Wall clock time and date at job start Tue Mar 31 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47059 * 239.99734 * 3 2 1 5 5 H 1.48498 * 109.46747 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47164 * 119.99839 * 3 2 1 7 7 C 1.38953 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00175 * 199.09694 * 7 2 1 9 9 N 1.37092 * 120.00098 * 19.09529 * 7 2 1 10 10 C 1.34776 * 119.99912 * 42.78926 * 9 7 2 11 11 O 1.21294 * 119.99897 * 0.28246 * 10 9 7 12 12 C 1.50699 * 119.99992 * 180.27456 * 10 9 7 13 13 C 1.53005 * 109.47204 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47281 * 180.02562 * 13 12 10 15 15 N 1.46493 * 109.47005 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99728 * 179.97438 * 15 14 13 17 17 O 1.21506 * 120.00220 * 0.02562 * 16 15 14 18 18 O 1.34641 * 119.99689 * 180.02562 * 16 15 14 19 19 C 1.46497 * 119.99986 * 223.06710 * 9 7 2 20 20 C 1.54269 * 110.03443 * 59.59464 * 19 9 7 21 21 C 1.54959 * 104.16271 * 217.13320 * 20 19 9 22 22 C 1.54890 * 102.77553 * 37.88923 * 21 20 19 23 23 C 1.53874 * 110.03529 * 302.37385 * 19 9 7 24 24 H 0.97001 * 119.99613 * 354.74146 * 1 2 3 25 25 H 1.09003 * 109.47715 * 300.00308 * 12 10 9 26 26 H 1.09000 * 109.46993 * 60.00694 * 12 10 9 27 27 H 1.09000 * 109.47063 * 300.00159 * 13 12 10 28 28 H 1.08994 * 109.47230 * 59.99907 * 13 12 10 29 29 H 1.09000 * 109.47011 * 299.99958 * 14 13 12 30 30 H 1.09007 * 109.46684 * 59.99632 * 14 13 12 31 31 H 0.96998 * 120.00609 * 0.02562 * 15 14 13 32 32 H 0.96700 * 116.99615 * 180.02562 * 18 16 15 33 33 H 1.09006 * 110.01944 * 180.98355 * 19 9 7 34 34 H 1.08999 * 110.48342 * 335.78880 * 20 19 9 35 35 H 1.09006 * 110.48397 * 98.42653 * 20 19 9 36 36 H 1.08996 * 110.72047 * 279.57752 * 21 20 19 37 37 H 1.09002 * 110.92489 * 156.28921 * 21 20 19 38 38 H 1.09001 * 110.48895 * 203.40644 * 22 21 20 39 39 H 1.08999 * 110.60414 * 80.81750 * 22 21 20 40 40 H 1.08995 * 110.03602 * 238.57141 * 23 19 9 41 41 H 1.09003 * 110.03119 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0443 -1.2290 0.3066 9 7 1.3799 -2.3581 -0.3873 10 6 0.5740 -2.3564 -1.4676 11 8 0.4092 -1.3343 -2.0996 12 6 -0.1222 -3.6243 -1.8904 13 6 -0.9685 -3.3507 -3.1353 14 6 -1.6759 -4.6378 -3.5642 15 7 -2.4867 -4.3757 -4.7558 16 6 -3.2032 -5.3705 -5.3155 17 8 -3.1770 -6.4848 -4.8316 18 8 -3.9480 -5.1297 -6.4110 19 6 1.5790 -3.5926 0.3760 20 6 1.1194 -3.3918 1.8349 21 6 2.1446 -4.1997 2.6700 22 6 3.4754 -3.9429 1.9202 23 6 3.0763 -3.9433 0.4300 24 1 -0.4849 0.8366 0.0770 25 1 0.6210 -4.3886 -2.1175 26 1 -0.7658 -3.9721 -1.0824 27 1 -1.7118 -2.5863 -2.9086 28 1 -0.3247 -3.0031 -3.9431 29 1 -0.9329 -5.4025 -3.7908 30 1 -2.3198 -4.9850 -2.7560 31 1 -2.5073 -3.4863 -5.1424 32 1 -4.4449 -5.8745 -6.7764 33 1 1.0207 -4.4089 -0.0824 34 1 1.1552 -2.3363 2.1042 35 1 0.1140 -3.7886 1.9761 36 1 1.8964 -5.2610 2.6637 37 1 2.1979 -3.8229 3.6914 38 1 4.1886 -4.7415 2.1243 39 1 3.8946 -2.9771 2.2026 40 1 3.2445 -4.9300 -0.0013 41 1 3.6549 -3.1947 -0.1113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739075793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:53 Heat of formation + Delta-G solvation = -154.706958 kcal Electronic energy + Delta-G solvation = -22957.774918 eV Core-core repulsion = 19450.254538 eV Total energy + Delta-G solvation = -3507.520380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25264 -40.55809 -38.40759 -37.45645 -36.48087 -35.13831 -33.81778 -33.03010 -29.39181 -28.66888 -28.18975 -26.12164 -23.48183 -22.55284 -21.35896 -21.33479 -20.69578 -19.69122 -18.33575 -18.08370 -17.57439 -17.27361 -16.72052 -16.36577 -16.19616 -15.81811 -15.71666 -15.02683 -14.83157 -14.51381 -14.08965 -14.00717 -13.54219 -13.25650 -12.95057 -12.79044 -12.61280 -12.50748 -12.44278 -12.34423 -12.17316 -12.05046 -11.82136 -11.79828 -11.76858 -11.71979 -11.31601 -11.22638 -10.67618 -10.27947 -9.88943 -8.94080 -8.12596 -5.84619 1.37875 1.45959 1.47238 1.48821 1.76322 2.33406 2.58543 3.23085 3.31650 3.71469 3.88879 3.95029 4.00758 4.09720 4.18033 4.28309 4.56064 4.59791 4.64699 4.73598 4.75316 4.82829 4.88171 4.93220 4.99053 5.17543 5.19403 5.22011 5.23654 5.33896 5.37729 5.49507 5.61803 5.64054 5.73672 5.81979 6.31599 6.39919 7.15290 7.33662 7.42490 7.85363 8.50194 8.96876 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.004407 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.806320 B = 6351.322839 C = 7714.208793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.024 3.976 3 Si 0.959 3.041 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.343 4.343 8 H 0.074 0.926 9 N -0.462 5.462 10 C 0.457 3.543 11 O -0.590 6.590 12 C -0.120 4.120 13 C -0.096 4.096 14 C 0.147 3.853 15 N -0.701 5.701 16 C 0.664 3.336 17 O -0.619 6.619 18 O -0.520 6.520 19 C 0.120 3.880 20 C -0.126 4.126 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.127 4.127 24 H 0.255 0.745 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.417 0.583 32 H 0.446 0.554 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 -12.038 -3.211 12.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.181 4.181 3 Si 0.785 3.215 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.471 4.471 8 H 0.092 0.908 9 N -0.183 5.183 10 C 0.246 3.754 11 O -0.472 6.472 12 C -0.160 4.160 13 C -0.135 4.135 14 C 0.025 3.975 15 N -0.362 5.362 16 C 0.416 3.584 17 O -0.512 6.512 18 O -0.332 6.332 19 C 0.016 3.984 20 C -0.165 4.165 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.166 4.166 24 H 0.064 0.936 25 H 0.123 0.877 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.253 0.747 32 H 0.309 0.691 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.337 -11.617 -3.246 12.136 hybrid contribution -0.171 1.372 -0.310 1.417 sum -1.508 -10.245 -3.556 10.949 Atomic orbital electron populations 1.69925 1.07724 1.27127 1.45712 1.25877 0.95343 1.02021 0.94899 0.85546 0.78250 0.79179 0.78529 1.20939 1.21728 1.18568 1.18948 0.94948 0.85447 1.47775 0.90826 1.43657 1.43570 1.08159 1.22927 1.20862 0.83039 0.90266 0.81273 1.90477 1.64538 1.36281 1.55912 1.21421 0.99776 0.96334 0.98519 1.21262 0.98701 0.96046 0.97446 1.21325 0.93571 0.97370 0.85243 1.44671 1.48101 1.12437 1.30949 1.17836 0.77994 0.83400 0.79200 1.91025 1.69779 1.23904 1.66442 1.84178 1.59679 1.47881 1.41492 1.22040 0.96571 0.87403 0.92405 1.22591 0.98535 1.00121 0.95221 1.22415 0.94139 1.00226 0.98077 1.22253 0.97613 1.01101 0.94247 1.22427 0.95358 1.01185 0.97611 0.93590 0.87661 0.89200 0.92592 0.91458 0.90193 0.90981 0.74705 0.69087 0.88838 0.93687 0.92443 0.89557 0.91623 0.89759 0.93578 0.89766 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.97 11.67 21.66 0.25 -51.71 16 2 C 0.02 1.38 4.35 84.93 0.37 1.75 16 3 Si 0.96 45.66 29.60 68.60 2.03 47.69 16 4 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.34 -18.40 7.45 84.04 0.63 -17.77 16 8 H 0.07 3.87 7.08 -2.91 -0.02 3.85 16 9 N -0.46 -21.89 2.46 -609.37 -1.50 -23.39 16 10 C 0.46 21.99 6.96 87.66 0.61 22.60 16 11 O -0.59 -34.09 13.65 -3.07 -0.04 -34.13 16 12 C -0.12 -4.03 4.01 29.85 0.12 -3.91 16 13 C -0.10 -2.93 4.62 30.60 0.14 -2.79 16 14 C 0.15 3.62 5.67 86.38 0.49 4.11 16 15 N -0.70 -16.30 5.56 -590.85 -3.29 -19.58 16 16 C 0.66 16.23 9.12 129.79 1.18 17.42 16 17 O -0.62 -19.26 17.13 19.82 0.34 -18.92 16 18 O -0.52 -8.95 13.48 -55.50 -0.75 -9.69 16 19 C 0.12 4.32 3.20 45.72 0.15 4.46 16 20 C -0.13 -4.47 6.42 31.69 0.20 -4.26 16 21 C -0.11 -2.93 6.91 31.91 0.22 -2.71 16 22 C -0.11 -3.12 6.83 31.67 0.22 -2.90 16 23 C -0.13 -3.96 6.20 31.32 0.19 -3.77 16 24 H 0.25 14.91 8.32 -92.71 -0.77 14.14 16 25 H 0.11 2.89 7.77 -2.39 -0.02 2.88 16 26 H 0.09 2.80 7.82 -2.39 -0.02 2.79 16 27 H 0.06 1.96 8.10 -2.39 -0.02 1.94 16 28 H 0.07 2.15 8.10 -2.39 -0.02 2.13 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.42 8.53 8.58 -92.71 -0.80 7.73 16 32 H 0.45 3.40 9.11 -74.06 -0.67 2.73 16 33 H 0.09 2.85 5.83 -2.38 -0.01 2.84 16 34 H 0.04 2.00 7.10 -2.39 -0.02 1.99 16 35 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.73 6.85 -2.39 -0.02 1.71 16 Total: -1.00 -76.76 336.41 1.15 -75.61 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.42 Total: 21.91 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 4.52 Total: 12.22 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -4.53 Total: -94.69 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -0.45 Total: -62.75 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.76 1.15 -75.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.095 kcal (2) G-P(sol) polarization free energy of solvation -76.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds