Wall clock time and date at job start Tue Mar 31 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20825 * 120.00211 * 2 1 4 4 O 1.34229 * 119.99769 * 180.02562 * 2 1 3 5 5 C 1.45198 * 116.99953 * 180.02562 * 4 2 1 6 6 C 1.53118 * 109.52435 * 150.00022 * 5 4 2 7 7 C 1.53036 * 109.28068 * 177.62030 * 6 5 4 8 8 N 1.46843 * 109.52229 * 300.82162 * 7 6 5 9 9 C 1.46902 * 110.99818 * 185.83572 * 8 7 6 10 10 C 1.50702 * 109.47027 * 169.99758 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50694 * 109.47550 * 180.02562 * 13 12 10 15 15 H 1.08008 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00446 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99703 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00230 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47041 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46896 * 120.00102 * 18 16 14 21 21 H 1.48504 * 109.47040 * 240.00259 * 18 16 14 22 22 C 1.46848 * 111.20193 * 61.74013 * 8 7 6 23 23 C 1.53031 * 109.52183 * 298.25870 * 22 8 7 24 24 H 1.08994 * 109.47560 * 239.99754 * 1 2 3 25 25 H 1.09007 * 109.47085 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47270 * 119.99139 * 1 2 3 27 27 H 1.08994 * 109.52661 * 29.86862 * 5 4 2 28 28 H 1.09001 * 109.50142 * 57.67831 * 6 5 4 29 29 H 1.08995 * 109.50409 * 297.56453 * 6 5 4 30 30 H 1.08996 * 109.46465 * 180.80442 * 7 6 5 31 31 H 1.09004 * 109.45131 * 60.83038 * 7 6 5 32 32 H 1.09004 * 109.47131 * 50.00001 * 9 8 7 33 33 H 1.08994 * 109.47471 * 289.99751 * 9 8 7 34 34 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 35 35 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 36 36 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 37 37 H 0.97000 * 119.99614 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.45649 * 58.27112 * 22 8 7 39 39 H 1.08995 * 109.46466 * 178.24178 * 22 8 7 40 40 H 1.09001 * 109.50516 * 299.23843 * 23 22 8 41 41 H 1.09000 * 109.50603 * 179.12077 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6281 -1.0865 0.0001 6 6 4.2042 -2.3083 0.7211 7 6 5.7326 -2.2530 0.6667 8 7 6.1735 -2.2358 -0.7339 9 6 7.6371 -2.3223 -0.8261 10 6 8.0374 -2.5489 -2.2612 11 8 7.1873 -2.6298 -3.1224 12 7 9.3405 -2.6555 -2.5885 13 6 9.7300 -2.8697 -3.9844 14 6 11.2316 -2.9536 -4.0798 15 1 11.8355 -2.8574 -3.1895 16 6 11.8346 -3.1542 -5.3034 17 7 11.0993 -3.2719 -6.3874 18 14 13.6960 -3.2590 -5.4215 19 1 14.2876 -3.0974 -4.0690 20 1 14.0831 -4.5810 -5.9759 21 1 14.1967 -2.1822 -6.3132 22 6 5.6715 -1.0466 -1.4341 23 6 4.1413 -1.0660 -1.4424 24 1 -0.3634 -0.5138 0.8899 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8901 27 1 3.9451 -0.1782 0.5124 28 1 3.8553 -3.2177 0.2316 29 1 3.8767 -2.3054 1.7606 30 1 6.1458 -3.1289 1.1668 31 1 6.0812 -1.3502 1.1683 32 1 7.9912 -3.1523 -0.2147 33 1 8.0793 -1.3927 -0.4680 34 1 10.0205 -2.5905 -1.8998 35 1 9.2908 -3.7996 -4.3456 36 1 9.3728 -2.0389 -4.5929 37 1 11.5235 -3.4126 -7.2483 38 1 6.0206 -0.1496 -0.9225 39 1 6.0403 -1.0464 -2.4598 40 1 3.7915 -1.9558 -1.9658 41 1 3.7688 -0.1754 -1.9486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753188919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:50 Heat of formation + Delta-G solvation = -153.217150 kcal Electronic energy + Delta-G solvation = -22291.839028 eV Core-core repulsion = 18784.383251 eV Total energy + Delta-G solvation = -3507.455777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.71172 -40.79258 -39.25084 -37.43620 -36.08712 -34.36804 -33.91209 -31.95739 -31.10069 -29.88425 -27.81824 -25.00207 -24.36013 -23.86951 -22.02235 -21.34910 -21.02341 -18.92671 -18.73803 -17.76568 -17.45809 -17.24822 -17.09389 -16.55119 -16.44785 -15.80993 -15.63238 -15.22258 -14.91131 -14.56031 -14.37250 -14.20273 -14.06751 -13.85874 -13.40528 -13.38790 -13.13021 -12.96468 -12.87534 -12.74887 -12.47430 -12.35392 -12.28041 -12.21524 -11.72846 -11.56475 -11.45495 -11.22378 -10.81322 -10.60502 -9.79571 -9.31313 -8.29479 -6.45942 1.16916 1.42924 1.44103 1.57551 1.73092 1.81620 2.26764 2.45415 2.99958 3.05540 3.61050 3.64281 3.68193 3.91859 3.97431 4.14077 4.21095 4.28280 4.39341 4.43933 4.45487 4.57818 4.58158 4.68316 4.75403 4.87589 4.91791 5.00648 5.03192 5.12163 5.19401 5.25022 5.50117 5.55524 5.70956 5.85190 5.90436 6.09661 6.66084 6.71183 6.96858 7.23938 7.55497 8.83001 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043192 B = 0.002659 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.119230 B =10527.181043 C =10861.062235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.451 3.549 3 O -0.557 6.557 4 O -0.354 6.354 5 C 0.090 3.910 6 C -0.104 4.104 7 C 0.059 3.941 8 N -0.541 5.541 9 C 0.050 3.950 10 C 0.492 3.508 11 O -0.585 6.585 12 N -0.710 5.710 13 C 0.268 3.732 14 C -0.554 4.554 15 H 0.085 0.915 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.985 3.015 19 H -0.252 1.252 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.060 3.940 23 C -0.122 4.122 24 H 0.124 0.876 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.408 0.592 35 H -0.014 1.014 36 H -0.016 1.016 37 H 0.268 0.732 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 3.679 20.075 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.297 3.703 3 O -0.448 6.448 4 O -0.270 6.270 5 C 0.035 3.965 6 C -0.142 4.142 7 C -0.068 4.068 8 N -0.266 5.266 9 C -0.081 4.081 10 C 0.279 3.721 11 O -0.466 6.466 12 N -0.361 5.361 13 C 0.145 3.855 14 C -0.591 4.591 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.175 1.175 20 H -0.205 1.205 21 H -0.206 1.206 22 C -0.068 4.068 23 C -0.160 4.160 24 H 0.143 0.857 25 H 0.125 0.875 26 H 0.135 0.865 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.104 0.896 34 H 0.244 0.756 35 H 0.003 0.997 36 H 0.002 0.998 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.765 3.467 19.056 25.617 hybrid contribution 1.497 0.842 -0.443 1.774 sum -15.268 4.310 18.613 24.457 Atomic orbital electron populations 1.21790 0.83287 1.06988 1.07645 1.24909 0.93943 0.81007 0.70436 1.90673 1.72087 1.34367 1.47648 1.86580 1.22154 1.34993 1.83286 1.22854 0.76188 1.00853 0.96581 1.21660 0.94399 0.96574 1.01571 1.22215 0.94493 1.03173 0.86890 1.61516 1.09152 1.40705 1.15245 1.21952 0.89052 1.04961 0.92107 1.21411 0.82197 0.76194 0.92282 1.90619 1.51167 1.51956 1.52842 1.46185 1.07202 1.71865 1.10844 1.18490 0.95018 0.93499 0.78468 1.21665 0.91151 1.51289 0.95042 0.89694 1.26096 1.04788 0.94014 0.94930 1.70152 1.38153 1.49174 0.99619 0.85100 0.77346 0.77654 0.79042 1.17502 1.20476 1.20563 1.22012 0.94371 0.90485 0.99928 1.21841 0.95290 1.02262 0.96592 0.85748 0.87464 0.86506 0.90642 0.90257 0.87970 0.87121 0.93158 0.84620 0.89597 0.75584 0.99652 0.99775 0.92297 0.94332 0.91521 0.91151 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 10.43 71.24 0.74 -0.49 16 2 C 0.45 9.04 8.04 71.24 0.57 9.61 16 3 O -0.56 -15.51 16.30 21.97 0.36 -15.15 16 4 O -0.35 -7.48 9.89 -51.41 -0.51 -7.99 16 5 C 0.09 2.01 2.52 30.68 0.08 2.09 16 6 C -0.10 -1.82 5.76 30.65 0.18 -1.65 16 7 C 0.06 1.04 5.46 86.33 0.47 1.51 16 8 N -0.54 -14.35 4.40 -900.94 -3.96 -18.31 16 9 C 0.05 1.28 5.45 85.56 0.47 1.75 16 10 C 0.49 19.47 7.50 87.66 0.66 20.13 16 11 O -0.59 -29.10 14.33 -3.04 -0.04 -29.15 16 12 N -0.71 -29.68 5.55 -466.79 -2.59 -32.27 16 13 C 0.27 14.82 5.43 85.63 0.46 15.29 16 14 C -0.55 -30.15 9.28 25.60 0.24 -29.91 16 15 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 16 C 0.00 0.06 5.46 84.65 0.46 0.52 16 17 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 18 Si 0.99 42.42 29.54 68.60 2.03 44.45 16 19 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.06 1.78 5.11 86.32 0.44 2.22 16 23 C -0.12 -3.34 5.74 30.65 0.18 -3.16 16 24 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.11 0.81 8.12 -2.38 -0.02 0.79 16 26 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.08 1.79 7.16 -2.39 -0.02 1.77 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 1.45 8.01 -2.39 -0.02 1.43 16 31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.14 2.60 7.99 -2.38 -0.02 2.58 16 33 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16 34 H 0.41 13.78 8.32 -92.71 -0.77 13.01 16 35 H -0.01 -0.91 8.14 -2.39 -0.02 -0.92 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 2.53 5.78 -2.39 -0.01 2.52 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -79.26 341.61 0.77 -78.50 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.25 Total: 18.48 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 4.95 Total: 17.91 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -6.27 Total: -107.05 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.19 Total: -52.28 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -79.26 0.77 -78.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753188919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.720 kcal (2) G-P(sol) polarization free energy of solvation -79.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds