Wall clock time and date at job start Tue Mar 31 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47140 * 2 1 4 4 C 1.34777 * 120.00199 * 60.00218 * 3 2 1 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 3 2 7 7 H 1.09003 * 109.46824 * 319.71785 * 6 4 3 8 8 N 1.46900 * 109.46704 * 199.72391 * 6 4 3 9 9 C 1.53002 * 109.47121 * 79.72099 * 6 4 3 10 10 C 1.52996 * 109.46946 * 185.00076 * 9 6 4 11 11 C 1.50694 * 109.47332 * 179.97438 * 10 9 6 12 12 H 1.08000 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00223 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99937 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99885 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47515 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47340 * 120.00537 * 15 13 11 18 18 H 1.48506 * 109.47296 * 240.00251 * 15 13 11 19 19 C 1.50707 * 109.46753 * 119.99854 * 2 1 3 20 20 O 1.20830 * 119.99708 * 25.00166 * 19 2 1 21 21 O 1.34223 * 119.99663 * 204.99567 * 19 2 1 22 22 C 1.52997 * 109.46784 * 239.99666 * 2 1 3 23 23 C 1.52998 * 117.50443 * 3.75119 * 22 2 1 24 24 C 1.52993 * 117.50258 * 295.08842 * 22 2 1 25 25 H 1.08999 * 109.46696 * 59.99656 * 1 2 3 26 26 H 1.08993 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46762 * 300.00257 * 1 2 3 28 28 H 0.97000 * 119.99484 * 239.99315 * 3 2 1 29 29 H 1.00907 * 110.99710 * 176.04704 * 8 6 4 30 30 H 1.00898 * 110.99811 * 299.99578 * 8 6 4 31 31 H 1.08996 * 109.46933 * 304.99916 * 9 6 4 32 32 H 1.08998 * 109.47170 * 65.00270 * 9 6 4 33 33 H 1.09000 * 109.47119 * 300.00211 * 10 9 6 34 34 H 1.09002 * 109.47419 * 59.99484 * 10 9 6 35 35 H 0.97004 * 119.99765 * 179.97438 * 14 13 11 36 36 H 0.96702 * 116.99752 * 180.02562 * 21 19 2 37 37 H 1.09005 * 115.54476 * 149.42292 * 22 2 1 38 38 H 1.09001 * 117.49178 * 0.02562 * 23 22 2 39 39 H 1.08994 * 117.50263 * 145.01914 * 23 22 2 40 40 H 1.09002 * 117.50480 * 214.98368 * 24 22 2 41 41 H 1.09008 * 117.50035 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6929 2.2111 1.0108 5 8 0.9953 1.8145 1.9202 6 6 2.1901 3.6337 1.0076 7 1 3.2222 3.6570 0.6578 8 7 2.1225 4.1790 2.3700 9 6 1.3168 4.4772 0.0767 10 6 1.8950 5.8901 -0.0238 11 6 1.0353 6.7207 -0.9413 12 1 0.1633 6.2846 -1.4059 13 6 1.3612 8.0377 -1.1867 14 7 2.4227 8.5689 -0.6206 15 14 0.2949 9.0675 -2.3234 16 1 -0.8316 8.2420 -2.8282 17 1 -0.2422 10.2335 -1.5769 18 1 1.1105 9.5460 -3.4685 19 6 2.0323 -0.7104 1.2306 20 8 1.3395 -1.5362 1.7764 21 8 3.2493 -0.4258 1.7200 22 6 2.0400 -0.7213 -1.2492 23 6 0.9987 -1.2032 -2.2613 24 6 1.7329 -2.2146 -1.3776 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.5762 1.6983 -0.7275 29 1 2.5104 5.1098 2.4066 30 1 1.1752 4.1682 2.7172 31 1 1.2960 4.0218 -0.9134 32 1 0.3035 4.5268 0.4751 33 1 1.9159 6.3454 0.9663 34 1 2.9084 5.8405 -0.4222 35 1 2.6522 9.4954 -0.7936 36 1 3.5281 -0.9075 2.5108 37 1 2.9950 -0.3686 -1.6388 38 1 -0.0496 -1.0060 -2.0374 39 1 1.2687 -1.1679 -3.3167 40 1 2.4856 -2.8444 -1.8519 41 1 1.1680 -2.6834 -0.5718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691614413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:46 Heat of formation + Delta-G solvation = -136.295669 kcal Electronic energy + Delta-G solvation = -23232.607372 eV Core-core repulsion = 19725.885365 eV Total energy + Delta-G solvation = -3506.722006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.22327 -40.55210 -38.92477 -37.17836 -37.05378 -35.46526 -34.82384 -31.66702 -31.42754 -28.24300 -27.06744 -25.52158 -24.09635 -23.13908 -22.37596 -21.00594 -20.70697 -19.27269 -18.93781 -18.22562 -18.18067 -17.41915 -16.59499 -16.36884 -16.14884 -15.88943 -15.72661 -15.17328 -14.94969 -14.69727 -14.48401 -14.40536 -13.93712 -13.49639 -13.27395 -13.23691 -12.92274 -12.68826 -12.65499 -12.61935 -12.48354 -12.18470 -11.91490 -11.77618 -11.69186 -11.46090 -11.26503 -11.24874 -10.69099 -10.54366 -10.30078 -9.63256 -8.19581 -6.29430 1.05089 1.40147 1.42118 1.48077 1.53796 1.85432 2.07942 2.41728 2.81620 3.14624 3.37620 3.63367 3.71649 3.77410 3.92595 4.04906 4.15370 4.21338 4.25782 4.30405 4.56485 4.67091 4.69646 4.78248 4.86637 4.95148 4.98339 5.12052 5.19670 5.23719 5.27953 5.49899 5.52003 5.68599 5.83426 6.07238 6.23588 6.45067 6.48167 6.86626 6.88321 7.14764 7.39839 8.91366 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023157 B = 0.003849 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.847457 B = 7273.756741 C = 7986.406086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.223 3.777 3 N -0.702 5.702 4 C 0.533 3.467 5 O -0.562 6.562 6 C 0.084 3.916 7 H 0.112 0.888 8 N -0.831 5.831 9 C -0.120 4.120 10 C 0.029 3.971 11 C -0.542 4.542 12 H 0.056 0.944 13 C 0.006 3.994 14 N -0.927 5.927 15 Si 0.957 3.043 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.277 1.277 19 C 0.487 3.513 20 O -0.541 6.541 21 O -0.507 6.507 22 C -0.176 4.176 23 C -0.154 4.154 24 C -0.171 4.171 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.422 0.578 29 H 0.353 0.647 30 H 0.343 0.657 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.001 0.999 34 H 0.004 0.996 35 H 0.263 0.737 36 H 0.421 0.579 37 H 0.142 0.858 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 -19.878 -3.749 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 N -0.358 5.358 4 C 0.321 3.679 5 O -0.439 6.439 6 C -0.031 4.031 7 H 0.130 0.870 8 N -0.362 5.362 9 C -0.160 4.160 10 C -0.008 4.008 11 C -0.580 4.580 12 H 0.074 0.926 13 C -0.193 4.193 14 N -0.567 5.567 15 Si 0.783 3.217 16 H -0.189 1.189 17 H -0.208 1.208 18 H -0.203 1.203 19 C 0.329 3.671 20 O -0.431 6.431 21 O -0.319 6.319 22 C -0.195 4.195 23 C -0.190 4.190 24 C -0.209 4.209 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.260 0.740 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.019 0.981 34 H 0.022 0.978 35 H 0.072 0.928 36 H 0.282 0.718 37 H 0.160 0.840 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.315 -20.629 -3.066 20.897 hybrid contribution -0.543 1.469 -0.271 1.589 sum 0.772 -19.160 -3.338 19.464 Atomic orbital electron populations 1.22238 0.91322 1.03887 1.03875 1.19611 0.95227 0.81468 0.90199 1.45873 1.54191 1.09721 1.25994 1.20808 0.78677 0.87687 0.80764 1.90641 1.38729 1.77605 1.36967 1.21390 1.01362 0.89692 0.90670 0.87027 1.58751 1.27424 1.29774 1.20254 1.22135 0.98019 0.96665 0.99194 1.18979 0.95345 0.90925 0.95584 1.21650 1.11366 0.96701 1.28258 0.92602 1.25843 0.96452 0.99333 0.97648 1.70068 1.27230 1.14377 1.45055 0.85513 0.78979 0.78540 0.78700 1.18889 1.20799 1.20306 1.23965 0.78697 0.79425 0.85008 1.90663 1.57706 1.34843 1.59864 1.84519 1.34013 1.65743 1.47645 1.22393 1.03101 0.98215 0.95762 1.23350 0.97730 1.00658 0.97283 1.23148 1.04193 0.90373 1.03166 0.88762 0.89955 0.92802 0.73960 0.83167 0.84418 0.91036 0.93740 0.98073 0.97786 0.92803 0.71792 0.84017 0.87614 0.85832 0.86154 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 6.51 71.98 0.47 -3.27 16 2 C 0.22 5.02 0.88 2.86 0.00 5.02 16 3 N -0.70 -16.41 4.88 -426.31 -2.08 -18.48 16 4 C 0.53 16.53 6.40 87.66 0.56 17.09 16 5 O -0.56 -21.12 13.46 -3.04 -0.04 -21.16 16 6 C 0.08 2.70 3.21 44.17 0.14 2.84 16 7 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 8 N -0.83 -28.05 8.94 -171.79 -1.54 -29.59 16 9 C -0.12 -4.46 4.78 30.59 0.15 -4.31 16 10 C 0.03 1.37 4.74 29.84 0.14 1.51 16 11 C -0.54 -29.00 9.11 25.60 0.23 -28.76 16 12 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 13 C 0.01 0.31 5.46 84.65 0.46 0.77 16 14 N -0.93 -53.57 13.29 21.45 0.28 -53.29 16 15 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 16 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 C 0.49 13.11 5.26 71.24 0.37 13.49 16 20 O -0.54 -17.29 16.47 21.95 0.36 -16.92 16 21 O -0.51 -11.74 13.03 -51.35 -0.67 -12.41 16 22 C -0.18 -2.67 5.33 -10.80 -0.06 -2.73 16 23 C -0.15 -1.84 9.51 30.62 0.29 -1.55 16 24 C -0.17 -2.37 9.48 30.61 0.29 -2.08 16 25 H 0.09 1.90 7.22 -2.39 -0.02 1.88 16 26 H 0.08 1.83 6.91 -2.39 -0.02 1.82 16 27 H 0.05 1.68 6.17 -2.39 -0.01 1.67 16 28 H 0.42 7.57 8.40 -92.71 -0.78 6.79 16 29 H 0.35 12.10 7.55 -89.69 -0.68 11.42 16 30 H 0.34 11.91 8.58 -89.70 -0.77 11.14 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.42 6.53 9.10 -74.06 -0.67 5.85 16 37 H 0.14 1.64 8.04 -2.38 -0.02 1.62 16 38 H 0.11 1.34 5.82 -2.39 -0.01 1.32 16 39 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.51 7.44 -2.38 -0.02 1.50 16 Total: -1.00 -71.13 338.57 -0.40 -71.53 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -1.80 Total: 37.65 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 3.06 Total: -1.97 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -3.33 Total: -101.36 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.35 Total: -50.49 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -71.13 -0.40 -71.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.764 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds