Wall clock time and date at job start Tue Mar 31 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47048 * 2 1 4 4 C 1.34777 * 119.99880 * 299.99731 * 3 2 1 5 5 O 1.21283 * 120.00223 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99993 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47018 * 319.99583 * 6 4 3 8 8 N 1.46906 * 109.47187 * 200.00134 * 6 4 3 9 9 C 1.52994 * 109.47012 * 80.00326 * 6 4 3 10 10 C 1.53004 * 109.47238 * 184.99957 * 9 6 4 11 11 C 1.50701 * 109.47146 * 179.97438 * 10 9 6 12 12 H 1.08000 * 120.00163 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99659 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00483 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99858 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46818 * 89.99929 * 15 13 11 17 17 H 1.48495 * 109.47059 * 209.99991 * 15 13 11 18 18 H 1.48498 * 109.46948 * 330.00494 * 15 13 11 19 19 C 1.50696 * 109.47191 * 239.99703 * 2 1 3 20 20 O 1.20826 * 120.00424 * 334.99868 * 19 2 1 21 21 O 1.34234 * 119.99775 * 154.99892 * 19 2 1 22 22 C 1.53001 * 109.46772 * 119.99729 * 2 1 3 23 23 C 1.53000 * 117.49684 * 123.62765 * 22 2 1 24 24 C 1.52995 * 117.50056 * 55.00477 * 22 2 1 25 25 H 1.09002 * 109.46845 * 60.00583 * 1 2 3 26 26 H 1.09005 * 109.46445 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47369 * 300.00158 * 1 2 3 28 28 H 0.96996 * 120.00036 * 119.99232 * 3 2 1 29 29 H 1.00896 * 111.00309 * 176.04524 * 8 6 4 30 30 H 1.00902 * 110.99923 * 300.00687 * 8 6 4 31 31 H 1.09003 * 109.46995 * 304.99548 * 9 6 4 32 32 H 1.09003 * 109.47429 * 64.99905 * 9 6 4 33 33 H 1.08993 * 109.46824 * 299.99739 * 10 9 6 34 34 H 1.09003 * 109.46953 * 59.99657 * 10 9 6 35 35 H 0.96994 * 120.00358 * 179.97438 * 14 13 11 36 36 H 0.96695 * 116.99855 * 180.02562 * 21 19 2 37 37 H 1.09005 * 115.54840 * 269.33266 * 22 2 1 38 38 H 1.08997 * 117.50364 * 359.97438 * 23 22 2 39 39 H 1.09007 * 117.49897 * 145.02122 * 23 22 2 40 40 H 1.09001 * 117.50077 * 214.97686 * 24 22 2 41 41 H 1.08999 * 117.50064 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.6928 2.2110 -1.0109 5 8 0.9952 1.8145 -1.9203 6 6 2.1946 3.6320 -1.0106 7 1 2.1469 4.0340 0.0014 8 7 1.3575 4.4472 -1.9011 9 6 3.6426 3.6616 -1.5036 10 6 4.1926 5.0845 -1.3858 11 6 5.6191 5.1134 -1.8708 12 1 6.0866 4.2077 -2.2278 13 6 6.3271 6.2965 -1.8598 14 7 5.7577 7.3996 -1.4256 15 14 8.0952 6.3326 -2.4616 16 1 8.1164 6.6218 -3.9180 17 1 8.8435 7.3901 -1.7360 18 1 8.7308 5.0144 -2.2094 19 6 2.0324 -0.7104 -1.2304 20 8 1.3397 -1.5363 -1.7763 21 8 3.2494 -0.4257 -1.7199 22 6 2.0400 -0.7212 1.2493 23 6 2.9840 -1.9076 1.0442 24 6 1.5416 -2.1467 1.4950 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 2.5759 1.6985 0.7275 29 1 1.6332 5.4172 -1.8689 30 1 1.3847 4.0945 -2.8460 31 1 4.2469 2.9872 -0.8967 32 1 3.6784 3.3433 -2.5455 33 1 3.5884 5.7588 -1.9926 34 1 4.1569 5.4027 -0.3439 35 1 6.2558 8.2318 -1.4175 36 1 3.5279 -0.9069 -2.5110 37 1 2.2074 -0.0892 2.1215 38 1 3.2415 -2.1747 0.0193 39 1 3.7729 -2.0564 1.7815 40 1 1.3816 -2.4528 2.5288 41 1 0.8501 -2.5706 0.7668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691614407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:37 Heat of formation + Delta-G solvation = -111.479822 kcal Electronic energy + Delta-G solvation = -23385.188226 eV Core-core repulsion = 19879.542316 eV Total energy + Delta-G solvation = -3505.645911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26607 -39.34696 -37.80381 -36.11585 -35.58405 -34.50369 -32.86826 -30.57073 -29.89185 -26.66783 -25.59063 -23.89911 -23.29663 -22.55428 -20.75013 -19.91201 -19.69863 -18.24814 -17.65921 -17.20701 -16.54942 -16.17176 -15.10701 -14.92248 -14.73365 -14.67294 -14.39676 -14.07873 -13.68787 -13.51019 -13.11634 -12.98158 -12.50680 -12.34047 -12.16437 -11.86163 -11.75229 -11.70797 -11.49380 -11.10306 -10.94602 -10.85899 -10.71908 -10.65356 -10.58851 -9.99526 -9.89643 -9.30331 -9.22944 -9.18818 -8.44839 -8.21639 -6.09400 -4.12376 2.09275 2.67597 2.91474 3.05386 3.26536 3.33341 3.36289 3.45125 4.14349 4.38648 4.42492 4.54998 4.76089 4.93326 4.96716 5.16104 5.20727 5.26961 5.31252 5.48734 5.53314 5.54808 5.65495 5.68961 5.74691 5.77777 6.13348 6.29217 6.32118 6.47067 6.52453 6.87076 7.36305 7.50459 7.57425 7.63657 7.85114 7.87080 7.88592 8.30055 8.34676 8.93644 9.52616 11.01536 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.004021 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.887006 B = 6962.052406 C = 7476.501928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.224 3.776 3 N -0.719 5.719 4 C 0.531 3.469 5 O -0.531 6.531 6 C 0.077 3.923 7 H 0.098 0.902 8 N -0.831 5.831 9 C -0.136 4.136 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.489 3.511 20 O -0.513 6.513 21 O -0.504 6.504 22 C -0.161 4.161 23 C -0.175 4.175 24 C -0.165 4.165 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.408 0.592 29 H 0.355 0.645 30 H 0.345 0.655 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.406 0.594 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 -16.052 7.317 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.136 3.864 3 N -0.375 5.375 4 C 0.319 3.681 5 O -0.406 6.406 6 C -0.038 4.038 7 H 0.116 0.884 8 N -0.363 5.363 9 C -0.175 4.175 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.329 3.671 20 O -0.401 6.401 21 O -0.314 6.314 22 C -0.180 4.180 23 C -0.212 4.212 24 C -0.203 4.203 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.244 0.756 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.265 0.735 37 H 0.148 0.852 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.662 -16.371 7.333 19.920 hybrid contribution 2.516 0.180 -1.009 2.717 sum -6.147 -16.191 6.324 18.437 Atomic orbital electron populations 1.22143 0.90508 1.03858 1.04603 1.19611 0.95697 0.82117 0.88980 1.46034 1.54773 1.09734 1.26930 1.21004 0.78498 0.87926 0.80686 1.90638 1.37183 1.77102 1.35696 1.21456 0.93376 0.89253 0.99697 0.88417 1.58745 1.57086 1.06805 1.13646 1.22366 0.92200 1.02395 1.00576 1.19109 0.95809 0.89013 0.97373 1.21177 0.97538 0.94652 1.42742 0.92701 1.25005 0.98319 0.95679 0.95275 1.69944 1.37080 0.99456 1.46765 0.86591 0.84771 0.77770 0.78876 1.20639 1.21157 1.19874 1.23549 0.78728 0.79841 0.84949 1.90689 1.56983 1.33443 1.58948 1.84609 1.34450 1.65693 1.46683 1.22364 1.06038 0.91729 0.97841 1.23163 0.93951 1.00987 1.03125 1.23103 0.97462 0.96361 1.03333 0.89488 0.90617 0.90770 0.75568 0.82940 0.84138 0.92285 0.92715 0.96445 0.96314 0.92886 0.73522 0.85245 0.88880 0.87582 0.87661 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 7.72 37.16 0.29 -1.57 16 2 C 0.22 2.69 0.88 -132.97 -0.12 2.57 16 3 N -0.72 -9.02 4.88 -48.68 -0.24 -9.25 16 4 C 0.53 8.48 6.40 -10.98 -0.07 8.41 16 5 O -0.53 -10.02 13.46 5.56 0.07 -9.94 16 6 C 0.08 1.27 3.21 -68.86 -0.22 1.05 16 7 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 8 N -0.83 -14.00 8.94 -5.65 -0.05 -14.05 16 9 C -0.14 -2.61 4.78 -26.73 -0.13 -2.73 16 10 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 11 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 15 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.49 6.89 3.55 36.00 0.13 7.02 16 20 O -0.51 -8.31 16.85 -18.75 -0.32 -8.62 16 21 O -0.50 -6.55 12.69 -39.27 -0.50 -7.04 16 22 C -0.16 -1.42 5.34 -90.62 -0.48 -1.91 16 23 C -0.18 -1.51 9.68 -26.73 -0.26 -1.77 16 24 C -0.17 -1.30 9.56 -26.73 -0.26 -1.55 16 25 H 0.09 1.33 6.17 -51.93 -0.32 1.01 16 26 H 0.07 0.85 6.72 -51.93 -0.35 0.50 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.41 4.17 8.40 -40.82 -0.34 3.83 16 29 H 0.36 6.01 7.55 -39.29 -0.30 5.71 16 30 H 0.35 5.97 8.58 -39.29 -0.34 5.63 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.41 3.75 9.10 45.56 0.41 4.16 16 37 H 0.13 0.89 8.04 -51.93 -0.42 0.47 16 38 H 0.09 0.94 6.19 -51.93 -0.32 0.61 16 39 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.93 7.29 -51.93 -0.38 0.55 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -33.38 339.33 -7.07 -40.45 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -5.21 Total: 15.33 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.66 Total: -2.99 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.45 Total: -48.36 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.74 Total: -25.61 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.38 -7.07 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.032 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds