Wall clock time and date at job start Tue Mar 31 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99936 * 2 1 4 4 H 1.48504 * 109.47156 * 270.00051 * 3 2 1 5 5 H 1.48504 * 109.47408 * 30.00150 * 3 2 1 6 6 H 1.48504 * 109.47153 * 150.00140 * 3 2 1 7 7 C 1.37869 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47230 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47148 * 304.99859 * 11 10 9 13 13 N 1.46903 * 109.46816 * 65.00111 * 11 10 9 14 14 C 1.50696 * 109.47206 * 185.00170 * 11 10 9 15 15 O 1.21284 * 120.00109 * 260.00118 * 14 11 10 16 16 N 1.34777 * 120.00137 * 80.00333 * 14 11 10 17 17 C 1.46506 * 119.99873 * 180.02562 * 16 14 11 18 18 C 1.50700 * 110.43416 * 57.45513 * 17 16 14 19 19 O 1.20829 * 119.99606 * 145.70147 * 18 17 16 20 20 O 1.34227 * 120.00301 * 325.69855 * 18 17 16 21 21 C 1.54892 * 110.48389 * 294.77162 * 17 16 14 22 22 C 1.54895 * 102.74878 * 279.26409 * 21 17 16 23 23 C 1.54262 * 104.19500 * 322.06157 * 22 21 17 24 24 C 1.53880 * 106.60322 * 23.60766 * 23 22 21 25 25 H 0.97008 * 119.99772 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47115 * 59.99470 * 9 7 2 27 27 H 1.09004 * 109.46828 * 300.00144 * 9 7 2 28 28 H 1.09004 * 109.47216 * 59.99945 * 10 9 7 29 29 H 1.08996 * 109.47484 * 300.00232 * 10 9 7 30 30 H 1.00893 * 110.99868 * 59.99964 * 13 11 10 31 31 H 1.00903 * 110.99559 * 183.95491 * 13 11 10 32 32 H 0.96999 * 120.00047 * 359.97438 * 16 14 11 33 33 H 0.96700 * 117.00046 * 180.02562 * 20 18 17 34 34 H 1.08992 * 110.75663 * 37.58177 * 21 17 16 35 35 H 1.09000 * 110.75339 * 160.95200 * 21 17 16 36 36 H 1.08993 * 110.48670 * 203.37880 * 22 21 17 37 37 H 1.09003 * 110.48385 * 80.73332 * 22 21 17 38 38 H 1.09001 * 110.03517 * 264.32348 * 23 22 21 39 39 H 1.08997 * 110.03452 * 142.89427 * 23 22 21 40 40 H 1.08997 * 110.02892 * 240.71721 * 24 23 22 41 41 H 1.08999 * 110.03352 * 119.28153 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7883 -5.0068 0.8433 13 7 0.7280 -5.1188 -1.2538 14 6 2.4547 -6.1298 0.1251 15 8 2.7863 -6.7536 -0.8608 16 7 2.9579 -6.4585 1.3313 17 6 3.9059 -7.5691 1.4516 18 6 5.1076 -7.3325 0.5736 19 8 6.1992 -7.7092 0.9294 20 8 4.9654 -6.7035 -0.6036 21 6 3.2199 -8.9092 1.0871 22 6 2.4633 -9.2712 2.3893 23 6 3.4212 -8.8351 3.5171 24 6 4.3385 -7.7529 2.9210 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 1.3475 -5.1033 -2.0499 31 1 0.1636 -5.9552 -1.2510 32 1 2.6931 -5.9594 2.1198 33 1 5.7649 -6.5751 -1.1321 34 1 2.5229 -8.7739 0.2602 35 1 3.9623 -9.6704 0.8473 36 1 2.2800 -10.3445 2.4381 37 1 1.5251 -8.7197 2.4512 38 1 4.0156 -9.6853 3.8518 39 1 2.8530 -8.4246 4.3517 40 1 5.3778 -8.0780 2.9663 41 1 4.2153 -6.8172 3.4663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691615741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:48 Heat of formation + Delta-G solvation = -144.018359 kcal Electronic energy + Delta-G solvation = -23473.118210 eV Core-core repulsion = 19966.061322 eV Total energy + Delta-G solvation = -3507.056887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16270 -39.34751 -37.88180 -36.02311 -35.10207 -33.57889 -32.78876 -30.10077 -29.18316 -29.02767 -26.22742 -23.72653 -23.55048 -21.41422 -20.53541 -19.87298 -19.59853 -18.32901 -17.35154 -16.97952 -16.26091 -16.11963 -15.50375 -15.45013 -15.03513 -14.52936 -14.29725 -14.22337 -13.64397 -13.41907 -13.21750 -12.50811 -12.31414 -12.04979 -11.92209 -11.78262 -11.64851 -11.55880 -11.43557 -11.37283 -10.90350 -10.88839 -10.65737 -10.59423 -10.50746 -10.01653 -9.78613 -9.35647 -9.17687 -8.99693 -8.34449 -8.19583 -5.94203 -3.96253 2.03900 2.77436 3.02092 3.14835 3.34585 3.40931 3.43777 4.00190 4.19806 4.49774 4.61857 4.89224 4.95926 5.04774 5.05790 5.14982 5.26350 5.28377 5.41478 5.45617 5.54174 5.59638 5.67463 5.75210 5.83735 5.88026 5.98479 6.32510 6.44413 6.49773 6.67064 7.09168 7.35853 7.56390 7.75923 7.80121 7.89759 7.96113 8.12952 8.34689 8.48357 9.11819 9.67006 11.16665 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.003954 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.525995 B = 7079.652699 C = 7275.395705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.093 4.093 11 C 0.081 3.919 12 H 0.096 0.904 13 N -0.806 5.806 14 C 0.482 3.518 15 O -0.514 6.514 16 N -0.720 5.720 17 C 0.182 3.818 18 C 0.482 3.518 19 O -0.526 6.526 20 O -0.472 6.472 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.124 4.124 25 H 0.259 0.741 26 H 0.035 0.965 27 H 0.012 0.988 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.348 0.652 31 H 0.333 0.667 32 H 0.407 0.593 33 H 0.396 0.604 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.416 -19.077 5.638 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.132 4.132 11 C -0.035 4.035 12 H 0.114 0.886 13 N -0.334 5.334 14 C 0.267 3.733 15 O -0.389 6.389 16 N -0.376 5.376 17 C 0.093 3.907 18 C 0.323 3.677 19 O -0.415 6.415 20 O -0.280 6.280 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.161 4.161 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.243 0.757 33 H 0.253 0.747 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.068 -18.853 5.421 20.261 hybrid contribution 1.575 0.425 -0.071 1.633 sum 6.643 -18.429 5.350 20.307 Atomic orbital electron populations 1.69977 1.05938 1.26393 1.50889 1.24982 0.94794 0.99022 0.95487 0.86663 0.79825 0.83806 0.78077 1.20725 1.21287 1.20034 1.21280 0.92874 0.91354 1.50533 0.93048 1.19019 0.93576 0.89869 0.98161 1.21629 0.98755 0.92158 1.00628 1.21811 0.93419 0.93260 0.94999 0.88609 1.58999 1.26912 1.44212 1.03298 1.22762 0.82176 0.85925 0.82420 1.90662 1.58390 1.53349 1.36485 1.46263 1.46216 1.33847 1.11269 1.20858 0.85872 0.89710 0.94309 1.23678 0.89981 0.73366 0.80643 1.90684 1.27950 1.49225 1.73671 1.85040 1.42007 1.70349 1.30607 1.22827 1.00096 0.93586 0.99397 1.22355 0.98586 1.01480 0.93399 1.22140 0.97325 0.98213 0.98291 1.22487 1.02206 1.00757 0.90683 0.93113 0.94691 0.96922 0.93043 0.92808 0.83772 0.85542 0.75682 0.74717 0.89207 0.90374 0.90919 0.90940 0.91096 0.90945 0.88383 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 10 C -0.09 -1.83 4.78 -26.73 -0.13 -1.96 16 11 C 0.08 1.28 3.15 -68.87 -0.22 1.06 16 12 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 13 N -0.81 -12.89 8.44 -5.65 -0.05 -12.94 16 14 C 0.48 6.88 5.98 -10.99 -0.07 6.81 16 15 O -0.51 -8.30 11.89 -19.23 -0.23 -8.53 16 16 N -0.72 -8.33 5.10 -47.13 -0.24 -8.57 16 17 C 0.18 2.05 0.76 -131.31 -0.10 1.95 16 18 C 0.48 6.61 7.18 36.01 0.26 6.87 16 19 O -0.53 -8.04 16.34 -18.75 -0.31 -8.35 16 20 O -0.47 -6.53 9.45 -47.45 -0.45 -6.98 16 21 C -0.12 -1.24 5.72 -24.73 -0.14 -1.38 16 22 C -0.12 -0.94 6.79 -25.07 -0.17 -1.11 16 23 C -0.12 -0.87 6.80 -25.61 -0.17 -1.04 16 24 C -0.12 -1.11 5.97 -25.61 -0.15 -1.27 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.35 5.69 8.58 -39.30 -0.34 5.35 16 31 H 0.33 4.56 9.06 -39.29 -0.36 4.20 16 32 H 0.41 3.98 8.28 -40.82 -0.34 3.65 16 33 H 0.40 3.97 9.10 45.56 0.41 4.39 16 34 H 0.09 1.08 6.63 -51.93 -0.34 0.73 16 35 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.99 6.79 -51.93 -0.35 0.64 16 41 H 0.08 0.66 7.76 -51.93 -0.40 0.25 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -33.66 335.12 -7.40 -41.06 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.46 Total: 11.44 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.44 Total: -2.81 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.45 Total: -47.51 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.98 Total: -23.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.66 -7.40 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691615741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.959 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds