Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99618 * 2 1 4 4 H 1.48504 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47680 * 299.99852 * 3 2 1 6 6 H 1.48502 * 109.47300 * 60.00219 * 3 2 1 7 7 C 1.37870 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47589 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47218 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46978 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.47344 * 54.99782 * 12 11 10 14 14 N 1.46899 * 109.47525 * 294.99623 * 12 11 10 15 15 C 1.50701 * 109.47220 * 174.99717 * 12 11 10 16 16 O 1.21277 * 120.00099 * 99.99946 * 15 12 11 17 17 N 1.34778 * 119.99998 * 280.00323 * 15 12 11 18 18 C 1.46500 * 119.99919 * 180.02562 * 17 15 12 19 19 H 1.09002 * 112.85132 * 25.33083 * 18 17 15 20 20 C 1.53781 * 113.61711 * 156.52821 * 18 17 15 21 21 C 1.53777 * 87.08336 * 140.06028 * 20 18 17 22 22 H 1.09008 * 113.61204 * 89.11878 * 21 20 18 23 23 C 1.50697 * 113.61446 * 219.93407 * 21 20 18 24 24 O 1.20824 * 120.00372 * 0.02562 * 23 21 20 25 25 O 1.34232 * 119.99713 * 180.02562 * 23 21 20 26 26 C 1.53775 * 87.07992 * 334.56762 * 21 20 18 27 27 H 0.97001 * 120.00406 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46793 * 59.99690 * 9 7 2 29 29 H 1.09001 * 109.47124 * 300.00107 * 9 7 2 30 30 H 1.08997 * 109.47092 * 59.99615 * 10 9 7 31 31 H 1.09008 * 109.47154 * 299.99845 * 10 9 7 32 32 H 1.08997 * 109.47510 * 59.99740 * 11 10 9 33 33 H 1.08996 * 109.46910 * 299.99516 * 11 10 9 34 34 H 1.00901 * 111.00068 * 300.00543 * 14 12 11 35 35 H 1.00905 * 110.99765 * 63.95026 * 14 12 11 36 36 H 0.96998 * 120.00229 * 359.97438 * 17 15 12 37 37 H 1.08997 * 113.61673 * 254.61577 * 20 18 17 38 38 H 1.09005 * 113.61396 * 25.51405 * 20 18 17 39 39 H 0.96698 * 116.99574 * 179.97438 * 25 23 21 40 40 H 1.08993 * 113.61636 * 270.87622 * 26 21 20 41 41 H 1.09008 * 113.61006 * 139.97865 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1499 0.0018 13 1 3.1583 -6.0431 0.8442 14 7 3.2387 -6.1417 -1.2528 15 6 1.7253 -7.4515 0.1251 16 8 1.5137 -8.1252 -0.8609 17 7 1.2901 -7.8670 1.3311 18 6 0.5621 -9.1326 1.4510 19 1 0.8009 -9.8356 0.6529 20 6 0.6295 -9.7513 2.8573 21 6 -0.8498 -10.1301 2.6760 22 1 -0.9971 -11.1058 2.2127 23 6 -1.6779 -9.9425 3.9210 24 8 -1.1629 -9.5286 4.9325 25 8 -2.9879 -10.2352 3.9061 26 6 -0.9474 -8.9572 1.6863 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6038 0.8922 31 1 2.8727 -3.6047 -0.8878 32 1 0.8547 -5.0449 -0.8894 33 1 0.8528 -5.0446 0.8905 34 1 2.6270 -6.2395 -2.0493 35 1 3.8004 -5.3069 -1.3287 36 1 1.4596 -7.3284 2.1199 37 1 1.2955 -10.6115 2.9244 38 1 0.7993 -9.0206 3.6481 39 1 -3.4775 -10.0990 4.7287 40 1 -1.2088 -8.0095 2.1569 41 1 -1.5546 -9.1764 0.8080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693356395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -159.026791 kcal Electronic energy + Delta-G solvation = -21901.557814 eV Core-core repulsion = 18393.850112 eV Total energy + Delta-G solvation = -3507.707702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.85237 -40.86595 -39.11292 -37.32877 -37.04820 -35.26155 -34.46238 -32.98072 -29.54329 -28.18319 -26.81546 -26.59801 -24.40806 -22.69584 -21.84790 -21.34949 -20.47346 -19.20312 -18.49212 -18.42879 -18.18012 -16.89941 -16.60926 -16.50367 -16.26713 -16.12959 -15.82955 -15.54672 -14.97692 -14.65062 -14.25825 -14.09535 -13.75153 -13.63979 -13.55644 -13.35335 -12.93657 -12.62157 -12.57136 -12.49831 -12.39323 -12.33625 -12.25964 -11.78978 -11.50029 -11.44215 -11.42346 -11.24148 -10.72681 -10.57183 -10.06104 -9.65367 -8.21059 -6.32200 1.14013 1.39634 1.40322 1.53149 1.59387 1.95729 2.34799 2.40540 3.12581 3.29881 3.36282 3.65601 3.74139 3.79582 3.88981 4.01361 4.11013 4.41010 4.42248 4.52810 4.60613 4.62350 4.67461 4.77315 4.88133 4.94967 5.02121 5.14496 5.19411 5.23932 5.51982 5.52717 5.61302 5.73027 5.84960 6.07392 6.23477 6.50039 6.54377 6.86137 6.97499 7.23680 7.37754 8.90765 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.002965 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.513384 B = 9440.609861 C =10564.580865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.023 3.977 10 C -0.095 4.095 11 C -0.134 4.134 12 C 0.082 3.918 13 H 0.121 0.879 14 N -0.832 5.832 15 C 0.526 3.474 16 O -0.569 6.569 17 N -0.711 5.711 18 C 0.122 3.878 19 H 0.117 0.883 20 C -0.117 4.117 21 C -0.102 4.102 22 H 0.155 0.845 23 C 0.494 3.506 24 O -0.549 6.549 25 O -0.513 6.513 26 C -0.136 4.136 27 H 0.263 0.737 28 H -0.015 1.015 29 H -0.009 1.009 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.345 0.655 35 H 0.356 0.644 36 H 0.414 0.586 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.426 0.574 40 H 0.083 0.917 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -22.276 6.895 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.014 4.014 10 C -0.133 4.133 11 C -0.174 4.174 12 C -0.033 4.033 13 H 0.139 0.861 14 N -0.364 5.364 15 C 0.313 3.687 16 O -0.447 6.447 17 N -0.362 5.362 18 C 0.017 3.983 19 H 0.135 0.865 20 C -0.155 4.155 21 C -0.121 4.121 22 H 0.173 0.827 23 C 0.337 3.663 24 O -0.440 6.440 25 O -0.326 6.326 26 C -0.175 4.175 27 H 0.071 0.929 28 H 0.003 0.997 29 H 0.009 0.991 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.172 0.828 36 H 0.250 0.750 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.288 0.712 40 H 0.102 0.898 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.275 -23.263 6.380 24.124 hybrid contribution -1.019 2.370 0.694 2.671 sum -1.295 -20.894 7.074 22.097 Atomic orbital electron populations 1.70105 1.07862 1.27649 1.51932 1.25994 0.95736 1.03451 0.94853 0.85416 0.79233 0.78853 0.77657 1.18329 1.20622 1.20489 1.21765 0.93679 0.92334 1.50095 0.91860 1.19009 0.94502 0.93339 0.94556 1.21434 0.97931 0.92625 1.01286 1.22222 0.98362 0.94525 1.02298 1.21412 0.95147 0.90300 0.96460 0.86082 1.58721 1.28107 1.46271 1.03297 1.20773 0.77890 0.86952 0.83095 1.90639 1.58079 1.57685 1.38279 1.45896 1.57265 1.23502 1.09578 1.22466 0.90802 0.86253 0.98815 0.86538 1.23312 0.93770 1.02454 0.95998 1.22358 0.94523 1.03462 0.91747 0.82706 1.23501 0.81005 0.71918 0.89840 1.90725 1.73428 1.43942 1.35884 1.84519 1.22477 1.79765 1.45874 1.23438 0.97780 0.97310 0.98923 0.92866 0.99680 0.99059 0.91834 0.92579 0.93322 0.91138 0.84154 0.82844 0.74953 0.87764 0.88624 0.71206 0.89833 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.44 0.28 -56.42 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.52 4.92 30.59 0.15 -3.37 16 11 C -0.13 -4.09 4.84 30.59 0.15 -3.95 16 12 C 0.08 2.07 3.21 44.17 0.14 2.22 16 13 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 14 N -0.83 -21.88 8.94 -171.79 -1.54 -23.41 16 15 C 0.53 13.71 7.08 87.66 0.62 14.33 16 16 O -0.57 -18.70 15.87 -3.02 -0.05 -18.75 16 17 N -0.71 -13.60 5.36 -440.04 -2.36 -15.96 16 18 C 0.12 1.96 4.22 45.52 0.19 2.15 16 19 H 0.12 2.06 7.50 -2.39 -0.02 2.04 16 20 C -0.12 -1.45 7.15 31.12 0.22 -1.23 16 21 C -0.10 -1.21 4.26 -11.02 -0.05 -1.25 16 22 H 0.16 1.06 8.14 -2.38 -0.02 1.05 16 23 C 0.49 7.82 7.86 71.24 0.56 8.38 16 24 O -0.55 -12.42 16.66 21.97 0.37 -12.05 16 25 O -0.51 -6.08 13.42 -51.44 -0.69 -6.77 16 26 C -0.14 -2.04 7.43 31.12 0.23 -1.81 16 27 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 28 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 1.99 6.87 -2.38 -0.02 1.97 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.35 9.66 8.58 -89.69 -0.77 8.89 16 35 H 0.36 8.68 7.55 -89.69 -0.68 8.00 16 36 H 0.41 6.32 8.71 -92.71 -0.81 5.51 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 1.39 7.41 -2.38 -0.02 1.38 16 39 H 0.43 1.82 9.10 -74.06 -0.67 1.15 16 40 H 0.08 1.44 8.10 -2.39 -0.02 1.42 16 41 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -75.31 348.04 -0.74 -76.05 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -1.85 Total: 24.30 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 3.06 Total: -12.75 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -3.61 Total: -95.80 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.37 Total: -37.57 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -75.31 -0.74 -76.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693356395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.980 kcal (2) G-P(sol) polarization free energy of solvation -75.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds