Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46977 * 2 1 4 4 C 1.34636 * 116.99855 * 180.02562 * 3 2 1 5 5 O 1.21509 * 120.00384 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00274 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63395 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.29715 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 C 1.50701 * 109.42092 * 178.67337 * 9 8 7 11 11 O 1.21279 * 120.00207 * 120.12766 * 10 9 8 12 12 N 1.34783 * 119.99786 * 300.13361 * 10 9 8 13 13 C 1.46500 * 119.99694 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47067 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99875 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00078 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99763 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99962 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47476 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47298 * 119.99540 * 18 16 14 21 21 H 1.48503 * 109.47224 * 240.00007 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 23 23 C 1.46933 * 120.62602 * 359.97266 * 6 4 3 24 24 H 1.08998 * 109.47174 * 299.99222 * 1 2 3 25 25 H 1.08998 * 109.47564 * 59.99961 * 1 2 3 26 26 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46530 * 240.00451 * 2 1 3 28 28 H 1.08996 * 109.47037 * 120.00579 * 2 1 3 29 29 H 1.09002 * 109.58751 * 246.15665 * 7 6 4 30 30 H 1.08996 * 109.58750 * 6.43850 * 7 6 4 31 31 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 32 32 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 33 33 H 1.09001 * 109.42242 * 58.75065 * 9 8 7 34 34 H 0.96996 * 119.99873 * 359.97438 * 12 10 9 35 35 H 1.09006 * 109.47158 * 299.99838 * 13 12 10 36 36 H 1.08997 * 109.47451 * 59.99690 * 13 12 10 37 37 H 0.97003 * 119.99690 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.50232 * 301.42239 * 22 9 8 39 39 H 1.09007 * 109.52628 * 181.33900 * 22 9 8 40 40 H 1.08994 * 109.58580 * 353.42544 * 23 6 4 41 41 H 1.09006 * 109.57831 * 113.70037 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0015 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9993 -0.0001 8 6 5.6874 3.9196 -1.1679 9 6 4.8644 5.2098 -1.0712 10 6 5.2464 6.1335 -2.1990 11 8 4.4092 6.4902 -3.0007 12 7 6.5185 6.5632 -2.3166 13 6 6.8899 7.4607 -3.4133 14 6 8.3575 7.7895 -3.3183 15 1 8.9538 7.3720 -2.5204 16 6 8.9387 8.6241 -4.2492 17 7 8.2125 9.1329 -5.2204 18 14 10.7577 9.0322 -4.1309 19 1 11.3453 8.3388 -2.9565 20 1 11.4472 8.5834 -5.3672 21 1 10.9268 10.4993 -3.9745 22 6 3.3739 4.8767 -1.1676 23 6 2.9817 3.9658 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.6211 3.4617 0.9394 30 1 5.8248 2.0412 -0.1156 31 1 6.7501 4.1575 -1.1217 32 1 5.4671 3.4178 -2.1101 33 1 5.0664 5.6980 -0.1177 34 1 7.1879 6.2782 -1.6752 35 1 6.6875 6.9726 -4.3668 36 1 6.3070 8.3792 -3.3446 37 1 8.6213 9.7204 -5.8751 38 1 3.1753 4.3662 -2.1099 39 1 2.7912 5.7969 -1.1226 40 1 1.9466 3.6455 -0.1172 41 1 3.0926 4.5054 0.9411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726263448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = -134.707901 kcal Electronic energy + Delta-G solvation = -22468.701957 eV Core-core repulsion = 18962.048801 eV Total energy + Delta-G solvation = -3506.653156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83932 -39.42824 -37.73180 -36.36900 -34.24461 -33.25615 -32.28484 -31.78403 -31.11171 -27.66159 -25.94210 -23.84313 -23.28759 -22.64610 -21.62245 -20.26063 -19.46893 -18.29160 -17.34887 -16.93171 -16.84577 -15.71797 -15.22035 -15.10595 -14.90123 -14.74366 -14.36764 -13.94541 -13.86926 -13.43555 -13.23521 -13.08552 -12.92176 -12.43136 -12.20124 -12.05613 -11.88278 -11.76518 -11.67344 -11.38701 -11.00210 -10.93463 -10.83962 -10.74911 -10.66357 -10.51750 -10.32657 -9.39808 -9.14148 -8.83979 -8.75768 -7.90408 -6.18598 -4.25532 1.93890 2.66175 3.22182 3.29425 3.31970 3.32338 3.63569 4.02727 4.34403 4.60180 4.65282 4.70753 4.73176 4.89515 4.99363 5.00056 5.13195 5.17637 5.18732 5.34092 5.37867 5.47067 5.56971 5.59442 5.63561 5.67103 5.82279 5.91173 6.08074 6.19461 6.29140 6.33139 7.14905 7.28794 7.41373 7.49622 7.64446 7.95175 8.11119 8.60410 8.75971 9.07733 9.41330 10.91642 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038155 B = 0.002900 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.667659 B = 9653.131670 C =10049.403460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.651 3.349 5 O -0.577 6.577 6 N -0.593 5.593 7 C 0.129 3.871 8 C -0.127 4.127 9 C -0.109 4.109 10 C 0.502 3.498 11 O -0.556 6.556 12 N -0.711 5.711 13 C 0.249 3.751 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.113 4.113 23 C 0.112 3.888 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.390 0.610 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.265 0.735 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.779 -14.840 13.774 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.406 3.594 5 O -0.467 6.467 6 N -0.333 5.333 7 C 0.008 3.992 8 C -0.165 4.165 9 C -0.131 4.131 10 C 0.286 3.714 11 O -0.435 6.435 12 N -0.359 5.359 13 C 0.128 3.872 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.152 4.152 23 C -0.010 4.010 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.223 0.777 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.181 -14.792 13.011 23.162 hybrid contribution 1.386 0.179 0.203 1.412 sum -10.795 -14.614 13.214 22.465 Atomic orbital electron populations 1.21828 0.92565 1.03023 1.03598 1.22939 0.94796 0.78847 1.02723 1.86231 1.22147 1.33011 1.87008 1.17979 0.81137 0.84044 0.76266 1.90978 1.59818 1.39443 1.56430 1.46985 1.07602 1.03090 1.75631 1.21685 0.77480 1.01394 0.98668 1.22013 1.00490 0.94683 0.99345 1.21401 0.96738 0.95767 0.99205 1.20368 0.83241 0.81601 0.86175 1.90657 1.49922 1.58887 1.44015 1.46477 1.08830 1.48885 1.31719 1.19107 0.95229 0.88402 0.84461 1.21259 0.93704 1.30188 1.12931 0.91853 1.24961 0.98719 0.95477 0.94924 1.69986 1.36048 1.31718 1.14521 0.86362 0.84228 0.78218 0.78106 1.19623 1.20792 1.20803 1.21723 0.94707 1.00139 0.98607 1.21846 0.94358 0.85762 0.99077 0.91491 0.91367 0.90057 0.91191 0.91276 0.90615 0.88339 0.89342 0.90678 0.88680 0.77732 0.95586 0.95576 0.92496 0.90650 0.89544 0.88835 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.51 16 2 C 0.08 0.71 6.19 37.16 0.23 0.94 16 3 O -0.37 -4.19 8.86 -40.31 -0.36 -4.55 16 4 C 0.65 8.58 8.43 54.06 0.46 9.04 16 5 O -0.58 -9.08 15.54 -19.28 -0.30 -9.38 16 6 N -0.59 -6.81 2.97 -178.53 -0.53 -7.34 16 7 C 0.13 1.35 6.42 -3.71 -0.02 1.33 16 8 C -0.13 -1.48 5.29 -26.45 -0.14 -1.62 16 9 C -0.11 -1.43 2.49 -91.57 -0.23 -1.66 16 10 C 0.50 9.55 7.16 -10.98 -0.08 9.47 16 11 O -0.56 -12.99 15.98 5.56 0.09 -12.90 16 12 N -0.71 -14.45 5.43 -61.47 -0.33 -14.78 16 13 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 14 C -0.54 -14.54 9.28 -34.44 -0.32 -14.85 16 15 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 18 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 C -0.11 -1.39 4.66 -26.59 -0.12 -1.51 16 23 C 0.11 1.10 6.45 -3.69 -0.02 1.08 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.11 7.00 -51.93 -0.36 0.75 16 31 H 0.09 0.94 7.54 -51.93 -0.39 0.55 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.39 6.71 7.72 -40.82 -0.32 6.40 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 39 H 0.09 1.07 8.07 -51.92 -0.42 0.66 16 40 H 0.09 0.87 6.93 -51.93 -0.36 0.51 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -34.09 341.32 -7.02 -41.11 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.45 Total: 2.43 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 0.01 Total: 9.80 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.13 Total: -47.35 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.57 Total: -26.82 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.09 -7.02 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726263448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.599 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds