Wall clock time and date at job start Tue Mar 31 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47048 * 2 1 4 4 C 1.34777 * 119.99880 * 299.99731 * 3 2 1 5 5 O 1.21283 * 120.00223 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99993 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47018 * 319.99583 * 6 4 3 8 8 N 1.46906 * 109.47187 * 200.00134 * 6 4 3 9 9 C 1.52994 * 109.47012 * 80.00326 * 6 4 3 10 10 C 1.53004 * 109.47238 * 184.99957 * 9 6 4 11 11 C 1.50701 * 109.47146 * 179.97438 * 10 9 6 12 12 H 1.08000 * 120.00163 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99659 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00483 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99858 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46818 * 89.99929 * 15 13 11 17 17 H 1.48495 * 109.47059 * 209.99991 * 15 13 11 18 18 H 1.48498 * 109.46948 * 330.00494 * 15 13 11 19 19 C 1.50696 * 109.47191 * 239.99703 * 2 1 3 20 20 O 1.20826 * 120.00424 * 334.99868 * 19 2 1 21 21 O 1.34234 * 119.99775 * 154.99892 * 19 2 1 22 22 C 1.53001 * 109.46772 * 119.99729 * 2 1 3 23 23 C 1.53000 * 117.49684 * 123.62765 * 22 2 1 24 24 C 1.52995 * 117.50056 * 55.00477 * 22 2 1 25 25 H 1.09002 * 109.46845 * 60.00583 * 1 2 3 26 26 H 1.09005 * 109.46445 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47369 * 300.00158 * 1 2 3 28 28 H 0.96996 * 120.00036 * 119.99232 * 3 2 1 29 29 H 1.00896 * 111.00309 * 176.04524 * 8 6 4 30 30 H 1.00902 * 110.99923 * 300.00687 * 8 6 4 31 31 H 1.09003 * 109.46995 * 304.99548 * 9 6 4 32 32 H 1.09003 * 109.47429 * 64.99905 * 9 6 4 33 33 H 1.08993 * 109.46824 * 299.99739 * 10 9 6 34 34 H 1.09003 * 109.46953 * 59.99657 * 10 9 6 35 35 H 0.96994 * 120.00358 * 179.97438 * 14 13 11 36 36 H 0.96695 * 116.99855 * 180.02562 * 21 19 2 37 37 H 1.09005 * 115.54840 * 269.33266 * 22 2 1 38 38 H 1.08997 * 117.50364 * 359.97438 * 23 22 2 39 39 H 1.09007 * 117.49897 * 145.02122 * 23 22 2 40 40 H 1.09001 * 117.50077 * 214.97686 * 24 22 2 41 41 H 1.08999 * 117.50064 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.6928 2.2110 -1.0109 5 8 0.9952 1.8145 -1.9203 6 6 2.1946 3.6320 -1.0106 7 1 2.1469 4.0340 0.0014 8 7 1.3575 4.4472 -1.9011 9 6 3.6426 3.6616 -1.5036 10 6 4.1926 5.0845 -1.3858 11 6 5.6191 5.1134 -1.8708 12 1 6.0866 4.2077 -2.2278 13 6 6.3271 6.2965 -1.8598 14 7 5.7577 7.3996 -1.4256 15 14 8.0952 6.3326 -2.4616 16 1 8.1164 6.6218 -3.9180 17 1 8.8435 7.3901 -1.7360 18 1 8.7308 5.0144 -2.2094 19 6 2.0324 -0.7104 -1.2304 20 8 1.3397 -1.5363 -1.7763 21 8 3.2494 -0.4257 -1.7199 22 6 2.0400 -0.7212 1.2493 23 6 2.9840 -1.9076 1.0442 24 6 1.5416 -2.1467 1.4950 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 2.5759 1.6985 0.7275 29 1 1.6332 5.4172 -1.8689 30 1 1.3847 4.0945 -2.8460 31 1 4.2469 2.9872 -0.8967 32 1 3.6784 3.3433 -2.5455 33 1 3.5884 5.7588 -1.9926 34 1 4.1569 5.4027 -0.3439 35 1 6.2558 8.2318 -1.4175 36 1 3.5279 -0.9069 -2.5110 37 1 2.2074 -0.0892 2.1215 38 1 3.2415 -2.1747 0.0193 39 1 3.7729 -2.0564 1.7815 40 1 1.3816 -2.4528 2.5288 41 1 0.8501 -2.5706 0.7668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691614407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:36 Heat of formation + Delta-G solvation = -137.137408 kcal Electronic energy + Delta-G solvation = -23386.300823 eV Core-core repulsion = 19879.542316 eV Total energy + Delta-G solvation = -3506.758507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31654 -40.59582 -38.67167 -37.21412 -37.08466 -35.56740 -34.82635 -31.66656 -31.61020 -28.17123 -26.79437 -25.47329 -24.28699 -23.19049 -22.37614 -21.02725 -20.82181 -19.33869 -18.94490 -18.38950 -18.13367 -17.46263 -16.53389 -16.10023 -16.00442 -15.95524 -15.76659 -15.33201 -14.80314 -14.75371 -14.46370 -14.37525 -13.99108 -13.48699 -13.35922 -13.24581 -12.94485 -12.82844 -12.65757 -12.63703 -12.49451 -12.36766 -11.81310 -11.75969 -11.63871 -11.47862 -11.30873 -11.27904 -10.69757 -10.54181 -10.31364 -9.63939 -8.19728 -6.29537 1.01545 1.40681 1.41409 1.48645 1.52151 1.84857 2.05547 2.41341 2.73720 3.14251 3.35612 3.63965 3.71785 3.76685 3.92035 4.05557 4.14725 4.18844 4.25186 4.28489 4.59344 4.69419 4.70548 4.74587 4.87209 4.92337 4.97722 5.11568 5.14055 5.18784 5.29898 5.48318 5.49570 5.68567 5.83224 6.06672 6.23733 6.44617 6.47871 6.84011 6.85995 7.14616 7.39517 8.90999 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.004021 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.887006 B = 6962.052406 C = 7476.501928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.220 3.780 3 N -0.702 5.702 4 C 0.533 3.467 5 O -0.562 6.562 6 C 0.083 3.917 7 H 0.116 0.884 8 N -0.830 5.830 9 C -0.118 4.118 10 C 0.030 3.970 11 C -0.543 4.543 12 H 0.054 0.946 13 C 0.007 3.993 14 N -0.927 5.927 15 Si 0.956 3.044 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.265 1.265 19 C 0.485 3.515 20 O -0.542 6.542 21 O -0.509 6.509 22 C -0.162 4.162 23 C -0.181 4.181 24 C -0.156 4.156 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.422 0.578 29 H 0.353 0.647 30 H 0.342 0.658 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.001 0.999 34 H 0.005 0.995 35 H 0.263 0.737 36 H 0.420 0.580 37 H 0.158 0.842 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 -16.958 8.878 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.132 3.868 3 N -0.358 5.358 4 C 0.321 3.679 5 O -0.440 6.440 6 C -0.032 4.032 7 H 0.133 0.867 8 N -0.361 5.361 9 C -0.157 4.157 10 C -0.008 4.008 11 C -0.581 4.581 12 H 0.072 0.928 13 C -0.192 4.192 14 N -0.567 5.567 15 Si 0.782 3.218 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.189 1.189 19 C 0.327 3.673 20 O -0.432 6.432 21 O -0.321 6.321 22 C -0.180 4.180 23 C -0.218 4.218 24 C -0.193 4.193 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.261 0.739 29 H 0.169 0.831 30 H 0.155 0.845 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.280 0.720 37 H 0.175 0.825 38 H 0.091 0.909 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.857 -17.295 8.918 20.985 hybrid contribution 2.266 0.437 -1.520 2.764 sum -5.591 -16.858 7.398 19.240 Atomic orbital electron populations 1.22104 0.90663 1.04051 1.03937 1.19810 0.95672 0.81586 0.89719 1.45864 1.53999 1.09674 1.26229 1.20813 0.78306 0.87829 0.81001 1.90642 1.38719 1.77523 1.37101 1.21405 0.91423 0.90071 1.00287 0.86668 1.58763 1.56972 1.06772 1.13591 1.22098 0.94105 0.99474 1.00072 1.18978 0.94510 0.91420 0.95844 1.21615 0.99163 0.94708 1.42611 0.92785 1.25827 1.02507 0.95385 0.95450 1.70051 1.38727 1.00004 1.47872 0.85578 0.79848 0.78108 0.78308 1.20286 1.20681 1.18943 1.24026 0.78566 0.79442 0.85236 1.90670 1.57708 1.34873 1.59905 1.84578 1.34115 1.65907 1.47510 1.22440 1.06449 0.92232 0.96927 1.23220 0.95000 1.00877 1.02680 1.23175 0.96501 0.95187 1.04413 0.92878 0.90062 0.88560 0.73916 0.83136 0.84497 0.91360 0.94096 0.98030 0.97676 0.92767 0.71989 0.82460 0.90853 0.85594 0.84947 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 7.72 71.98 0.56 -2.92 16 2 C 0.22 4.94 0.88 2.86 0.00 4.95 16 3 N -0.70 -16.29 4.88 -426.33 -2.08 -18.37 16 4 C 0.53 16.51 6.40 87.66 0.56 17.07 16 5 O -0.56 -21.18 13.46 -3.04 -0.04 -21.22 16 6 C 0.08 2.66 3.21 44.17 0.14 2.81 16 7 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 8 N -0.83 -27.83 8.94 -171.80 -1.54 -29.37 16 9 C -0.12 -4.45 4.78 30.59 0.15 -4.30 16 10 C 0.03 1.42 4.74 29.85 0.14 1.56 16 11 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 12 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 13 C 0.01 0.37 5.46 84.65 0.46 0.84 16 14 N -0.93 -53.63 13.29 21.45 0.28 -53.35 16 15 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 19 C 0.48 13.46 3.55 71.23 0.25 13.71 16 20 O -0.54 -17.71 16.85 21.96 0.37 -17.34 16 21 O -0.51 -12.93 12.69 -51.46 -0.65 -13.58 16 22 C -0.16 -2.40 5.34 -10.80 -0.06 -2.45 16 23 C -0.18 -2.68 9.68 30.59 0.30 -2.39 16 24 C -0.16 -2.03 9.56 30.59 0.29 -1.74 16 25 H 0.05 1.62 6.17 -2.39 -0.01 1.61 16 26 H 0.08 1.77 6.72 -2.38 -0.02 1.75 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.42 7.43 8.40 -92.71 -0.78 6.65 16 29 H 0.35 12.01 7.55 -89.70 -0.68 11.34 16 30 H 0.34 11.93 8.58 -89.69 -0.77 11.16 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.00 0.07 6.87 -2.39 -0.02 0.06 16 34 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.42 7.67 9.10 -74.06 -0.67 7.00 16 37 H 0.16 1.47 8.04 -2.38 -0.02 1.45 16 38 H 0.07 1.40 6.19 -2.39 -0.01 1.38 16 39 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.45 7.29 -2.39 -0.02 1.44 16 Total: -1.00 -71.78 339.33 -0.41 -72.18 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -1.81 Total: 38.14 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 3.03 Total: -1.98 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.33 Total: -101.08 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -0.32 Total: -52.15 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -71.78 -0.41 -72.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.953 kcal (2) G-P(sol) polarization free energy of solvation -71.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds