Wall clock time and date at job start Tue Mar 31 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99562 * 2 1 4 4 O 1.20824 * 120.00356 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99801 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.46952 * 176.37688 * 5 3 2 7 7 H 1.08997 * 109.90975 * 54.68288 * 6 5 3 8 8 C 1.53994 * 109.91570 * 293.57987 * 6 5 3 9 9 C 1.54595 * 105.22792 * 239.17584 * 8 6 5 10 10 C 1.55105 * 102.84394 * 338.15408 * 9 8 6 11 11 N 1.47897 * 110.07992 * 175.89220 * 6 5 3 12 12 C 1.46901 * 111.00084 * 265.28763 * 11 6 5 13 13 C 1.50704 * 109.46984 * 183.11244 * 12 11 6 14 14 O 1.21277 * 120.00419 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99647 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99807 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46794 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99465 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00605 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47034 * 90.00337 * 21 19 17 23 23 H 1.48501 * 109.46999 * 210.00364 * 21 19 17 24 24 H 1.48496 * 109.47039 * 330.00253 * 21 19 17 25 25 H 1.08999 * 109.46707 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46849 * 299.99842 * 1 2 3 27 27 H 1.08998 * 109.47794 * 60.00271 * 1 2 3 28 28 H 1.08997 * 109.47066 * 56.37513 * 5 3 2 29 29 H 1.08996 * 109.46870 * 296.37715 * 5 3 2 30 30 H 1.08999 * 110.31290 * 358.14353 * 8 6 5 31 31 H 1.09001 * 110.31170 * 120.21294 * 8 6 5 32 32 H 1.08998 * 110.72559 * 96.44919 * 9 8 6 33 33 H 1.09004 * 110.72904 * 219.73974 * 9 8 6 34 34 H 1.09001 * 110.59610 * 278.87403 * 10 9 8 35 35 H 1.09003 * 110.83021 * 155.84675 * 10 9 8 36 36 H 1.08995 * 109.47075 * 303.10851 * 12 11 6 37 37 H 1.08993 * 109.47197 * 63.11275 * 12 11 6 38 38 H 0.96997 * 119.99896 * 359.97438 * 15 13 12 39 39 H 1.08995 * 109.46937 * 299.99705 * 16 15 13 40 40 H 1.09001 * 109.47046 * 59.99635 * 16 15 13 41 41 H 0.96993 * 119.99944 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7394 -0.0916 7 1 3.5348 3.3148 0.7086 8 6 3.5973 3.3218 -1.4591 9 6 4.9213 3.7844 -2.1093 10 6 5.8622 3.9595 -0.8887 11 7 5.4724 2.8398 0.0061 12 6 5.8917 3.1010 1.3895 13 6 7.3882 3.2726 1.4370 14 8 8.0412 3.1854 0.4188 15 7 8.0009 3.5220 2.6113 16 6 9.4557 3.6882 2.6576 17 6 9.8857 3.9563 4.0768 18 1 9.1491 3.9982 4.8655 19 6 11.2197 4.1470 4.3685 20 7 12.1168 4.0955 3.4082 21 14 11.7527 4.4801 6.1277 22 1 12.0437 3.1929 6.8088 23 1 12.9740 5.3250 6.1233 24 1 10.6643 5.1870 6.8492 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.9586 0.7259 -0.8565 29 1 3.9533 0.8379 0.9198 30 1 3.1225 2.5554 -2.0717 31 1 2.9248 4.1692 -1.3262 32 1 5.3060 3.0215 -2.7861 33 1 4.7844 4.7313 -2.6316 34 1 5.6856 4.9193 -0.4031 35 1 6.9063 3.8675 -1.1878 36 1 5.4102 4.0102 1.7496 37 1 5.6020 2.2617 2.0216 38 1 7.4786 3.5914 3.4257 39 1 9.9369 2.7790 2.2973 40 1 9.7458 4.5277 2.0256 41 1 13.0552 4.2301 3.6135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749466837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:28 Heat of formation + Delta-G solvation = -145.152512 kcal Electronic energy + Delta-G solvation = -22376.058010 eV Core-core repulsion = 18868.951943 eV Total energy + Delta-G solvation = -3507.106068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68206 -40.83492 -39.34255 -37.45511 -36.09791 -34.35055 -33.38656 -32.83740 -29.73100 -28.98270 -27.39029 -26.79919 -24.44428 -22.50109 -22.31185 -21.32411 -20.81778 -18.93713 -18.59777 -17.85296 -17.44961 -17.29827 -17.21152 -16.62870 -16.46010 -16.14577 -15.68928 -15.08409 -14.79863 -14.53064 -14.40556 -14.01945 -13.90549 -13.78558 -13.48324 -13.19555 -13.13022 -12.90766 -12.80986 -12.71768 -12.33503 -12.22656 -12.01070 -11.79536 -11.72913 -11.56109 -11.48272 -11.45110 -10.79217 -10.60063 -9.80425 -9.45200 -8.28516 -6.44908 1.19365 1.43509 1.45776 1.56854 1.70110 1.80465 2.29666 2.49585 3.06411 3.09757 3.56412 3.63942 3.89096 4.01882 4.02960 4.19356 4.29074 4.33210 4.35305 4.36506 4.41785 4.49097 4.65253 4.74395 4.76779 4.93832 4.98397 5.08287 5.12911 5.21405 5.25597 5.26804 5.42364 5.50951 5.71042 5.84547 5.86529 5.94336 6.66545 6.74504 6.95676 7.24736 7.54187 8.83633 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.002970 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.665470 B = 9425.761663 C =10138.258312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.468 3.532 4 O -0.532 6.532 5 C -0.097 4.097 6 C 0.078 3.922 7 H 0.065 0.935 8 C -0.113 4.113 9 C -0.118 4.118 10 C 0.035 3.965 11 N -0.507 5.507 12 C 0.037 3.963 13 C 0.496 3.504 14 O -0.582 6.582 15 N -0.710 5.710 16 C 0.269 3.731 17 C -0.555 4.555 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.984 3.016 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.256 1.256 25 H 0.128 0.872 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.408 0.592 39 H -0.013 1.013 40 H -0.014 1.014 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.045 -5.888 -5.555 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.312 3.688 4 O -0.422 6.422 5 C -0.135 4.135 6 C -0.030 4.030 7 H 0.083 0.917 8 C -0.151 4.151 9 C -0.156 4.156 10 C -0.093 4.093 11 N -0.231 5.231 12 C -0.094 4.094 13 C 0.282 3.718 14 O -0.462 6.462 15 N -0.361 5.361 16 C 0.146 3.854 17 C -0.593 4.593 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.807 3.193 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.179 1.179 25 H 0.146 0.854 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.148 0.852 38 H 0.243 0.757 39 H 0.005 0.995 40 H 0.004 0.996 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.370 -6.132 -6.451 25.008 hybrid contribution 0.141 1.069 1.223 1.631 sum -23.229 -5.063 -5.227 24.342 Atomic orbital electron populations 1.23521 0.74890 1.05546 1.02511 1.86516 1.24933 1.33020 1.83769 1.23913 0.92429 0.81143 0.71286 1.90662 1.67918 1.37036 1.46541 1.21319 0.85988 0.98415 1.07793 1.22145 0.86923 0.94785 0.99144 0.91720 1.22361 0.97087 1.01136 0.94480 1.22532 0.94155 1.02271 0.96606 1.23311 1.00812 0.91283 0.93856 1.64292 1.10660 1.42367 1.05803 1.22215 0.90298 1.04243 0.92620 1.21199 0.91290 0.76136 0.83127 1.90614 1.68291 1.52303 1.34990 1.46179 1.09221 1.70852 1.09817 1.18493 0.76499 0.93799 0.96573 1.21629 0.93800 1.50581 0.93309 0.89842 1.26061 0.96439 0.94310 1.02826 1.70136 1.02351 1.49540 1.34952 0.85172 0.77953 0.78412 0.77771 1.19577 1.21034 1.17948 0.85377 0.92005 0.91898 0.86027 0.86054 0.90727 0.90922 0.90647 0.89739 0.94408 0.90765 0.89875 0.85210 0.75688 0.99502 0.99599 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.37 -6.15 10.57 -51.41 -0.54 -6.69 16 3 C 0.47 8.82 7.47 71.24 0.53 9.35 16 4 O -0.53 -12.48 14.91 21.97 0.33 -12.16 16 5 C -0.10 -1.65 5.45 29.85 0.16 -1.49 16 6 C 0.08 1.62 2.14 45.06 0.10 1.71 16 7 H 0.06 1.35 7.45 -2.39 -0.02 1.34 16 8 C -0.11 -2.21 5.50 31.47 0.17 -2.04 16 9 C -0.12 -2.53 7.08 31.86 0.23 -2.30 16 10 C 0.03 0.99 5.56 86.71 0.48 1.47 16 11 N -0.51 -13.41 4.78 -862.27 -4.13 -17.54 16 12 C 0.04 0.99 5.30 85.56 0.45 1.44 16 13 C 0.50 19.39 7.56 87.66 0.66 20.05 16 14 O -0.58 -28.11 14.03 -3.02 -0.04 -28.15 16 15 N -0.71 -29.50 5.55 -466.78 -2.59 -32.09 16 16 C 0.27 14.72 5.43 85.63 0.46 15.19 16 17 C -0.56 -30.08 9.28 25.60 0.24 -29.84 16 18 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 19 C 0.00 0.18 5.46 84.65 0.46 0.64 16 20 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 21 Si 0.98 42.21 29.54 68.60 2.03 44.23 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 25 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 28 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 1.35 7.41 -2.39 -0.02 1.33 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.04 1.06 8.00 -2.39 -0.02 1.04 16 35 H 0.07 2.68 6.27 -2.39 -0.01 2.67 16 36 H 0.08 1.88 7.99 -2.39 -0.02 1.86 16 37 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16 39 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -73.89 341.66 0.74 -73.15 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.25 Total: 19.50 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 5.15 Total: 15.69 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -6.43 Total: -105.57 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.26 Total: -47.00 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -73.89 0.74 -73.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749466837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.002 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds