Wall clock time and date at job start Tue Mar 31 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.57689 * 2 1 4 4 C 1.53123 * 109.52097 * 120.15995 * 2 1 3 5 5 C 1.53036 * 109.27788 * 62.24964 * 4 2 1 6 6 N 1.46846 * 109.52384 * 59.18000 * 5 4 2 7 7 C 1.46903 * 110.99717 * 174.15896 * 6 5 4 8 8 C 1.50695 * 109.47089 * 66.04674 * 7 6 5 9 9 O 1.21283 * 120.00137 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00085 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00200 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47141 * 179.97438 * 11 10 8 13 13 H 1.07993 * 119.99942 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99807 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99861 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99963 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47610 * 89.99761 * 16 14 12 18 18 H 1.48505 * 109.47025 * 209.99481 * 16 14 12 19 19 H 1.48498 * 109.47428 * 329.99485 * 16 14 12 20 20 C 1.46842 * 111.19700 * 298.25435 * 6 5 4 21 21 C 1.53041 * 109.52407 * 61.74724 * 20 6 5 22 22 H 1.08997 * 109.50282 * 60.75542 * 21 20 6 23 23 C 1.50700 * 109.50324 * 180.87755 * 21 20 6 24 24 O 1.20830 * 119.99694 * 119.99935 * 23 21 20 25 25 O 1.34221 * 120.00295 * 299.99528 * 23 21 20 26 26 H 1.08998 * 109.47155 * 299.84418 * 1 2 3 27 27 H 1.09000 * 109.46968 * 59.83908 * 1 2 3 28 28 H 1.08995 * 109.47441 * 179.83855 * 1 2 3 29 29 H 1.09000 * 109.50367 * 302.30509 * 4 2 1 30 30 H 1.09006 * 109.50264 * 182.18848 * 4 2 1 31 31 H 1.08999 * 109.46075 * 179.19317 * 5 4 2 32 32 H 1.08998 * 109.46309 * 299.16289 * 5 4 2 33 33 H 1.09007 * 109.46443 * 186.04380 * 7 6 5 34 34 H 1.08994 * 109.47048 * 306.04358 * 7 6 5 35 35 H 0.97003 * 119.99880 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47366 * 299.99484 * 11 10 8 37 37 H 1.09003 * 109.47634 * 59.99892 * 11 10 8 38 38 H 0.96996 * 120.00032 * 180.02562 * 15 14 12 39 39 H 1.09006 * 109.46447 * 181.75636 * 20 6 5 40 40 H 1.08994 * 109.46873 * 301.72670 * 20 6 5 41 41 H 0.96698 * 117.00278 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7251 1.2478 5 6 1.5765 -2.1826 1.2116 6 7 2.0924 -2.8324 0.0000 7 6 1.7822 -4.2683 0.0000 8 6 0.2907 -4.4600 -0.0976 9 8 -0.4419 -3.4955 -0.1606 10 7 -0.2293 -5.7033 -0.1150 11 6 -1.6792 -5.8897 -0.2106 12 6 -1.9973 -7.3628 -0.2117 13 1 -1.1992 -8.0876 -0.1480 14 6 -3.3072 -7.7851 -0.2939 15 7 -3.5848 -9.0707 -0.2954 16 14 -4.6875 -6.5314 -0.4047 17 1 -4.9593 -6.2189 -1.8308 18 1 -5.9133 -7.0880 0.2223 19 1 -4.2876 -5.2906 0.3064 20 6 1.5765 -2.1826 -1.2116 21 6 2.0417 -0.7251 -1.2478 22 1 3.1309 -0.6911 -1.2674 23 6 1.4942 -0.0527 -2.4804 24 8 0.7720 0.9100 -2.3731 25 8 1.8089 -0.5233 -3.6974 26 1 -0.3633 0.5114 0.8914 27 1 -0.3633 0.5163 -0.8885 28 1 -0.3634 -1.0276 -0.0029 29 1 1.6457 -0.2387 2.1394 30 1 3.1310 -0.6911 1.2675 31 1 1.9512 -2.7054 2.0916 32 1 0.4871 -2.2161 1.2059 33 1 2.2664 -4.7445 -0.8526 34 1 2.1467 -4.7187 0.9232 35 1 0.3567 -6.4748 -0.0651 36 1 -2.1637 -5.4137 0.6420 37 1 -2.0435 -5.4391 -1.1338 38 1 -4.5063 -9.3678 -0.3536 39 1 1.9513 -2.7053 -2.0917 40 1 0.4871 -2.2161 -1.2060 41 1 1.4341 -0.0587 -4.4582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693503291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:36 Heat of formation + Delta-G solvation = -151.237767 kcal Electronic energy + Delta-G solvation = -23540.764354 eV Core-core repulsion = 20033.394410 eV Total energy + Delta-G solvation = -3507.369944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02478 -40.94251 -39.13538 -37.20470 -36.19156 -35.06830 -34.42328 -32.32889 -30.68202 -29.18592 -27.37896 -25.37195 -24.47619 -23.46699 -22.46620 -21.46407 -19.77032 -19.08697 -18.99206 -17.83828 -17.72376 -17.16164 -16.96371 -16.58304 -16.30839 -15.88532 -15.67667 -15.40408 -15.03774 -14.87025 -14.48643 -14.28607 -14.24968 -13.60644 -13.42430 -13.06435 -12.96112 -12.77791 -12.69936 -12.56784 -12.24923 -12.22173 -11.98045 -11.74798 -11.67872 -11.60711 -11.38684 -11.19706 -11.02066 -10.94062 -9.87787 -9.11284 -8.42478 -6.48914 1.15245 1.28159 1.31309 1.42623 1.71458 2.11231 2.24261 2.52629 2.92083 2.93079 3.55949 3.78229 3.93852 4.03635 4.14554 4.34014 4.40326 4.44826 4.52906 4.60216 4.62687 4.74434 4.77040 4.80313 4.93724 4.98371 5.01425 5.10022 5.18269 5.19168 5.25669 5.34290 5.49345 5.58437 5.72171 5.89656 6.00188 6.08451 6.53180 6.85971 6.99017 7.14273 7.43785 8.72280 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.004191 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.475263 B = 6679.251675 C = 7029.258399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.071 4.071 3 H 0.084 0.916 4 C -0.099 4.099 5 C 0.031 3.969 6 N -0.497 5.497 7 C 0.041 3.959 8 C 0.464 3.536 9 O -0.585 6.585 10 N -0.704 5.704 11 C 0.234 3.766 12 C -0.545 4.545 13 H 0.061 0.939 14 C 0.028 3.972 15 N -0.930 5.930 16 Si 0.935 3.065 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.263 1.263 20 C 0.042 3.958 21 C -0.066 4.066 22 H 0.136 0.864 23 C 0.487 3.513 24 O -0.539 6.539 25 O -0.512 6.512 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.409 0.591 36 H 0.008 0.992 37 H 0.006 0.994 38 H 0.272 0.728 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.208 16.537 -0.740 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.090 4.090 3 H 0.102 0.898 4 C -0.137 4.137 5 C -0.097 4.097 6 N -0.218 5.218 7 C -0.090 4.090 8 C 0.251 3.749 9 O -0.467 6.467 10 N -0.355 5.355 11 C 0.109 3.891 12 C -0.583 4.583 13 H 0.079 0.921 14 C -0.172 4.172 15 N -0.569 5.569 16 Si 0.759 3.241 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.188 1.188 20 C -0.087 4.087 21 C -0.086 4.086 22 H 0.154 0.846 23 C 0.330 3.670 24 O -0.429 6.429 25 O -0.325 6.325 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.245 0.755 36 H 0.026 0.974 37 H 0.024 0.976 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 16.035 17.173 -0.431 23.499 hybrid contribution -2.206 -0.115 -0.697 2.317 sum 13.829 17.058 -1.128 21.988 Atomic orbital electron populations 1.22214 0.96322 1.01802 1.02215 1.21002 0.95338 0.99424 0.93237 0.89785 1.21571 1.02202 0.93219 0.96709 1.22416 0.98881 0.95959 0.92443 1.62467 1.56268 1.00813 1.02298 1.22494 0.87746 0.91158 1.07615 1.22907 0.93822 0.82503 0.75664 1.90559 1.63600 1.40186 1.52347 1.46212 1.08495 1.08492 1.72266 1.19009 0.79740 0.95213 0.95101 1.21326 0.93991 0.90919 1.52106 0.92071 1.25564 1.01063 0.96848 0.93750 1.69975 1.20788 1.15488 1.50668 0.85900 0.79176 0.79688 0.79326 1.19228 1.19808 1.18798 1.22289 1.00307 0.92354 0.93700 1.21104 1.03617 0.94989 0.88848 0.84588 1.23672 0.76687 0.81143 0.85467 1.90639 1.36064 1.28776 1.87463 1.84517 1.70753 1.60161 1.17066 0.92668 0.92207 0.93291 0.90118 0.89104 0.89572 0.94459 0.85190 0.84968 0.75520 0.97388 0.97609 0.91864 0.89717 0.92579 0.71345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 8.26 71.98 0.59 -4.09 16 2 C -0.07 -1.53 2.42 -10.71 -0.03 -1.55 16 3 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.10 -1.80 5.60 30.65 0.17 -1.63 16 5 C 0.03 0.69 4.85 86.33 0.42 1.11 16 6 N -0.50 -10.87 4.86 -900.95 -4.38 -15.25 16 7 C 0.04 0.89 5.86 85.55 0.50 1.39 16 8 C 0.46 15.43 7.24 87.66 0.64 16.07 16 9 O -0.58 -23.60 10.90 -3.04 -0.03 -23.64 16 10 N -0.70 -26.29 5.55 -466.78 -2.59 -28.88 16 11 C 0.23 11.21 4.50 85.64 0.39 11.60 16 12 C -0.55 -29.69 9.83 25.60 0.25 -29.44 16 13 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 14 C 0.03 1.58 5.47 84.66 0.46 2.05 16 15 N -0.93 -55.27 13.96 21.45 0.30 -54.97 16 16 Si 0.93 44.24 27.47 68.60 1.88 46.13 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 20 C 0.04 1.02 3.94 86.33 0.34 1.36 16 21 C -0.07 -1.38 2.58 -11.48 -0.03 -1.41 16 22 H 0.14 2.16 8.14 -2.39 -0.02 2.15 16 23 C 0.49 11.16 7.33 71.24 0.52 11.69 16 24 O -0.54 -15.34 14.29 21.95 0.31 -15.03 16 25 O -0.51 -9.10 13.34 -51.33 -0.68 -9.78 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.86 5.35 -2.39 -0.01 1.85 16 28 H 0.05 1.63 4.20 -2.39 -0.01 1.62 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.09 1.68 8.06 -2.39 -0.02 1.66 16 32 H 0.04 1.13 4.45 -2.39 -0.01 1.12 16 33 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.13 2.22 8.06 -2.39 -0.02 2.20 16 35 H 0.41 13.15 8.32 -92.71 -0.77 12.38 16 36 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 37 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 38 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.08 1.94 8.11 -2.38 -0.02 1.92 16 40 H 0.06 1.84 3.85 -2.39 -0.01 1.83 16 41 H 0.43 4.08 9.10 -74.06 -0.67 3.40 16 Total: -1.00 -71.56 318.27 -1.39 -72.95 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.43 Total: 21.33 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.23 Total: 7.14 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -6.67 Total: -99.10 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.40 Total: -48.45 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -71.56 -1.39 -72.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693503291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.287 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds