Wall clock time and date at job start Tue Mar 31 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.57689 * 2 1 4 4 C 1.53123 * 109.52097 * 120.15995 * 2 1 3 5 5 C 1.53036 * 109.27788 * 62.24964 * 4 2 1 6 6 N 1.46846 * 109.52384 * 59.18000 * 5 4 2 7 7 C 1.46903 * 110.99717 * 174.15896 * 6 5 4 8 8 C 1.50695 * 109.47089 * 66.04674 * 7 6 5 9 9 O 1.21283 * 120.00137 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00085 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00200 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47141 * 179.97438 * 11 10 8 13 13 H 1.07993 * 119.99942 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99807 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99861 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99963 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47610 * 89.99761 * 16 14 12 18 18 H 1.48505 * 109.47025 * 209.99481 * 16 14 12 19 19 H 1.48498 * 109.47428 * 329.99485 * 16 14 12 20 20 C 1.46842 * 111.19700 * 298.25435 * 6 5 4 21 21 C 1.53041 * 109.52407 * 61.74724 * 20 6 5 22 22 H 1.08997 * 109.50282 * 60.75542 * 21 20 6 23 23 C 1.50700 * 109.50324 * 180.87755 * 21 20 6 24 24 O 1.20830 * 119.99694 * 119.99935 * 23 21 20 25 25 O 1.34221 * 120.00295 * 299.99528 * 23 21 20 26 26 H 1.08998 * 109.47155 * 299.84418 * 1 2 3 27 27 H 1.09000 * 109.46968 * 59.83908 * 1 2 3 28 28 H 1.08995 * 109.47441 * 179.83855 * 1 2 3 29 29 H 1.09000 * 109.50367 * 302.30509 * 4 2 1 30 30 H 1.09006 * 109.50264 * 182.18848 * 4 2 1 31 31 H 1.08999 * 109.46075 * 179.19317 * 5 4 2 32 32 H 1.08998 * 109.46309 * 299.16289 * 5 4 2 33 33 H 1.09007 * 109.46443 * 186.04380 * 7 6 5 34 34 H 1.08994 * 109.47048 * 306.04358 * 7 6 5 35 35 H 0.97003 * 119.99880 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47366 * 299.99484 * 11 10 8 37 37 H 1.09003 * 109.47634 * 59.99892 * 11 10 8 38 38 H 0.96996 * 120.00032 * 180.02562 * 15 14 12 39 39 H 1.09006 * 109.46447 * 181.75636 * 20 6 5 40 40 H 1.08994 * 109.46873 * 301.72670 * 20 6 5 41 41 H 0.96698 * 117.00278 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7251 1.2478 5 6 1.5765 -2.1826 1.2116 6 7 2.0924 -2.8324 0.0000 7 6 1.7822 -4.2683 0.0000 8 6 0.2907 -4.4600 -0.0976 9 8 -0.4419 -3.4955 -0.1606 10 7 -0.2293 -5.7033 -0.1150 11 6 -1.6792 -5.8897 -0.2106 12 6 -1.9973 -7.3628 -0.2117 13 1 -1.1992 -8.0876 -0.1480 14 6 -3.3072 -7.7851 -0.2939 15 7 -3.5848 -9.0707 -0.2954 16 14 -4.6875 -6.5314 -0.4047 17 1 -4.9593 -6.2189 -1.8308 18 1 -5.9133 -7.0880 0.2223 19 1 -4.2876 -5.2906 0.3064 20 6 1.5765 -2.1826 -1.2116 21 6 2.0417 -0.7251 -1.2478 22 1 3.1309 -0.6911 -1.2674 23 6 1.4942 -0.0527 -2.4804 24 8 0.7720 0.9100 -2.3731 25 8 1.8089 -0.5233 -3.6974 26 1 -0.3633 0.5114 0.8914 27 1 -0.3633 0.5163 -0.8885 28 1 -0.3634 -1.0276 -0.0029 29 1 1.6457 -0.2387 2.1394 30 1 3.1310 -0.6911 1.2675 31 1 1.9512 -2.7054 2.0916 32 1 0.4871 -2.2161 1.2059 33 1 2.2664 -4.7445 -0.8526 34 1 2.1467 -4.7187 0.9232 35 1 0.3567 -6.4748 -0.0651 36 1 -2.1637 -5.4137 0.6420 37 1 -2.0435 -5.4391 -1.1338 38 1 -4.5063 -9.3678 -0.3536 39 1 1.9513 -2.7053 -2.0917 40 1 0.4871 -2.2161 -1.2060 41 1 1.4341 -0.0587 -4.4582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693503291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:36 Heat of formation + Delta-G solvation = -124.968059 kcal Electronic energy + Delta-G solvation = -23539.625214 eV Core-core repulsion = 20033.394410 eV Total energy + Delta-G solvation = -3506.230804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03730 -39.76352 -37.99872 -36.28830 -34.56339 -33.94446 -32.43100 -31.40783 -29.16820 -27.82491 -26.16435 -24.41385 -23.11248 -22.05662 -21.38009 -20.01770 -18.72052 -18.13545 -17.31435 -16.86010 -16.23018 -16.16017 -15.57121 -15.21549 -15.03952 -14.71773 -14.28293 -14.22179 -13.87115 -13.48603 -13.32199 -12.72362 -12.61200 -12.40612 -12.23292 -11.94674 -11.77701 -11.55435 -11.28593 -11.22187 -11.06576 -10.89459 -10.73009 -10.63062 -10.41207 -10.07857 -10.03108 -9.88299 -9.54402 -8.82915 -8.23249 -7.95770 -6.26430 -4.29081 2.08026 2.91879 3.05771 3.22321 3.29337 3.36831 3.87929 3.94725 4.28463 4.47129 4.72501 4.84526 5.05102 5.08986 5.23931 5.29602 5.31908 5.33790 5.48096 5.50365 5.54975 5.74713 5.75052 5.85725 5.93937 6.06060 6.15643 6.18881 6.27918 6.44835 6.70705 6.71590 6.91846 6.99127 7.00990 7.15219 7.33183 7.79931 8.05220 8.43331 8.68295 8.82654 9.33477 10.85514 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.004191 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.475263 B = 6679.251675 C = 7029.258399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 H 0.073 0.927 4 C -0.107 4.107 5 C 0.033 3.967 6 N -0.510 5.510 7 C 0.033 3.967 8 C 0.467 3.533 9 O -0.557 6.557 10 N -0.701 5.701 11 C 0.220 3.780 12 C -0.545 4.545 13 H 0.080 0.920 14 C 0.078 3.922 15 N -0.891 5.891 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.262 1.262 20 C 0.038 3.962 21 C -0.069 4.069 22 H 0.111 0.889 23 C 0.486 3.514 24 O -0.510 6.510 25 O -0.515 6.515 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.397 0.603 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.268 0.732 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.199 15.422 -0.896 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.092 4.092 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.094 4.094 6 N -0.233 5.233 7 C -0.099 4.099 8 C 0.251 3.749 9 O -0.438 6.438 10 N -0.349 5.349 11 C 0.097 3.903 12 C -0.583 4.583 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.528 5.528 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.089 4.089 21 C -0.089 4.089 22 H 0.129 0.871 23 C 0.328 3.672 24 O -0.398 6.398 25 O -0.327 6.327 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.231 0.769 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 13.986 16.054 -0.568 21.300 hybrid contribution -1.625 0.234 -0.610 1.751 sum 12.361 16.288 -1.178 20.481 Atomic orbital electron populations 1.22316 0.94185 1.03822 1.02877 1.20992 0.97266 0.98522 0.92372 0.90827 1.21588 1.00985 0.94820 0.97060 1.22377 1.00837 0.94297 0.91923 1.62363 1.57409 1.00946 1.02575 1.22294 0.91874 0.90660 1.05063 1.21888 0.91690 0.83947 0.77349 1.90528 1.62178 1.39404 1.51682 1.46347 1.10485 1.06936 1.71152 1.19485 0.76539 0.97699 0.96557 1.21092 0.94376 0.89645 1.53194 0.90227 1.24796 0.98603 0.95296 0.93856 1.69876 1.19983 1.13804 1.49177 0.86823 0.81681 0.82075 0.79113 1.19880 1.20846 1.18622 1.22401 1.02422 0.91013 0.93087 1.21083 1.02295 0.96349 0.89165 0.87133 1.23518 0.77336 0.81658 0.84680 1.90642 1.34791 1.27357 1.86970 1.84562 1.70989 1.60190 1.16958 0.93111 0.90487 0.90692 0.91026 0.91310 0.91097 0.91072 0.87773 0.87755 0.76898 0.95780 0.96274 0.92213 0.90335 0.89085 0.73410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 8.26 37.16 0.31 -2.11 16 2 C -0.07 -0.84 2.42 -90.49 -0.22 -1.06 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.11 -1.11 5.60 -26.65 -0.15 -1.26 16 5 C 0.03 0.41 4.85 -3.83 -0.02 0.39 16 6 N -0.51 -6.28 4.86 -236.12 -1.15 -7.43 16 7 C 0.03 0.40 5.86 -4.98 -0.03 0.37 16 8 C 0.47 7.98 7.24 -10.99 -0.08 7.90 16 9 O -0.56 -11.15 10.90 5.56 0.06 -11.09 16 10 N -0.70 -13.26 5.55 -61.47 -0.34 -13.60 16 11 C 0.22 5.23 4.50 -5.19 -0.02 5.21 16 12 C -0.55 -14.66 9.83 -34.44 -0.34 -15.00 16 13 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 16 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 20 C 0.04 0.50 3.94 -3.83 -0.02 0.49 16 21 C -0.07 -0.79 2.58 -91.69 -0.24 -1.03 16 22 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 23 C 0.49 5.88 7.33 36.01 0.26 6.15 16 24 O -0.51 -7.36 14.29 -18.75 -0.27 -7.63 16 25 O -0.52 -5.04 13.34 -39.23 -0.52 -5.56 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.17 5.35 -51.93 -0.28 0.89 16 28 H 0.07 1.21 4.20 -51.93 -0.22 0.99 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 32 H 0.07 1.10 4.45 -51.93 -0.23 0.86 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.08 8.06 -51.93 -0.42 0.66 16 35 H 0.40 6.57 8.32 -40.82 -0.34 6.23 16 36 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 37 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 39 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 40 H 0.09 1.49 3.85 -51.93 -0.20 1.29 16 41 H 0.41 2.28 9.10 45.56 0.41 2.70 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -32.53 318.27 -6.95 -39.48 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.99 Total: 7.71 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.64 Total: 2.13 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.71 Total: -46.45 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.73 Total: -24.28 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.53 -6.95 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693503291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.491 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds