Wall clock time and date at job start Tue Mar 31 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99562 * 2 1 4 4 O 1.20824 * 120.00356 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99801 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.46952 * 176.37688 * 5 3 2 7 7 H 1.08997 * 109.90975 * 54.68288 * 6 5 3 8 8 C 1.53994 * 109.91570 * 293.57987 * 6 5 3 9 9 C 1.54595 * 105.22792 * 239.17584 * 8 6 5 10 10 C 1.55105 * 102.84394 * 338.15408 * 9 8 6 11 11 N 1.47897 * 110.07992 * 175.89220 * 6 5 3 12 12 C 1.46901 * 111.00084 * 265.28763 * 11 6 5 13 13 C 1.50704 * 109.46984 * 183.11244 * 12 11 6 14 14 O 1.21277 * 120.00419 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99647 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99807 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46794 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99465 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00605 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47034 * 90.00337 * 21 19 17 23 23 H 1.48501 * 109.46999 * 210.00364 * 21 19 17 24 24 H 1.48496 * 109.47039 * 330.00253 * 21 19 17 25 25 H 1.08999 * 109.46707 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46849 * 299.99842 * 1 2 3 27 27 H 1.08998 * 109.47794 * 60.00271 * 1 2 3 28 28 H 1.08997 * 109.47066 * 56.37513 * 5 3 2 29 29 H 1.08996 * 109.46870 * 296.37715 * 5 3 2 30 30 H 1.08999 * 110.31290 * 358.14353 * 8 6 5 31 31 H 1.09001 * 110.31170 * 120.21294 * 8 6 5 32 32 H 1.08998 * 110.72559 * 96.44919 * 9 8 6 33 33 H 1.09004 * 110.72904 * 219.73974 * 9 8 6 34 34 H 1.09001 * 110.59610 * 278.87403 * 10 9 8 35 35 H 1.09003 * 110.83021 * 155.84675 * 10 9 8 36 36 H 1.08995 * 109.47075 * 303.10851 * 12 11 6 37 37 H 1.08993 * 109.47197 * 63.11275 * 12 11 6 38 38 H 0.96997 * 119.99896 * 359.97438 * 15 13 12 39 39 H 1.08995 * 109.46937 * 299.99705 * 16 15 13 40 40 H 1.09001 * 109.47046 * 59.99635 * 16 15 13 41 41 H 0.96993 * 119.99944 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7394 -0.0916 7 1 3.5348 3.3148 0.7086 8 6 3.5973 3.3218 -1.4591 9 6 4.9213 3.7844 -2.1093 10 6 5.8622 3.9595 -0.8887 11 7 5.4724 2.8398 0.0061 12 6 5.8917 3.1010 1.3895 13 6 7.3882 3.2726 1.4370 14 8 8.0412 3.1854 0.4188 15 7 8.0009 3.5220 2.6113 16 6 9.4557 3.6882 2.6576 17 6 9.8857 3.9563 4.0768 18 1 9.1491 3.9982 4.8655 19 6 11.2197 4.1470 4.3685 20 7 12.1168 4.0955 3.4082 21 14 11.7527 4.4801 6.1277 22 1 12.0437 3.1929 6.8088 23 1 12.9740 5.3250 6.1233 24 1 10.6643 5.1870 6.8492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.9586 0.7259 -0.8565 29 1 3.9533 0.8379 0.9198 30 1 3.1225 2.5554 -2.0717 31 1 2.9248 4.1692 -1.3262 32 1 5.3060 3.0215 -2.7861 33 1 4.7844 4.7313 -2.6316 34 1 5.6856 4.9193 -0.4031 35 1 6.9063 3.8675 -1.1878 36 1 5.4102 4.0102 1.7496 37 1 5.6020 2.2617 2.0216 38 1 7.4786 3.5914 3.4257 39 1 9.9369 2.7790 2.2973 40 1 9.7458 4.5277 2.0256 41 1 13.0552 4.2301 3.6135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749466837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:28 Heat of formation + Delta-G solvation = -120.886997 kcal Electronic energy + Delta-G solvation = -22375.005779 eV Core-core repulsion = 18868.951943 eV Total energy + Delta-G solvation = -3506.053836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85363 -39.55516 -38.03384 -36.65051 -34.18193 -32.46840 -32.21911 -31.90385 -28.32047 -27.90758 -26.23019 -25.64736 -22.53225 -21.68662 -21.19761 -19.93139 -19.66792 -17.81976 -17.27122 -16.85568 -16.61686 -15.94066 -15.79176 -15.12605 -14.95818 -14.85968 -14.25556 -13.98617 -13.89498 -13.21847 -13.18234 -12.92930 -12.57042 -12.35684 -12.28846 -12.07310 -11.92630 -11.78560 -11.23521 -11.13537 -11.02587 -10.97732 -10.92140 -10.76998 -10.70752 -10.57784 -10.30280 -9.40023 -8.99943 -8.73759 -8.37344 -7.86401 -6.17088 -4.24024 1.97543 2.41359 3.23831 3.29969 3.32247 3.37156 3.73683 4.22694 4.36753 4.43932 4.54782 4.78321 4.81018 4.85662 4.87632 5.07639 5.17080 5.19016 5.22562 5.28878 5.38488 5.46347 5.53746 5.58585 5.66999 5.83283 5.86508 5.95022 6.14097 6.18515 6.36633 6.91096 6.94571 7.31822 7.45040 7.50265 7.51975 7.66999 7.96876 8.62854 8.78432 9.11521 9.42792 10.93094 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.002970 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.665470 B = 9425.761663 C =10138.258312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.507 6.507 5 C -0.100 4.100 6 C 0.075 3.925 7 H 0.064 0.936 8 C -0.118 4.118 9 C -0.126 4.126 10 C 0.038 3.962 11 N -0.494 5.494 12 C 0.025 3.975 13 C 0.500 3.500 14 O -0.540 6.540 15 N -0.714 5.714 16 C 0.252 3.748 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.390 0.610 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.805 -5.378 -7.095 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.305 3.695 4 O -0.395 6.395 5 C -0.138 4.138 6 C -0.034 4.034 7 H 0.082 0.918 8 C -0.156 4.156 9 C -0.164 4.164 10 C -0.089 4.089 11 N -0.218 5.218 12 C -0.107 4.107 13 C 0.284 3.716 14 O -0.418 6.418 15 N -0.363 5.363 16 C 0.131 3.869 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.222 0.778 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.067 -5.602 -8.003 23.222 hybrid contribution -0.512 0.950 1.791 2.091 sum -21.578 -4.652 -6.213 22.932 Atomic orbital electron populations 1.23251 0.76446 1.03639 1.02507 1.86529 1.23373 1.33655 1.84174 1.23885 0.92314 0.81231 0.72031 1.90668 1.67348 1.36243 1.45195 1.21352 0.86245 0.99507 1.06739 1.22145 0.88920 0.93503 0.98791 0.91823 1.22388 0.97614 1.00863 0.94739 1.22580 0.94657 1.01423 0.97762 1.23430 1.02136 0.91117 0.92251 1.64323 1.08795 1.42507 1.06209 1.22267 0.95054 1.01843 0.91521 1.20207 0.88945 0.77999 0.84496 1.90616 1.66632 1.50937 1.33590 1.46447 1.11351 1.70338 1.08189 1.19084 0.73282 0.97335 0.97211 1.21229 0.93015 1.51014 0.92917 0.91935 1.24953 0.96356 0.94884 0.97829 1.69972 1.01842 1.48370 1.32091 0.86421 0.78249 0.78315 0.83955 1.20444 1.21005 1.19773 0.88150 0.91930 0.91936 0.86801 0.87328 0.91598 0.91060 0.90676 0.91136 0.94209 0.87082 0.92186 0.88325 0.77808 0.95498 0.95614 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.44 10.57 -39.26 -0.41 -3.85 16 3 C 0.46 4.86 7.47 36.01 0.27 5.13 16 4 O -0.51 -6.43 14.91 -18.75 -0.28 -6.71 16 5 C -0.10 -0.98 5.45 -27.88 -0.15 -1.13 16 6 C 0.08 0.86 2.14 -66.65 -0.14 0.71 16 7 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 8 C -0.12 -1.27 5.50 -25.37 -0.14 -1.41 16 9 C -0.13 -1.42 7.08 -24.78 -0.18 -1.59 16 10 C 0.04 0.53 5.56 -1.80 -0.01 0.52 16 11 N -0.49 -6.85 4.78 -223.90 -1.07 -7.92 16 12 C 0.02 0.35 5.30 -4.97 -0.03 0.32 16 13 C 0.50 9.70 7.56 -10.98 -0.08 9.62 16 14 O -0.54 -12.50 14.03 5.56 0.08 -12.43 16 15 N -0.71 -14.75 5.55 -61.47 -0.34 -15.09 16 16 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 17 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 18 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 21 Si 0.90 20.78 29.54 -169.99 -5.02 15.75 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 28 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.67 7.41 -51.93 -0.38 0.28 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.56 8.00 -51.93 -0.42 0.15 16 35 H 0.11 1.91 6.27 -51.93 -0.33 1.58 16 36 H 0.06 0.76 7.99 -51.93 -0.41 0.35 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -32.91 341.66 -7.45 -40.36 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.45 Total: 3.28 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 0.16 Total: 6.75 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.68 Total: -48.30 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.62 Total: -22.99 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.91 -7.45 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749466837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.526 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds