Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99888 * 2 1 4 4 O 1.20817 * 120.00428 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99573 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47095 * 186.34181 * 5 3 2 7 7 H 1.09004 * 110.41608 * 308.03300 * 6 5 3 8 8 C 1.54905 * 110.37369 * 70.34100 * 6 5 3 9 9 C 1.55141 * 101.65470 * 155.90005 * 8 6 5 10 10 C 1.54322 * 103.01583 * 324.35202 * 9 8 6 11 11 N 1.47438 * 107.23777 * 22.28152 * 10 9 8 12 12 C 1.46897 * 111.00196 * 123.26163 * 11 10 9 13 13 C 1.50689 * 109.47306 * 76.18481 * 12 11 10 14 14 O 1.21283 * 120.00471 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99964 * 179.97438 * 13 12 11 16 16 C 1.46503 * 119.99657 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46679 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99836 * 179.72645 * 17 16 15 20 20 N 1.31519 * 120.00366 * 0.27744 * 19 17 16 21 21 Si 1.86801 * 120.00043 * 180.27369 * 19 17 16 22 22 H 1.48507 * 109.47093 * 60.00186 * 21 19 17 23 23 H 1.48498 * 109.47411 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47399 * 300.00204 * 21 19 17 25 25 H 1.09001 * 109.46923 * 60.00191 * 1 2 3 26 26 H 1.09002 * 109.47396 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47238 * 300.00504 * 1 2 3 28 28 H 1.09004 * 109.47398 * 66.34301 * 5 3 2 29 29 H 1.08994 * 109.47586 * 306.34236 * 5 3 2 30 30 H 1.09001 * 110.98898 * 37.81196 * 8 6 5 31 31 H 1.08997 * 111.02549 * 274.01044 * 8 6 5 32 32 H 1.08998 * 110.70799 * 205.96524 * 9 8 6 33 33 H 1.08999 * 110.70183 * 82.72987 * 9 8 6 34 34 H 1.09006 * 109.88404 * 262.87292 * 10 9 8 35 35 H 1.08994 * 110.02295 * 141.76806 * 10 9 8 36 36 H 1.09001 * 109.46739 * 316.18350 * 12 11 10 37 37 H 1.09002 * 109.46758 * 196.19134 * 12 11 10 38 38 H 0.96999 * 120.00022 * 0.02562 * 15 13 12 39 39 H 1.08997 * 109.47156 * 60.00819 * 16 15 13 40 40 H 1.08995 * 109.47260 * 300.00139 * 16 15 13 41 41 H 0.97000 * 120.00219 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0006 2.7332 0.1598 7 1 3.5007 3.3615 -0.5775 8 6 3.6926 3.2342 1.5929 9 6 4.7140 4.3918 1.7464 10 6 5.9458 3.8731 0.9749 11 7 5.4683 2.8508 0.0259 12 6 5.8455 3.1941 -1.3517 13 6 7.3089 2.9009 -1.5597 14 8 7.9723 2.4497 -0.6502 15 7 7.8803 3.1389 -2.7570 16 6 9.3031 2.8543 -2.9590 17 6 9.6900 3.2064 -4.3723 18 1 8.9502 3.6030 -5.0518 19 6 10.9899 3.0281 -4.7959 20 7 11.8910 2.5456 -3.9683 21 14 11.4713 3.4718 -6.5455 22 1 11.2126 4.9154 -6.7791 23 1 12.9145 3.1877 -6.7490 24 1 10.6691 2.6645 -7.4995 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.9512 0.8818 -0.9405 29 1 3.9607 0.6858 0.8286 30 1 3.8767 2.4510 2.3283 31 1 2.6698 3.6036 1.6666 32 1 4.9572 4.5545 2.7964 33 1 4.3316 5.3059 1.2922 34 1 6.6589 3.4297 1.6700 35 1 6.4178 4.6917 0.4317 36 1 5.6589 4.2538 -1.5260 37 1 5.2533 2.6014 -2.0489 38 1 7.3497 3.4994 -3.4845 39 1 9.4901 1.7948 -2.7840 40 1 9.8949 3.4477 -2.2621 41 1 12.8056 2.4205 -4.2663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749466839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -121.947996 kcal Electronic energy + Delta-G solvation = -22363.619973 eV Core-core repulsion = 18857.520128 eV Total energy + Delta-G solvation = -3506.099845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81891 -39.50977 -38.03767 -36.66017 -34.11251 -32.42171 -32.21899 -31.94614 -28.34726 -27.87727 -26.30146 -25.66283 -22.50595 -21.76923 -21.14960 -19.97387 -19.54319 -17.87764 -17.17678 -16.85962 -16.73245 -15.97275 -15.64134 -15.45183 -14.88188 -14.54081 -14.26213 -14.10517 -13.79651 -13.23461 -13.17567 -12.93414 -12.59024 -12.45322 -12.24988 -12.07674 -11.88878 -11.68391 -11.24107 -11.17996 -11.03483 -11.00023 -10.94764 -10.84609 -10.70687 -10.67214 -10.30155 -9.39354 -9.01712 -8.71029 -8.25504 -7.82599 -6.15191 -4.22163 1.98799 2.42432 3.25797 3.30636 3.32037 3.44266 3.70948 4.24677 4.37697 4.42455 4.55117 4.73591 4.80643 4.87389 4.88960 5.04474 5.12676 5.20604 5.20985 5.23415 5.37889 5.42923 5.55613 5.59424 5.61689 5.74548 5.84054 5.89455 6.02372 6.16014 6.26731 6.94532 6.96553 7.34993 7.48932 7.51640 7.54966 7.69898 7.99317 8.67377 8.81680 9.17493 9.44807 10.94955 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.003068 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.322354 B = 9125.539574 C = 9858.309908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.509 6.509 5 C -0.101 4.101 6 C 0.082 3.918 7 H 0.068 0.932 8 C -0.123 4.123 9 C -0.143 4.143 10 C 0.054 3.946 11 N -0.506 5.506 12 C 0.029 3.971 13 C 0.498 3.502 14 O -0.535 6.535 15 N -0.717 5.717 16 C 0.252 3.748 17 C -0.544 4.544 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.389 0.611 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.654 -0.783 8.756 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.397 6.397 5 C -0.139 4.139 6 C -0.026 4.026 7 H 0.086 0.914 8 C -0.161 4.161 9 C -0.181 4.181 10 C -0.073 4.073 11 N -0.230 5.230 12 C -0.103 4.103 13 C 0.282 3.718 14 O -0.412 6.412 15 N -0.367 5.367 16 C 0.132 3.868 17 C -0.582 4.582 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.221 0.779 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.914 -1.350 9.532 23.023 hybrid contribution -0.446 1.177 -1.650 2.075 sum -21.360 -0.173 7.882 22.768 Atomic orbital electron populations 1.23254 0.76446 1.03657 1.02486 1.86533 1.23367 1.33624 1.84110 1.23865 0.92281 0.81211 0.71886 1.90652 1.67389 1.36264 1.45424 1.21314 0.86231 0.99502 1.06885 1.22298 0.88294 0.93712 0.98294 0.91352 1.22760 0.99592 0.98283 0.95495 1.22828 0.95928 0.98100 1.01281 1.22780 0.96606 0.92799 0.95164 1.62942 1.09531 1.46534 1.03975 1.22260 0.96066 1.00543 0.91385 1.20275 0.88594 0.79480 0.83494 1.90657 1.64236 1.44428 1.41929 1.46456 1.13894 1.64434 1.11924 1.19057 0.74488 0.96866 0.96423 1.21201 0.95433 1.44970 0.96592 0.92006 1.24951 0.96185 0.94821 0.98053 1.69967 1.03210 1.43749 1.35382 0.86484 0.77557 0.78930 0.83979 1.20104 1.21072 1.20067 0.91929 0.88142 0.91942 0.87108 0.86819 0.90671 0.90230 0.90599 0.91545 0.89632 0.92583 0.91977 0.88699 0.77929 0.95572 0.95691 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.53 10.56 -39.25 -0.41 -3.94 16 3 C 0.46 4.96 7.72 36.01 0.28 5.23 16 4 O -0.51 -6.44 14.73 -18.74 -0.28 -6.72 16 5 C -0.10 -1.02 5.64 -27.88 -0.16 -1.18 16 6 C 0.08 0.93 1.96 -66.19 -0.13 0.80 16 7 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 8 C -0.12 -1.26 5.94 -24.59 -0.15 -1.41 16 9 C -0.14 -1.47 6.94 -24.91 -0.17 -1.64 16 10 C 0.05 0.72 6.03 -2.84 -0.02 0.70 16 11 N -0.51 -6.97 4.39 -224.82 -0.99 -7.96 16 12 C 0.03 0.41 5.08 -4.98 -0.03 0.39 16 13 C 0.50 9.82 7.66 -10.99 -0.08 9.74 16 14 O -0.54 -12.79 15.88 5.56 0.09 -12.71 16 15 N -0.72 -14.99 5.55 -61.47 -0.34 -15.33 16 16 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 17 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 18 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 21 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 28 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.11 1.08 8.01 -51.93 -0.42 0.66 16 30 H 0.07 0.73 7.96 -51.93 -0.41 0.32 16 31 H 0.08 0.82 7.54 -51.93 -0.39 0.42 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.78 7.36 -51.93 -0.38 0.40 16 36 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 37 H 0.09 1.15 7.98 -51.93 -0.41 0.73 16 38 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -33.56 344.50 -7.34 -40.90 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.48 Total: 2.96 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 0.17 Total: 7.20 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.59 Total: -48.72 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.60 Total: -23.37 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.56 -7.34 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749466839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.045 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds