Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46981 * 70.90824 * 3 2 1 5 5 N 1.46904 * 109.47214 * 181.29812 * 4 3 2 6 6 C 1.46902 * 111.00197 * 196.26933 * 5 4 3 7 7 C 1.50701 * 109.46874 * 66.04765 * 6 5 4 8 8 H 1.07997 * 120.00012 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99909 * 179.72354 * 7 6 5 10 10 N 1.31517 * 120.00148 * 0.27619 * 9 7 6 11 11 Si 1.86799 * 120.00239 * 180.27439 * 9 7 6 12 12 H 1.48506 * 109.46864 * 90.00085 * 11 9 7 13 13 H 1.48502 * 109.47455 * 209.99861 * 11 9 7 14 14 H 1.48495 * 109.47095 * 330.00335 * 11 9 7 15 15 C 1.46904 * 110.99652 * 72.31746 * 5 4 3 16 16 C 1.53001 * 109.46862 * 199.57320 * 15 5 4 17 17 H 1.08998 * 110.26593 * 303.55948 * 16 15 5 18 18 C 1.54349 * 110.30282 * 181.38319 * 16 15 5 19 19 C 1.54342 * 102.39144 * 267.42549 * 18 16 15 20 20 C 1.51373 * 105.16879 * 333.64884 * 19 18 16 21 21 C 1.38497 * 130.39064 * 197.18754 * 20 19 18 22 22 C 1.38105 * 120.21573 * 180.02562 * 21 20 19 23 23 C 1.38262 * 119.93188 * 359.97438 * 22 21 20 24 24 C 1.38101 * 119.93379 * 359.97438 * 23 22 21 25 25 C 1.38213 * 109.75738 * 17.19372 * 20 19 18 26 26 H 1.08995 * 109.47466 * 310.90926 * 3 2 1 27 27 H 1.09002 * 109.46764 * 190.90534 * 3 2 1 28 28 H 1.09005 * 109.47233 * 61.30006 * 4 3 2 29 29 H 1.08994 * 109.47568 * 301.30328 * 4 3 2 30 30 H 1.09001 * 109.47118 * 306.05035 * 6 5 4 31 31 H 1.08999 * 109.46748 * 186.04849 * 6 5 4 32 32 H 0.96992 * 120.00449 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.46940 * 319.57343 * 15 5 4 34 34 H 1.08999 * 109.47284 * 79.56940 * 15 5 4 35 35 H 1.09006 * 110.82197 * 25.64399 * 18 16 15 36 36 H 1.08998 * 110.82390 * 149.19533 * 18 16 15 37 37 H 1.09000 * 110.30502 * 214.73113 * 19 18 16 38 38 H 1.08997 * 110.38991 * 92.61370 * 19 18 16 39 39 H 1.08001 * 119.89485 * 359.97438 * 21 20 19 40 40 H 1.07996 * 120.03353 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.03024 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.89005 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4709 -1.3631 5 7 4.5869 -0.5000 -1.3530 6 6 5.1215 -0.5677 -2.7196 7 6 4.7932 0.7083 -3.4512 8 1 4.2429 1.4913 -2.9509 9 6 5.2009 0.8786 -4.7573 10 7 5.8716 -0.0747 -5.3664 11 14 4.8007 2.4633 -5.6616 12 1 5.8972 3.4428 -5.4530 13 1 4.6573 2.1825 -7.1128 14 1 3.5294 3.0245 -5.1381 15 6 5.0857 -1.6149 -0.5368 16 6 6.5402 -1.3484 -0.1440 17 1 7.1491 -1.1915 -1.0344 18 6 7.0950 -2.5255 0.6861 19 6 6.8090 -2.0736 2.1339 20 6 6.7800 -0.5611 2.0783 21 6 6.8807 0.3763 3.0929 22 6 6.8268 1.7250 2.8008 23 6 6.6724 2.1417 1.4915 24 6 6.5729 1.2085 0.4785 25 6 6.6255 -0.1446 0.7696 26 1 2.9717 -0.6721 0.7766 27 1 2.9708 1.0100 0.1944 28 1 2.7737 0.2149 -2.1372 29 1 2.7364 -1.4711 -1.5679 30 1 4.6740 -1.4123 -3.2435 31 1 6.2032 -0.6961 -2.6806 32 1 6.1587 0.0452 -6.2851 33 1 4.4774 -1.7070 0.3630 34 1 5.0278 -2.5397 -1.1107 35 1 6.5615 -3.4477 0.4556 36 1 8.1659 -2.6447 0.5218 37 1 7.6027 -2.4123 2.7997 38 1 5.8456 -2.4583 2.4685 39 1 7.0008 0.0515 4.1158 40 1 6.9052 2.4535 3.5942 41 1 6.6305 3.1960 1.2612 42 1 6.4519 1.5347 -0.5440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780302629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = 44.957268 kcal Electronic energy + Delta-G solvation = -22308.953495 eV Core-core repulsion = 19253.233220 eV Total energy + Delta-G solvation = -3055.720275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.01023 -37.48207 -36.23968 -35.21602 -32.71760 -31.53275 -30.53500 -28.90429 -28.16619 -26.44308 -24.08067 -23.04090 -22.30457 -20.72051 -20.35823 -19.40071 -17.28665 -16.52532 -15.99792 -15.41423 -15.06199 -14.77340 -14.57862 -14.50393 -14.33586 -13.65224 -13.28722 -13.07662 -12.86640 -12.70086 -12.34001 -12.29047 -12.04672 -11.97145 -11.81009 -11.55440 -11.32370 -11.06154 -10.84184 -10.77751 -10.72963 -10.69425 -10.40245 -10.32847 -10.12156 -9.74988 -9.24434 -8.48327 -8.40997 -8.17440 -7.36793 -6.08178 -4.09623 1.69888 1.79614 2.97527 3.01361 3.29049 3.36196 3.38891 4.12566 4.17806 4.39775 4.63364 4.78885 5.01064 5.16960 5.27964 5.29622 5.34663 5.38660 5.43670 5.49951 5.64296 5.73532 5.81266 5.83248 5.88178 5.89977 6.04804 6.13493 6.18826 6.22035 6.28847 6.37110 6.53662 6.55360 6.61293 6.78694 6.93940 7.13515 7.19217 7.27397 7.40305 7.72731 7.79323 7.99870 8.09590 8.45225 8.98151 9.55377 11.02439 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.005887 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.374521 B = 4755.348674 C = 5541.175247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.219 3.781 3 C -0.027 4.027 4 C 0.067 3.933 5 N -0.529 5.529 6 C 0.194 3.806 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.064 3.936 16 C -0.048 4.048 17 H 0.087 0.913 18 C -0.118 4.118 19 C -0.078 4.078 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.076 4.076 25 C -0.058 4.058 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.028 0.972 30 H -0.009 1.009 31 H 0.036 0.964 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.597 -2.220 14.809 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.099 4.099 3 C -0.067 4.067 4 C -0.062 4.062 5 N -0.253 5.253 6 C 0.069 3.931 7 C -0.548 4.548 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.064 4.064 16 C -0.067 4.067 17 H 0.105 0.895 18 C -0.156 4.156 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.094 4.094 25 C -0.058 4.058 26 H 0.117 0.883 27 H 0.132 0.868 28 H 0.114 0.886 29 H 0.046 0.954 30 H 0.009 0.991 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.143 -1.833 14.832 15.098 hybrid contribution 0.036 0.182 -0.951 0.969 sum 2.179 -1.650 13.881 14.147 Atomic orbital electron populations 1.81156 1.13270 1.09757 1.09317 1.29414 0.95475 0.92444 0.92536 1.19430 0.80336 1.05639 1.01329 1.21857 0.89780 1.00102 0.94504 1.62000 1.05415 1.41603 1.16299 1.19760 0.95553 0.96516 0.81221 1.21142 1.35507 1.01696 0.96436 0.91737 1.24954 0.95254 0.96577 0.97572 1.69942 1.38354 1.32725 1.12577 0.86572 0.78818 0.83628 0.78854 1.20625 1.21410 1.19865 1.22062 0.94294 0.92998 0.97071 1.20707 0.97118 0.91192 0.97674 0.89476 1.22337 1.01144 0.98021 0.94049 1.21000 1.01554 0.91368 0.97590 1.20589 1.01072 0.95190 0.94083 1.20440 1.02816 0.92575 0.97919 1.20910 1.02056 0.95221 0.96571 1.21057 1.01393 0.99338 0.92804 1.20891 0.96615 0.91607 1.00290 1.20336 0.97608 0.94057 0.93783 0.88264 0.86815 0.88628 0.95397 0.99105 0.94646 0.92904 0.91989 0.94938 0.90744 0.91100 0.91469 0.90754 0.87291 0.86864 0.86496 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.88 18.54 42.15 0.78 -7.09 16 2 C 0.22 3.25 15.43 -20.76 -0.32 2.93 16 3 C -0.03 -0.35 5.79 -29.52 -0.17 -0.52 16 4 C 0.07 1.10 4.76 -3.82 -0.02 1.09 16 5 N -0.53 -9.38 3.99 -236.06 -0.94 -10.32 16 6 C 0.19 4.44 4.55 -4.97 -0.02 4.42 16 7 C -0.51 -12.93 8.28 -34.44 -0.29 -13.22 16 8 H 0.06 1.61 7.26 -52.49 -0.38 1.23 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -25.27 13.29 55.43 0.74 -24.53 16 11 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.06 0.96 4.15 -3.82 -0.02 0.95 16 16 C -0.05 -0.70 2.94 -90.74 -0.27 -0.96 16 17 H 0.09 1.47 6.74 -51.93 -0.35 1.12 16 18 C -0.12 -1.35 6.60 -25.32 -0.17 -1.52 16 19 C -0.08 -0.84 6.76 -26.85 -0.18 -1.02 16 20 C -0.11 -1.41 6.14 -104.21 -0.64 -2.05 16 21 C -0.12 -1.45 10.04 -39.53 -0.40 -1.85 16 22 C -0.13 -1.57 10.05 -39.62 -0.40 -1.97 16 23 C -0.13 -1.71 10.05 -39.62 -0.40 -2.10 16 24 C -0.08 -1.16 9.87 -39.54 -0.39 -1.55 16 25 C -0.06 -0.84 5.25 -104.21 -0.55 -1.39 16 26 H 0.10 1.12 6.52 -51.93 -0.34 0.78 16 27 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.10 1.79 6.59 -51.93 -0.34 1.45 16 29 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 30 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 31 H 0.04 0.87 6.60 -51.93 -0.34 0.53 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.06 0.81 6.25 -51.93 -0.32 0.49 16 34 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 35 H 0.07 0.77 7.90 -51.93 -0.41 0.36 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 347.92 15.07 5.24 5.24 Total: -1.00 -28.53 347.92 -9.78 -38.32 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.26 Total: -0.01 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -4.32 Total: -17.32 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.58 Total: -41.95 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.53 -9.78 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780302629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.272 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds