Wall clock time and date at job start Tue Mar 31 2020 05:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47059 * 239.99734 * 3 2 1 5 5 H 1.48498 * 109.46747 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47164 * 119.99839 * 3 2 1 7 7 C 1.38953 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00175 * 199.09694 * 7 2 1 9 9 N 1.37092 * 120.00098 * 19.09529 * 7 2 1 10 10 C 1.34776 * 119.99912 * 42.78926 * 9 7 2 11 11 O 1.21294 * 119.99897 * 0.28246 * 10 9 7 12 12 C 1.50699 * 119.99992 * 180.27456 * 10 9 7 13 13 C 1.53005 * 109.47204 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47281 * 180.02562 * 13 12 10 15 15 N 1.46493 * 109.47005 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99728 * 179.97438 * 15 14 13 17 17 O 1.21506 * 120.00220 * 0.02562 * 16 15 14 18 18 O 1.34641 * 119.99689 * 180.02562 * 16 15 14 19 19 C 1.46497 * 119.99986 * 223.06710 * 9 7 2 20 20 C 1.54269 * 110.03443 * 59.59464 * 19 9 7 21 21 C 1.54959 * 104.16271 * 217.13320 * 20 19 9 22 22 C 1.54890 * 102.77553 * 37.88923 * 21 20 19 23 23 C 1.53874 * 110.03529 * 302.37385 * 19 9 7 24 24 H 0.97001 * 119.99613 * 354.74146 * 1 2 3 25 25 H 1.09003 * 109.47715 * 300.00308 * 12 10 9 26 26 H 1.09000 * 109.46993 * 60.00694 * 12 10 9 27 27 H 1.09000 * 109.47063 * 300.00159 * 13 12 10 28 28 H 1.08994 * 109.47230 * 59.99907 * 13 12 10 29 29 H 1.09000 * 109.47011 * 299.99958 * 14 13 12 30 30 H 1.09007 * 109.46684 * 59.99632 * 14 13 12 31 31 H 0.96998 * 120.00609 * 0.02562 * 15 14 13 32 32 H 0.96700 * 116.99615 * 180.02562 * 18 16 15 33 33 H 1.09006 * 110.01944 * 180.98355 * 19 9 7 34 34 H 1.08999 * 110.48342 * 335.78880 * 20 19 9 35 35 H 1.09006 * 110.48397 * 98.42653 * 20 19 9 36 36 H 1.08996 * 110.72047 * 279.57752 * 21 20 19 37 37 H 1.09002 * 110.92489 * 156.28921 * 21 20 19 38 38 H 1.09001 * 110.48895 * 203.40644 * 22 21 20 39 39 H 1.08999 * 110.60414 * 80.81750 * 22 21 20 40 40 H 1.08995 * 110.03602 * 238.57141 * 23 19 9 41 41 H 1.09003 * 110.03119 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0443 -1.2290 0.3066 9 7 1.3799 -2.3581 -0.3873 10 6 0.5740 -2.3564 -1.4676 11 8 0.4092 -1.3343 -2.0996 12 6 -0.1222 -3.6243 -1.8904 13 6 -0.9685 -3.3507 -3.1353 14 6 -1.6759 -4.6378 -3.5642 15 7 -2.4867 -4.3757 -4.7558 16 6 -3.2032 -5.3705 -5.3155 17 8 -3.1770 -6.4848 -4.8316 18 8 -3.9480 -5.1297 -6.4110 19 6 1.5790 -3.5926 0.3760 20 6 1.1194 -3.3918 1.8349 21 6 2.1446 -4.1997 2.6700 22 6 3.4754 -3.9429 1.9202 23 6 3.0763 -3.9433 0.4300 24 1 -0.4849 0.8366 0.0770 25 1 0.6210 -4.3886 -2.1175 26 1 -0.7658 -3.9721 -1.0824 27 1 -1.7118 -2.5863 -2.9086 28 1 -0.3247 -3.0031 -3.9431 29 1 -0.9329 -5.4025 -3.7908 30 1 -2.3198 -4.9850 -2.7560 31 1 -2.5073 -3.4863 -5.1424 32 1 -4.4449 -5.8745 -6.7764 33 1 1.0207 -4.4089 -0.0824 34 1 1.1552 -2.3363 2.1042 35 1 0.1140 -3.7886 1.9761 36 1 1.8964 -5.2610 2.6637 37 1 2.1979 -3.8229 3.6914 38 1 4.1886 -4.7415 2.1243 39 1 3.8946 -2.9771 2.2026 40 1 3.2445 -4.9300 -0.0013 41 1 3.6549 -3.1947 -0.1113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739075793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:54 Heat of formation + Delta-G solvation = -129.323056 kcal Electronic energy + Delta-G solvation = -22956.674189 eV Core-core repulsion = 19450.254538 eV Total energy + Delta-G solvation = -3506.419651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25080 -38.89041 -36.97005 -36.38858 -35.33730 -33.35719 -32.29343 -31.30163 -28.05092 -27.15241 -26.77009 -24.40343 -22.18686 -21.47173 -20.08233 -19.80643 -19.11853 -18.55802 -17.26090 -16.43985 -16.21964 -15.91175 -15.11629 -15.02545 -14.77432 -14.41509 -14.15002 -13.55157 -13.41788 -13.33439 -12.73521 -12.35576 -12.10900 -11.76133 -11.55757 -11.25674 -11.15979 -10.93260 -10.85179 -10.74551 -10.71962 -10.59462 -10.47492 -10.46229 -10.37453 -10.16709 -10.01699 -9.74244 -9.24252 -8.69019 -7.98907 -7.02089 -6.06839 -3.78443 2.39111 2.77620 3.32218 3.39162 3.42839 4.22470 4.41836 4.60935 4.83893 5.15486 5.23980 5.26243 5.27434 5.43228 5.49677 5.54225 5.81715 5.90500 5.92240 5.99903 6.09288 6.16602 6.17813 6.23306 6.26024 6.35903 6.45175 6.49956 6.54408 6.54951 6.63760 6.64991 6.83313 6.97997 7.22772 7.35802 7.68648 8.33318 8.34036 9.13223 9.24053 9.74813 10.37520 11.02696 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.004407 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.806320 B = 6351.322839 C = 7714.208793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.342 4.342 8 H 0.076 0.924 9 N -0.449 5.449 10 C 0.475 3.525 11 O -0.538 6.538 12 C -0.130 4.130 13 C -0.110 4.110 14 C 0.135 3.865 15 N -0.703 5.703 16 C 0.660 3.340 17 O -0.584 6.584 18 O -0.531 6.531 19 C 0.129 3.871 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.131 4.131 24 H 0.262 0.738 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.409 0.591 32 H 0.426 0.574 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 -9.632 -3.313 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.469 4.469 8 H 0.094 0.906 9 N -0.171 5.171 10 C 0.262 3.738 11 O -0.416 6.416 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.013 3.987 15 N -0.363 5.363 16 C 0.411 3.589 17 O -0.475 6.475 18 O -0.340 6.340 19 C 0.024 3.976 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.245 0.755 32 H 0.285 0.715 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.877 -9.190 -3.358 9.962 hybrid contribution -0.020 0.671 -0.233 0.711 sum -1.898 -8.519 -3.591 9.437 Atomic orbital electron populations 1.69815 1.06483 1.27245 1.43170 1.25173 0.94717 0.99146 0.94598 0.86353 0.79350 0.82384 0.78361 1.20118 1.21385 1.20539 1.18763 0.94891 0.84114 1.49173 0.90613 1.43380 1.44007 1.07339 1.22348 1.19773 0.83448 0.88797 0.81806 1.90516 1.62919 1.33841 1.54316 1.21495 0.99155 0.99058 0.97453 1.21467 0.99558 0.95367 0.98452 1.21549 0.93427 0.98942 0.84807 1.44744 1.48340 1.12037 1.31182 1.17833 0.78090 0.84053 0.78885 1.91044 1.68558 1.22587 1.65266 1.84194 1.60137 1.46768 1.42921 1.21700 0.94496 0.88842 0.92575 1.22661 0.96824 1.02212 0.94676 1.22450 0.95928 0.99208 0.98493 1.22259 0.96791 1.00864 0.95584 1.22457 0.97594 1.00479 0.96426 0.92778 0.90756 0.90551 0.90344 0.90706 0.91204 0.91138 0.75542 0.71453 0.91444 0.89145 0.93035 0.92528 0.92401 0.92961 0.91642 0.92938 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.96 11.67 55.50 0.65 -23.31 16 2 C 0.07 2.02 4.35 -17.47 -0.08 1.94 16 3 Si 0.91 21.63 29.60 -169.99 -5.03 16.59 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.34 -8.95 7.45 -14.93 -0.11 -9.07 16 8 H 0.08 1.94 7.08 -52.48 -0.37 1.57 16 9 N -0.45 -10.56 2.46 -106.54 -0.26 -10.82 16 10 C 0.47 11.33 6.96 -10.99 -0.08 11.25 16 11 O -0.54 -15.04 13.65 5.54 0.08 -14.97 16 12 C -0.13 -2.29 4.01 -27.88 -0.11 -2.40 16 13 C -0.11 -1.72 4.62 -26.73 -0.12 -1.84 16 14 C 0.13 1.78 5.67 -4.04 -0.02 1.76 16 15 N -0.70 -8.72 5.56 -65.28 -0.36 -9.09 16 16 C 0.66 8.68 9.12 54.06 0.49 9.17 16 17 O -0.58 -9.59 17.13 -19.28 -0.33 -9.92 16 18 O -0.53 -5.15 13.48 -40.33 -0.54 -5.69 16 19 C 0.13 2.43 3.20 -66.81 -0.21 2.21 16 20 C -0.13 -2.28 6.42 -25.03 -0.16 -2.44 16 21 C -0.12 -1.81 6.91 -24.70 -0.17 -1.98 16 22 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 23 C -0.13 -2.19 6.20 -25.61 -0.16 -2.35 16 24 H 0.26 7.32 8.32 -40.82 -0.34 6.98 16 25 H 0.07 1.14 7.77 -51.93 -0.40 0.73 16 26 H 0.08 1.27 7.82 -51.93 -0.41 0.86 16 27 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 28 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 31 H 0.41 4.44 8.58 -40.82 -0.35 4.09 16 32 H 0.43 2.13 9.11 45.56 0.42 2.55 16 33 H 0.07 1.13 5.83 -51.93 -0.30 0.83 16 34 H 0.09 1.98 7.10 -51.93 -0.37 1.61 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.41 6.85 -51.93 -0.36 1.06 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -34.03 336.41 -7.14 -41.17 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.50 Total: 6.63 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.90 Total: 4.33 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.02 Total: -43.22 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.80 Total: -30.58 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.03 -7.14 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.153 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds