62 16 9 C 0.05 2.34 2.16 -11.46 -0.02 2.31 16 10 C -0.10 -4.56 5.12 30.65 0.16 -4.40 16 11 C 0.07 2.56 5.46 86.32 0.47 3.03 16 12 N -0.54 -17.88 4.65 -900.96 -4.19 -22.06 16 13 C 0.12 2.94 5.48 85.56 0.47 3.41 16 14 C 0.09 2.39 5.82 40.86 0.24 2.63 16 15 C -0.20 -5.43 10.95 23.51 0.26 -5.17 16 16 C -0.13 -3.60 6.37 -20.20 -0.13 -3.72 16 17 C -0.09 -1.93 10.05 22.23 0.22 -1.71 16 18 C -0.15 -2.84 9.97 22.03 0.22 -2.62 16 19 C -0.10 -1.87 10.01 22.29 0.22 -1.65 16 20 C -0.14 -2.95 10.08 22.37 0.23 -2.72 16 21 C 0.08 2.01 7.28 39.03 0.28 2.29 16 22 N -0.59 -14.20 5.05 -175.91 -0.89 -15.09 16 23 H 0.42 8.40 8.58 -92.71 -0.80 7.60 16 24 C 0.07 2.30 5.30 86.33 0.46 2.76 16 25 C -0.10 -4.22 5.32 30.65 0.16 -4.05 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 28 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 3.45 6.17 -2.39 -0.01 3.43 16 30 H 0.08 2.66 8.02 -2.39 -0.02 2.64 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.20 8.12 -2.39 -0.02 1.18 16 33 H 0.11 2.54 7.98 -2.39 -0.02 2.52 16 34 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 38 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 2.29 5.93 -2.39 -0.01 2.28 16 41 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.04 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -64.39 335.19 1.31 -63.08 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.21 Total: 18.82 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 3.90 Total: -38.33 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -4.83 Total: -89.73 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -64.39 1.31 -63.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619073724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.645 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds