Wall clock time and date at job start Tue Mar 31 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99936 * 2 1 4 4 H 1.48504 * 109.47156 * 270.00051 * 3 2 1 5 5 H 1.48504 * 109.47408 * 30.00150 * 3 2 1 6 6 H 1.48504 * 109.47153 * 150.00140 * 3 2 1 7 7 C 1.37869 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00205 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47230 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47148 * 304.99859 * 11 10 9 13 13 N 1.46903 * 109.46816 * 65.00111 * 11 10 9 14 14 C 1.50696 * 109.47206 * 185.00170 * 11 10 9 15 15 O 1.21284 * 120.00109 * 260.00118 * 14 11 10 16 16 N 1.34777 * 120.00137 * 80.00333 * 14 11 10 17 17 C 1.46506 * 119.99873 * 180.02562 * 16 14 11 18 18 C 1.50700 * 110.43416 * 57.45513 * 17 16 14 19 19 O 1.20829 * 119.99606 * 145.70147 * 18 17 16 20 20 O 1.34227 * 120.00301 * 325.69855 * 18 17 16 21 21 C 1.54892 * 110.48389 * 294.77162 * 17 16 14 22 22 C 1.54895 * 102.74878 * 279.26409 * 21 17 16 23 23 C 1.54262 * 104.19500 * 322.06157 * 22 21 17 24 24 C 1.53880 * 106.60322 * 23.60766 * 23 22 21 25 25 H 0.97008 * 119.99772 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47115 * 59.99470 * 9 7 2 27 27 H 1.09004 * 109.46828 * 300.00144 * 9 7 2 28 28 H 1.09004 * 109.47216 * 59.99945 * 10 9 7 29 29 H 1.08996 * 109.47484 * 300.00232 * 10 9 7 30 30 H 1.00893 * 110.99868 * 59.99964 * 13 11 10 31 31 H 1.00903 * 110.99559 * 183.95491 * 13 11 10 32 32 H 0.96999 * 120.00047 * 359.97438 * 16 14 11 33 33 H 0.96700 * 117.00046 * 180.02562 * 20 18 17 34 34 H 1.08992 * 110.75663 * 37.58177 * 21 17 16 35 35 H 1.09000 * 110.75339 * 160.95200 * 21 17 16 36 36 H 1.08993 * 110.48670 * 203.37880 * 22 21 17 37 37 H 1.09003 * 110.48385 * 80.73332 * 22 21 17 38 38 H 1.09001 * 110.03517 * 264.32348 * 23 22 21 39 39 H 1.08997 * 110.03452 * 142.89427 * 23 22 21 40 40 H 1.08997 * 110.02892 * 240.71721 * 24 23 22 41 41 H 1.08999 * 110.03352 * 119.28153 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7883 -5.0068 0.8433 13 7 0.7280 -5.1188 -1.2538 14 6 2.4547 -6.1298 0.1251 15 8 2.7863 -6.7536 -0.8608 16 7 2.9579 -6.4585 1.3313 17 6 3.9059 -7.5691 1.4516 18 6 5.1076 -7.3325 0.5736 19 8 6.1992 -7.7092 0.9294 20 8 4.9654 -6.7035 -0.6036 21 6 3.2199 -8.9092 1.0871 22 6 2.4633 -9.2712 2.3893 23 6 3.4212 -8.8351 3.5171 24 6 4.3385 -7.7529 2.9210 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 1.3475 -5.1033 -2.0499 31 1 0.1636 -5.9552 -1.2510 32 1 2.6931 -5.9594 2.1198 33 1 5.7649 -6.5751 -1.1321 34 1 2.5229 -8.7739 0.2602 35 1 3.9623 -9.6704 0.8473 36 1 2.2800 -10.3445 2.4381 37 1 1.5251 -8.7197 2.4512 38 1 4.0156 -9.6853 3.8518 39 1 2.8530 -8.4246 4.3517 40 1 5.3778 -8.0780 2.9663 41 1 4.2153 -6.8172 3.4663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691615741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:47 Heat of formation + Delta-G solvation = -169.242259 kcal Electronic energy + Delta-G solvation = -23474.212000 eV Core-core repulsion = 19966.061322 eV Total energy + Delta-G solvation = -3508.150678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.17096 -40.50367 -38.78739 -37.15365 -36.58716 -34.76811 -34.52210 -31.87768 -29.95951 -29.88947 -27.90384 -25.37471 -24.49214 -22.68025 -21.74022 -20.91119 -20.66965 -19.37826 -18.62462 -18.28289 -17.86280 -17.22771 -16.76341 -16.47307 -16.33789 -15.96817 -15.54128 -15.34860 -14.88924 -14.52252 -14.26070 -14.13100 -13.77605 -13.38031 -13.31736 -12.83551 -12.79538 -12.59268 -12.48335 -12.45354 -12.26982 -12.19974 -12.09454 -11.74261 -11.68677 -11.53275 -11.32356 -11.17708 -10.86961 -10.46842 -10.19836 -9.52616 -8.12376 -6.22156 0.98843 1.42529 1.43353 1.53700 1.64092 2.04181 2.15530 2.45626 3.20834 3.22060 3.45731 3.65415 3.89012 3.99962 4.17860 4.27061 4.31053 4.37014 4.39345 4.44151 4.60817 4.75135 4.83150 4.90648 5.00384 5.00985 5.15194 5.20890 5.29755 5.37120 5.41739 5.51661 5.59474 5.88459 6.01926 6.17035 6.33092 6.48792 6.60334 6.90648 6.96975 7.25025 7.45902 8.98703 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.003954 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.525995 B = 7079.652699 C = 7275.395705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.039 3.961 10 C -0.079 4.079 11 C 0.089 3.911 12 H 0.109 0.891 13 N -0.819 5.819 14 C 0.489 3.511 15 O -0.532 6.532 16 N -0.706 5.706 17 C 0.177 3.823 18 C 0.477 3.523 19 O -0.547 6.547 20 O -0.485 6.485 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.121 4.121 25 H 0.262 0.738 26 H 0.005 0.995 27 H -0.005 1.005 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.345 0.655 31 H 0.346 0.654 32 H 0.418 0.582 33 H 0.408 0.592 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.972 -19.571 6.990 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.117 4.117 11 C -0.027 4.027 12 H 0.127 0.873 13 N -0.348 5.348 14 C 0.274 3.726 15 O -0.408 6.408 16 N -0.362 5.362 17 C 0.088 3.912 18 C 0.320 3.680 19 O -0.438 6.438 20 O -0.295 6.295 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.013 0.987 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.256 0.744 33 H 0.267 0.733 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.633 -19.361 6.794 21.277 hybrid contribution 1.411 0.560 -0.535 1.609 sum 7.044 -18.801 6.259 21.030 Atomic orbital electron populations 1.70103 1.07557 1.27441 1.51834 1.25858 0.95664 1.02869 0.95055 0.85582 0.78778 0.79201 0.78262 1.20247 1.20729 1.18925 1.21738 0.93270 0.92856 1.50215 0.92835 1.18834 0.93909 0.91319 0.95770 1.21342 0.97577 0.92294 1.00531 1.21586 0.93674 0.91982 0.95473 0.87306 1.58969 1.27231 1.45308 1.03270 1.22268 0.81857 0.85452 0.82986 1.90665 1.58866 1.53907 1.37358 1.46079 1.45509 1.33863 1.10791 1.21119 0.84911 0.89766 0.95359 1.24209 0.90476 0.72740 0.80621 1.90668 1.28891 1.50103 1.74097 1.85024 1.43169 1.70303 1.31011 1.22812 0.99808 0.92949 1.00225 1.22356 0.98371 1.02515 0.91978 1.22144 0.96967 0.97926 0.98290 1.22524 1.02028 1.02145 0.89139 0.92961 0.97611 0.98686 0.91891 0.94065 0.84135 0.84020 0.74389 0.73298 0.91049 0.90515 0.89453 0.90746 0.90111 0.89219 0.89424 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.04 1.98 4.86 29.85 0.15 2.13 16 10 C -0.08 -3.08 4.78 30.59 0.15 -2.93 16 11 C 0.09 2.73 3.15 44.17 0.14 2.87 16 12 H 0.11 3.07 8.14 -2.39 -0.02 3.06 16 13 N -0.82 -26.04 8.44 -171.80 -1.45 -27.49 16 14 C 0.49 13.44 5.98 87.66 0.52 13.97 16 15 O -0.53 -16.84 11.89 20.66 0.25 -16.59 16 16 N -0.71 -15.16 5.10 -421.42 -2.15 -17.31 16 17 C 0.18 3.73 0.76 3.93 0.00 3.74 16 18 C 0.48 12.76 7.18 71.24 0.51 13.27 16 19 O -0.55 -16.46 16.34 21.96 0.36 -16.10 16 20 O -0.49 -13.25 9.45 -43.55 -0.41 -13.67 16 21 C -0.12 -2.28 5.72 31.89 0.18 -2.10 16 22 C -0.11 -1.48 6.79 31.67 0.22 -1.27 16 23 C -0.12 -1.29 6.80 31.32 0.21 -1.08 16 24 C -0.12 -1.91 5.97 31.32 0.19 -1.72 16 25 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 26 H 0.01 0.31 7.75 -2.39 -0.02 0.29 16 27 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.35 11.33 8.58 -89.70 -0.77 10.56 16 31 H 0.35 9.29 9.06 -89.69 -0.81 8.47 16 32 H 0.42 7.19 8.28 -92.71 -0.77 6.42 16 33 H 0.41 8.15 9.10 -74.06 -0.67 7.48 16 34 H 0.07 1.65 6.63 -2.39 -0.02 1.63 16 35 H 0.08 1.48 8.05 -2.39 -0.02 1.46 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 1.63 6.79 -2.39 -0.02 1.61 16 41 H 0.09 1.25 7.76 -2.39 -0.02 1.23 16 Total: -1.00 -72.13 335.12 -0.08 -72.21 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -1.94 Total: 31.38 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 2.96 Total: -2.78 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -3.31 Total: -100.70 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: 0.19 Total: -46.36 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -72.13 -0.08 -72.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691615741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.035 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds