Wall clock time and date at job start Tue Mar 31 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20825 * 120.00211 * 2 1 4 4 O 1.34229 * 119.99769 * 180.02562 * 2 1 3 5 5 C 1.45198 * 116.99953 * 180.02562 * 4 2 1 6 6 C 1.53118 * 109.52435 * 150.00022 * 5 4 2 7 7 C 1.53036 * 109.28068 * 177.62030 * 6 5 4 8 8 N 1.46843 * 109.52229 * 300.82162 * 7 6 5 9 9 C 1.46902 * 110.99818 * 185.83572 * 8 7 6 10 10 C 1.50702 * 109.47027 * 169.99758 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50694 * 109.47550 * 180.02562 * 13 12 10 15 15 H 1.08008 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00446 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00230 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47041 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46896 * 120.00102 * 18 16 14 21 21 H 1.48504 * 109.47040 * 240.00259 * 18 16 14 22 22 C 1.46848 * 111.20193 * 61.74013 * 8 7 6 23 23 C 1.53031 * 109.52183 * 298.25870 * 22 8 7 24 24 H 1.08994 * 109.47560 * 239.99754 * 1 2 3 25 25 H 1.09007 * 109.47085 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47270 * 119.99139 * 1 2 3 27 27 H 1.08994 * 109.52661 * 29.86862 * 5 4 2 28 28 H 1.09001 * 109.50142 * 57.67831 * 6 5 4 29 29 H 1.08995 * 109.50409 * 297.56453 * 6 5 4 30 30 H 1.08996 * 109.46465 * 180.80442 * 7 6 5 31 31 H 1.09004 * 109.45131 * 60.83038 * 7 6 5 32 32 H 1.09004 * 109.47131 * 50.00001 * 9 8 7 33 33 H 1.08994 * 109.47471 * 289.99751 * 9 8 7 34 34 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 35 35 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 36 36 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 37 37 H 0.97000 * 119.99614 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.45649 * 58.27112 * 22 8 7 39 39 H 1.08995 * 109.46466 * 178.24178 * 22 8 7 40 40 H 1.09001 * 109.50516 * 299.23843 * 23 22 8 41 41 H 1.09000 * 109.50603 * 179.12077 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6281 -1.0865 0.0001 6 6 4.2042 -2.3083 0.7211 7 6 5.7326 -2.2530 0.6667 8 7 6.1735 -2.2358 -0.7339 9 6 7.6371 -2.3223 -0.8261 10 6 8.0374 -2.5489 -2.2612 11 8 7.1873 -2.6298 -3.1224 12 7 9.3405 -2.6555 -2.5885 13 6 9.7300 -2.8697 -3.9844 14 6 11.2316 -2.9536 -4.0798 15 1 11.8355 -2.8574 -3.1895 16 6 11.8346 -3.1542 -5.3034 17 7 11.0993 -3.2719 -6.3874 18 14 13.6960 -3.2590 -5.4215 19 1 14.2876 -3.0974 -4.0690 20 1 14.0831 -4.5810 -5.9759 21 1 14.1967 -2.1822 -6.3132 22 6 5.6715 -1.0466 -1.4341 23 6 4.1413 -1.0660 -1.4424 24 1 -0.3634 -0.5138 0.8899 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8901 27 1 3.9451 -0.1782 0.5124 28 1 3.8553 -3.2177 0.2316 29 1 3.8767 -2.3054 1.7606 30 1 6.1458 -3.1289 1.1668 31 1 6.0812 -1.3502 1.1683 32 1 7.9912 -3.1523 -0.2147 33 1 8.0793 -1.3927 -0.4680 34 1 10.0205 -2.5905 -1.8998 35 1 9.2908 -3.7996 -4.3456 36 1 9.3728 -2.0389 -4.5929 37 1 11.5235 -3.4126 -7.2483 38 1 6.0206 -0.1496 -0.9225 39 1 6.0403 -1.0464 -2.4598 40 1 3.7915 -1.9558 -1.9658 41 1 3.7688 -0.1754 -1.9486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753188919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:51 Heat of formation + Delta-G solvation = -127.711074 kcal Electronic energy + Delta-G solvation = -22290.733001 eV Core-core repulsion = 18784.383251 eV Total energy + Delta-G solvation = -3506.349750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81351 -39.43252 -37.99416 -36.45830 -34.16521 -32.92990 -32.29862 -30.99257 -30.47837 -28.19703 -26.30229 -23.63116 -23.36696 -22.22419 -21.16672 -20.07295 -19.65197 -17.88466 -17.11335 -16.78514 -16.40344 -15.82766 -15.62252 -15.27484 -14.87583 -14.45240 -14.28535 -13.95241 -13.88238 -13.52101 -13.35169 -12.90655 -12.80679 -12.65386 -12.37384 -12.17197 -11.92112 -11.76732 -11.41722 -11.33885 -11.23515 -10.95174 -10.89347 -10.80594 -10.64541 -10.33583 -10.19782 -9.38074 -9.01531 -8.73821 -8.26025 -7.85488 -6.17115 -4.23935 1.97330 2.48666 3.23018 3.30000 3.32962 3.38027 3.61414 4.23302 4.38480 4.40694 4.52612 4.61900 4.81812 4.89622 4.93090 5.05214 5.16581 5.19033 5.22199 5.34430 5.36155 5.42016 5.50213 5.58222 5.61654 5.69214 5.76002 5.91744 6.10015 6.20511 6.39679 6.93727 7.08022 7.32635 7.45354 7.52273 7.53403 7.67522 7.97038 8.63730 8.79036 9.12556 9.42935 10.93132 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043192 B = 0.002659 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.119230 B =10527.181043 C =10861.062235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.457 3.543 3 O -0.516 6.516 4 O -0.352 6.352 5 C 0.088 3.912 6 C -0.110 4.110 7 C 0.059 3.941 8 N -0.520 5.520 9 C 0.036 3.964 10 C 0.498 3.502 11 O -0.538 6.538 12 N -0.715 5.715 13 C 0.251 3.749 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.055 3.945 23 C -0.127 4.127 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.390 0.610 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.265 0.735 38 H 0.029 0.971 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.769 3.940 16.949 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.300 3.700 3 O -0.404 6.404 4 O -0.269 6.269 5 C 0.033 3.967 6 C -0.148 4.148 7 C -0.069 4.069 8 N -0.245 5.245 9 C -0.096 4.096 10 C 0.282 3.718 11 O -0.416 6.416 12 N -0.364 5.364 13 C 0.130 3.870 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.073 4.073 23 C -0.165 4.165 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.222 0.778 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.333 3.733 15.863 23.791 hybrid contribution 1.797 0.750 0.550 2.023 sum -15.536 4.482 16.414 23.040 Atomic orbital electron populations 1.21643 0.87302 1.05788 1.05722 1.23846 0.92194 0.81909 0.72045 1.90690 1.70955 1.33148 1.45597 1.86548 1.22537 1.34455 1.83372 1.22929 0.75555 1.00051 0.98122 1.21650 0.94646 0.98105 1.00399 1.22068 0.94331 1.01304 0.89210 1.61577 1.09190 1.41055 1.12701 1.22001 0.88605 1.02307 0.96645 1.20283 0.83439 0.78156 0.89918 1.90630 1.50009 1.50361 1.50626 1.46458 1.05782 1.71435 1.12726 1.19086 0.94943 0.97184 0.75770 1.21267 0.91002 1.51752 0.94067 0.91871 1.24963 0.98910 0.94777 0.95442 1.69988 1.35481 1.48021 0.98775 0.86362 0.84559 0.77787 0.78204 1.19654 1.20789 1.20806 1.22218 0.93749 0.89450 1.01855 1.21948 0.95889 1.03573 0.95101 0.88313 0.88219 0.88143 0.90119 0.89480 0.90706 0.89593 0.94695 0.88148 0.92344 0.77816 0.95516 0.95624 0.92501 0.95320 0.87443 0.89608 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.43 36.00 0.38 -0.43 16 2 C 0.46 4.77 8.04 36.00 0.29 5.06 16 3 O -0.52 -7.18 16.30 -18.75 -0.31 -7.48 16 4 O -0.35 -3.90 9.89 -39.26 -0.39 -4.29 16 5 C 0.09 1.02 2.52 -26.61 -0.07 0.95 16 6 C -0.11 -1.10 5.76 -26.65 -0.15 -1.25 16 7 C 0.06 0.61 5.46 -3.84 -0.02 0.59 16 8 N -0.52 -7.27 4.40 -236.12 -1.04 -8.31 16 9 C 0.04 0.50 5.45 -4.97 -0.03 0.47 16 10 C 0.50 9.75 7.50 -10.98 -0.08 9.67 16 11 O -0.54 -12.71 14.33 5.55 0.08 -12.63 16 12 N -0.71 -14.81 5.55 -61.47 -0.34 -15.16 16 13 C 0.25 6.63 5.43 -5.20 -0.03 6.60 16 14 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 15 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 18 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 C 0.05 0.80 5.11 -3.84 -0.02 0.78 16 23 C -0.13 -1.69 5.74 -26.65 -0.15 -1.84 16 24 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.10 0.47 8.12 -51.92 -0.42 0.05 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.99 7.16 -51.93 -0.37 0.62 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.76 8.01 -51.93 -0.42 0.35 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 1.17 7.99 -51.93 -0.41 0.76 16 33 H 0.06 0.72 8.12 -51.93 -0.42 0.29 16 34 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 1.91 5.78 -51.93 -0.30 1.61 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -34.09 341.61 -7.88 -41.98 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.45 Total: 3.07 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.30 Total: 7.25 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.64 Total: -48.85 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.61 Total: -24.40 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.09 -7.88 -41.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753188919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.736 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds