Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99888 * 2 1 4 4 O 1.20817 * 120.00428 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99573 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47095 * 186.34181 * 5 3 2 7 7 H 1.09004 * 110.41608 * 308.03300 * 6 5 3 8 8 C 1.54905 * 110.37369 * 70.34100 * 6 5 3 9 9 C 1.55141 * 101.65470 * 155.90005 * 8 6 5 10 10 C 1.54322 * 103.01583 * 324.35202 * 9 8 6 11 11 N 1.47438 * 107.23777 * 22.28152 * 10 9 8 12 12 C 1.46897 * 111.00196 * 123.26163 * 11 10 9 13 13 C 1.50689 * 109.47306 * 76.18481 * 12 11 10 14 14 O 1.21283 * 120.00471 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99964 * 179.97438 * 13 12 11 16 16 C 1.46503 * 119.99657 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46679 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99836 * 179.72645 * 17 16 15 20 20 N 1.31519 * 120.00366 * 0.27744 * 19 17 16 21 21 Si 1.86801 * 120.00043 * 180.27369 * 19 17 16 22 22 H 1.48507 * 109.47093 * 60.00186 * 21 19 17 23 23 H 1.48498 * 109.47411 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47399 * 300.00204 * 21 19 17 25 25 H 1.09001 * 109.46923 * 60.00191 * 1 2 3 26 26 H 1.09002 * 109.47396 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47238 * 300.00504 * 1 2 3 28 28 H 1.09004 * 109.47398 * 66.34301 * 5 3 2 29 29 H 1.08994 * 109.47586 * 306.34236 * 5 3 2 30 30 H 1.09001 * 110.98898 * 37.81196 * 8 6 5 31 31 H 1.08997 * 111.02549 * 274.01044 * 8 6 5 32 32 H 1.08998 * 110.70799 * 205.96524 * 9 8 6 33 33 H 1.08999 * 110.70183 * 82.72987 * 9 8 6 34 34 H 1.09006 * 109.88404 * 262.87292 * 10 9 8 35 35 H 1.08994 * 110.02295 * 141.76806 * 10 9 8 36 36 H 1.09001 * 109.46739 * 316.18350 * 12 11 10 37 37 H 1.09002 * 109.46758 * 196.19134 * 12 11 10 38 38 H 0.96999 * 120.00022 * 0.02562 * 15 13 12 39 39 H 1.08997 * 109.47156 * 60.00819 * 16 15 13 40 40 H 1.08995 * 109.47260 * 300.00139 * 16 15 13 41 41 H 0.97000 * 120.00219 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0006 2.7332 0.1598 7 1 3.5007 3.3615 -0.5775 8 6 3.6926 3.2342 1.5929 9 6 4.7140 4.3918 1.7464 10 6 5.9458 3.8731 0.9749 11 7 5.4683 2.8508 0.0259 12 6 5.8455 3.1941 -1.3517 13 6 7.3089 2.9009 -1.5597 14 8 7.9723 2.4497 -0.6502 15 7 7.8803 3.1389 -2.7570 16 6 9.3031 2.8543 -2.9590 17 6 9.6900 3.2064 -4.3723 18 1 8.9502 3.6030 -5.0518 19 6 10.9899 3.0281 -4.7959 20 7 11.8910 2.5456 -3.9683 21 14 11.4713 3.4718 -6.5455 22 1 11.2126 4.9154 -6.7791 23 1 12.9145 3.1877 -6.7490 24 1 10.6691 2.6645 -7.4995 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.9512 0.8818 -0.9405 29 1 3.9607 0.6858 0.8286 30 1 3.8767 2.4510 2.3283 31 1 2.6698 3.6036 1.6666 32 1 4.9572 4.5545 2.7964 33 1 4.3316 5.3059 1.2922 34 1 6.6589 3.4297 1.6700 35 1 6.4178 4.6917 0.4317 36 1 5.6589 4.2538 -1.5260 37 1 5.2533 2.6014 -2.0489 38 1 7.3497 3.4994 -3.4845 39 1 9.4901 1.7948 -2.7840 40 1 9.8949 3.4477 -2.2621 41 1 12.8056 2.4205 -4.2663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749466839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = -146.538290 kcal Electronic energy + Delta-G solvation = -22364.686288 eV Core-core repulsion = 18857.520128 eV Total energy + Delta-G solvation = -3507.166160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65374 -40.76309 -39.39731 -37.47315 -36.06352 -34.32130 -33.32386 -32.90457 -29.70685 -29.01882 -27.40544 -26.85617 -24.43583 -22.58540 -22.20660 -21.22581 -20.83469 -18.91799 -18.66101 -17.85481 -17.49240 -17.36037 -17.19857 -16.68951 -16.49752 -15.88650 -15.72499 -15.07351 -14.78150 -14.47985 -14.37994 -14.05372 -13.98030 -13.62573 -13.58191 -13.34400 -13.04817 -12.89065 -12.81765 -12.66636 -12.26781 -12.22230 -12.08335 -11.80765 -11.75574 -11.58735 -11.52001 -11.49132 -10.77623 -10.67280 -9.77063 -9.33330 -8.27751 -6.44404 1.18092 1.43585 1.47622 1.55764 1.68966 1.85198 2.30516 2.50154 3.06894 3.11652 3.54970 3.63347 3.89629 4.01760 4.03606 4.15962 4.27872 4.32419 4.34656 4.35224 4.38251 4.44283 4.70350 4.72665 4.74020 4.90342 4.97525 5.07173 5.11152 5.14602 5.27311 5.32297 5.41588 5.51284 5.71675 5.87090 5.92950 5.98786 6.67058 6.73551 6.99545 7.25382 7.57938 8.84217 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.003068 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.322354 B = 9125.539574 C = 9858.309908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.471 3.529 4 O -0.531 6.531 5 C -0.100 4.100 6 C 0.086 3.914 7 H 0.071 0.929 8 C -0.118 4.118 9 C -0.132 4.132 10 C 0.051 3.949 11 N -0.524 5.524 12 C 0.043 3.957 13 C 0.495 3.505 14 O -0.582 6.582 15 N -0.712 5.712 16 C 0.270 3.730 17 C -0.556 4.556 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.286 1.286 24 H -0.262 1.262 25 H 0.062 0.938 26 H 0.127 0.873 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.407 0.593 39 H -0.014 1.014 40 H -0.015 1.015 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.874 -0.223 7.439 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.315 3.685 4 O -0.421 6.421 5 C -0.138 4.138 6 C -0.022 4.022 7 H 0.089 0.911 8 C -0.156 4.156 9 C -0.171 4.171 10 C -0.076 4.076 11 N -0.249 5.249 12 C -0.088 4.088 13 C 0.282 3.718 14 O -0.462 6.462 15 N -0.363 5.363 16 C 0.147 3.853 17 C -0.594 4.594 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.807 3.193 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.186 1.186 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.142 0.858 38 H 0.242 0.758 39 H 0.004 0.996 40 H 0.003 0.997 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.199 -0.786 8.208 24.621 hybrid contribution 0.208 0.942 -1.155 1.504 sum -22.991 0.156 7.054 24.049 Atomic orbital electron populations 1.23529 0.74811 1.05552 1.02581 1.86519 1.25017 1.33070 1.83733 1.23838 0.92295 0.81149 0.71225 1.90643 1.67871 1.36941 1.46623 1.21289 0.86148 0.98902 1.07415 1.22309 0.86379 0.94515 0.99009 0.91063 1.22736 0.99638 0.98286 0.94957 1.22771 0.94315 0.98350 1.01634 1.22729 0.97589 0.92276 0.95020 1.62840 1.11379 1.47020 1.03644 1.22153 0.91551 1.02545 0.92544 1.21316 0.90821 0.77642 0.82048 1.90636 1.66013 1.46281 1.43288 1.46195 1.11887 1.64837 1.13410 1.18474 0.77383 0.93614 0.95852 1.21607 0.96235 1.44764 0.96815 0.89832 1.26067 0.96126 0.94355 1.03080 1.70136 1.03743 1.45084 1.38048 0.85221 0.77040 0.79269 0.77766 1.18695 1.21148 1.18613 0.91954 0.85445 0.91759 0.86585 0.86318 0.90342 0.89789 0.89370 0.90510 0.91941 0.93621 0.89471 0.85802 0.75754 0.99601 0.99720 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.37 -6.53 10.56 -51.38 -0.54 -7.07 16 3 C 0.47 9.21 7.72 71.24 0.55 9.76 16 4 O -0.53 -12.48 14.73 21.99 0.32 -12.16 16 5 C -0.10 -1.83 5.64 29.85 0.17 -1.66 16 6 C 0.09 1.76 1.96 45.39 0.09 1.85 16 7 H 0.07 1.45 7.45 -2.38 -0.02 1.44 16 8 C -0.12 -2.19 5.94 31.98 0.19 -2.00 16 9 C -0.13 -2.49 6.94 31.78 0.22 -2.27 16 10 C 0.05 1.35 6.03 86.65 0.52 1.87 16 11 N -0.52 -13.87 4.39 -865.20 -3.80 -17.67 16 12 C 0.04 1.15 5.08 85.55 0.43 1.59 16 13 C 0.50 19.65 7.66 87.65 0.67 20.32 16 14 O -0.58 -28.89 15.88 -3.04 -0.05 -28.94 16 15 N -0.71 -29.90 5.55 -466.79 -2.59 -32.49 16 16 C 0.27 14.88 5.43 85.63 0.46 15.34 16 17 C -0.56 -30.30 9.28 25.60 0.24 -30.07 16 18 H 0.08 4.09 7.60 -2.91 -0.02 4.06 16 19 C 0.00 0.18 5.46 84.65 0.46 0.64 16 20 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 21 Si 0.98 42.31 29.54 68.60 2.03 44.34 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 23 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 25 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 26 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 28 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.12 2.07 8.01 -2.39 -0.02 2.05 16 30 H 0.08 1.40 7.96 -2.39 -0.02 1.38 16 31 H 0.08 1.53 7.54 -2.39 -0.02 1.51 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.05 1.26 7.36 -2.39 -0.02 1.25 16 36 H 0.09 1.95 7.76 -2.39 -0.02 1.93 16 37 H 0.12 2.63 7.98 -2.39 -0.02 2.61 16 38 H 0.41 13.95 8.32 -92.71 -0.77 13.17 16 39 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -75.02 344.50 1.11 -73.91 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.25 Total: 19.42 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 5.21 Total: 16.89 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -6.10 Total: -106.39 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -0.27 Total: -48.17 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -75.02 1.11 -73.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749466839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.629 kcal (2) G-P(sol) polarization free energy of solvation -75.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds