Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99618 * 2 1 4 4 H 1.48504 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47680 * 299.99852 * 3 2 1 6 6 H 1.48502 * 109.47300 * 60.00219 * 3 2 1 7 7 C 1.37870 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47589 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47218 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46978 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.47344 * 54.99782 * 12 11 10 14 14 N 1.46899 * 109.47525 * 294.99623 * 12 11 10 15 15 C 1.50701 * 109.47220 * 174.99717 * 12 11 10 16 16 O 1.21277 * 120.00099 * 99.99946 * 15 12 11 17 17 N 1.34778 * 119.99998 * 280.00323 * 15 12 11 18 18 C 1.46500 * 119.99919 * 180.02562 * 17 15 12 19 19 H 1.09002 * 112.85132 * 25.33083 * 18 17 15 20 20 C 1.53781 * 113.61711 * 156.52821 * 18 17 15 21 21 C 1.53777 * 87.08336 * 140.06028 * 20 18 17 22 22 H 1.09008 * 113.61204 * 89.11878 * 21 20 18 23 23 C 1.50697 * 113.61446 * 219.93407 * 21 20 18 24 24 O 1.20824 * 120.00372 * 0.02562 * 23 21 20 25 25 O 1.34232 * 119.99713 * 180.02562 * 23 21 20 26 26 C 1.53775 * 87.07992 * 334.56762 * 21 20 18 27 27 H 0.97001 * 120.00406 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46793 * 59.99690 * 9 7 2 29 29 H 1.09001 * 109.47124 * 300.00107 * 9 7 2 30 30 H 1.08997 * 109.47092 * 59.99615 * 10 9 7 31 31 H 1.09008 * 109.47154 * 299.99845 * 10 9 7 32 32 H 1.08997 * 109.47510 * 59.99740 * 11 10 9 33 33 H 1.08996 * 109.46910 * 299.99516 * 11 10 9 34 34 H 1.00901 * 111.00068 * 300.00543 * 14 12 11 35 35 H 1.00905 * 110.99765 * 63.95026 * 14 12 11 36 36 H 0.96998 * 120.00229 * 359.97438 * 17 15 12 37 37 H 1.08997 * 113.61673 * 254.61577 * 20 18 17 38 38 H 1.09005 * 113.61396 * 25.51405 * 20 18 17 39 39 H 0.96698 * 116.99574 * 179.97438 * 25 23 21 40 40 H 1.08993 * 113.61636 * 270.87622 * 26 21 20 41 41 H 1.09008 * 113.61006 * 139.97865 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1499 0.0018 13 1 3.1583 -6.0431 0.8442 14 7 3.2387 -6.1417 -1.2528 15 6 1.7253 -7.4515 0.1251 16 8 1.5137 -8.1252 -0.8609 17 7 1.2901 -7.8670 1.3311 18 6 0.5621 -9.1326 1.4510 19 1 0.8009 -9.8356 0.6529 20 6 0.6295 -9.7513 2.8573 21 6 -0.8498 -10.1301 2.6760 22 1 -0.9971 -11.1058 2.2127 23 6 -1.6779 -9.9425 3.9210 24 8 -1.1629 -9.5286 4.9325 25 8 -2.9879 -10.2352 3.9061 26 6 -0.9474 -8.9572 1.6863 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6038 0.8922 31 1 2.8727 -3.6047 -0.8878 32 1 0.8547 -5.0449 -0.8894 33 1 0.8528 -5.0446 0.8905 34 1 2.6270 -6.2395 -2.0493 35 1 3.8004 -5.3069 -1.3287 36 1 1.4596 -7.3284 2.1199 37 1 1.2955 -10.6115 2.9244 38 1 0.7993 -9.0206 3.6481 39 1 -3.4775 -10.0990 4.7287 40 1 -1.2088 -8.0095 2.1569 41 1 -1.5546 -9.1764 0.8080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693356395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -131.910200 kcal Electronic energy + Delta-G solvation = -21900.381950 eV Core-core repulsion = 18393.850112 eV Total energy + Delta-G solvation = -3506.531838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.15266 -39.92133 -38.33249 -36.41347 -35.94961 -33.56585 -33.35305 -31.25857 -28.19349 -27.12083 -26.19071 -25.21943 -22.90417 -21.78688 -20.50987 -20.19658 -19.72115 -18.54897 -17.53388 -17.33742 -16.34532 -16.23197 -15.69342 -15.49234 -14.96205 -14.65719 -14.58492 -14.46599 -13.90416 -13.36813 -13.32984 -12.94648 -12.73030 -12.47958 -12.06941 -11.97106 -11.86317 -11.80437 -11.60468 -11.23812 -11.13620 -10.85380 -10.75419 -10.73223 -10.57301 -9.84553 -9.77681 -9.40710 -9.18292 -9.14553 -8.50078 -8.39732 -6.04825 -4.07809 1.80296 2.58630 2.65799 3.14319 3.27786 3.35587 3.39300 3.89693 3.99018 4.36004 4.41839 4.46448 4.75340 4.83754 4.95076 5.16951 5.21631 5.22718 5.30077 5.31151 5.31450 5.47097 5.54801 5.74031 5.82663 5.95012 6.12366 6.23366 6.35027 6.55019 6.71290 7.00009 7.14165 7.45276 7.52349 7.58718 7.60884 7.73227 7.94261 8.22632 8.36202 8.99584 9.56957 11.06398 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.002965 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.513384 B = 9440.609861 C =10564.580865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.147 4.147 12 C 0.074 3.926 13 H 0.100 0.900 14 N -0.830 5.830 15 C 0.527 3.473 16 O -0.534 6.534 17 N -0.723 5.723 18 C 0.128 3.872 19 H 0.121 0.879 20 C -0.127 4.127 21 C -0.110 4.110 22 H 0.129 0.871 23 C 0.490 3.510 24 O -0.513 6.513 25 O -0.515 6.515 26 C -0.135 4.135 27 H 0.260 0.740 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.349 0.651 35 H 0.352 0.648 36 H 0.404 0.596 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.410 0.590 40 H 0.093 0.907 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 -21.607 6.264 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.186 4.186 12 C -0.041 4.041 13 H 0.118 0.882 14 N -0.362 5.362 15 C 0.314 3.686 16 O -0.409 6.409 17 N -0.375 5.375 18 C 0.022 3.978 19 H 0.139 0.861 20 C -0.165 4.165 21 C -0.129 4.129 22 H 0.147 0.853 23 C 0.333 3.667 24 O -0.401 6.401 25 O -0.327 6.327 26 C -0.174 4.174 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.239 0.761 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.269 0.731 40 H 0.112 0.888 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.354 -22.579 5.713 23.330 hybrid contribution -0.592 2.188 0.867 2.427 sum -1.946 -20.391 6.580 21.515 Atomic orbital electron populations 1.69971 1.06084 1.26550 1.50830 1.25034 0.94850 0.99335 0.95276 0.86542 0.80118 0.83772 0.77613 1.19708 1.20991 1.21000 1.21283 0.93054 0.91061 1.50608 0.92620 1.19083 0.93936 0.91320 0.97203 1.21652 0.99138 0.93488 1.00385 1.22405 0.98314 0.95129 1.02783 1.21455 0.95527 0.91317 0.95795 0.88235 1.58699 1.28187 1.46078 1.03284 1.20789 0.78003 0.87130 0.82689 1.90652 1.56580 1.56651 1.36992 1.45942 1.58344 1.23016 1.10215 1.22327 0.90594 0.86999 0.97845 0.86097 1.23383 0.93164 1.02237 0.97700 1.22291 0.95051 1.02822 0.92752 0.85267 1.23239 0.80598 0.72944 0.89958 1.90734 1.72705 1.42199 1.34476 1.84550 1.23131 1.80361 1.44630 1.23485 0.98295 0.97113 0.98544 0.93023 0.96711 0.96646 0.93019 0.93318 0.91752 0.91605 0.83739 0.83321 0.76105 0.89475 0.87833 0.73096 0.88828 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.05 4.92 -26.74 -0.13 -2.18 16 11 C -0.15 -2.28 4.84 -26.73 -0.13 -2.41 16 12 C 0.07 0.99 3.21 -68.86 -0.22 0.77 16 13 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 14 N -0.83 -11.41 8.94 -5.65 -0.05 -11.46 16 15 C 0.53 7.15 7.08 -10.98 -0.08 7.07 16 16 O -0.53 -8.92 15.87 5.56 0.09 -8.83 16 17 N -0.72 -7.39 5.36 -53.02 -0.28 -7.67 16 18 C 0.13 1.12 4.22 -67.12 -0.28 0.83 16 19 H 0.12 1.15 7.50 -51.93 -0.39 0.76 16 20 C -0.13 -0.90 7.15 -25.92 -0.19 -1.08 16 21 C -0.11 -0.75 4.26 -90.97 -0.39 -1.14 16 22 H 0.13 0.63 8.14 -51.92 -0.42 0.20 16 23 C 0.49 4.22 7.86 36.00 0.28 4.51 16 24 O -0.51 -6.01 16.66 -18.75 -0.31 -6.32 16 25 O -0.51 -3.47 13.42 -39.26 -0.53 -4.00 16 26 C -0.14 -1.10 7.43 -25.92 -0.19 -1.29 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.89 6.87 -51.92 -0.36 0.53 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.35 4.97 8.58 -39.29 -0.34 4.63 16 35 H 0.35 4.55 7.55 -39.29 -0.30 4.26 16 36 H 0.40 3.41 8.71 -40.82 -0.36 3.06 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.83 7.41 -51.93 -0.38 0.44 16 39 H 0.41 1.17 9.10 45.56 0.41 1.59 16 40 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 41 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -34.88 348.04 -7.47 -42.35 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.47 Total: 8.07 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.87 Total: -7.82 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.40 Total: -45.10 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.75 Total: -19.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.88 -7.47 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693356395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.556 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds