Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46981 * 70.90824 * 3 2 1 5 5 N 1.46904 * 109.47214 * 181.29812 * 4 3 2 6 6 C 1.46902 * 111.00197 * 196.26933 * 5 4 3 7 7 C 1.50701 * 109.46874 * 66.04765 * 6 5 4 8 8 H 1.07997 * 120.00012 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99909 * 179.72354 * 7 6 5 10 10 N 1.31517 * 120.00148 * 0.27619 * 9 7 6 11 11 Si 1.86799 * 120.00239 * 180.27439 * 9 7 6 12 12 H 1.48506 * 109.46864 * 90.00085 * 11 9 7 13 13 H 1.48502 * 109.47455 * 209.99861 * 11 9 7 14 14 H 1.48495 * 109.47095 * 330.00335 * 11 9 7 15 15 C 1.46904 * 110.99652 * 72.31746 * 5 4 3 16 16 C 1.53001 * 109.46862 * 199.57320 * 15 5 4 17 17 H 1.08998 * 110.26593 * 303.55948 * 16 15 5 18 18 C 1.54349 * 110.30282 * 181.38319 * 16 15 5 19 19 C 1.54342 * 102.39144 * 267.42549 * 18 16 15 20 20 C 1.51373 * 105.16879 * 333.64884 * 19 18 16 21 21 C 1.38497 * 130.39064 * 197.18754 * 20 19 18 22 22 C 1.38105 * 120.21573 * 180.02562 * 21 20 19 23 23 C 1.38262 * 119.93188 * 359.97438 * 22 21 20 24 24 C 1.38101 * 119.93379 * 359.97438 * 23 22 21 25 25 C 1.38213 * 109.75738 * 17.19372 * 20 19 18 26 26 H 1.08995 * 109.47466 * 310.90926 * 3 2 1 27 27 H 1.09002 * 109.46764 * 190.90534 * 3 2 1 28 28 H 1.09005 * 109.47233 * 61.30006 * 4 3 2 29 29 H 1.08994 * 109.47568 * 301.30328 * 4 3 2 30 30 H 1.09001 * 109.47118 * 306.05035 * 6 5 4 31 31 H 1.08999 * 109.46748 * 186.04849 * 6 5 4 32 32 H 0.96992 * 120.00449 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.46940 * 319.57343 * 15 5 4 34 34 H 1.08999 * 109.47284 * 79.56940 * 15 5 4 35 35 H 1.09006 * 110.82197 * 25.64399 * 18 16 15 36 36 H 1.08998 * 110.82390 * 149.19533 * 18 16 15 37 37 H 1.09000 * 110.30502 * 214.73113 * 19 18 16 38 38 H 1.08997 * 110.38991 * 92.61370 * 19 18 16 39 39 H 1.08001 * 119.89485 * 359.97438 * 21 20 19 40 40 H 1.07996 * 120.03353 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.03024 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.89005 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.4709 -1.3631 5 7 4.5869 -0.5000 -1.3530 6 6 5.1215 -0.5677 -2.7196 7 6 4.7932 0.7083 -3.4512 8 1 4.2429 1.4913 -2.9509 9 6 5.2009 0.8786 -4.7573 10 7 5.8716 -0.0747 -5.3664 11 14 4.8007 2.4633 -5.6616 12 1 5.8972 3.4428 -5.4530 13 1 4.6573 2.1825 -7.1128 14 1 3.5294 3.0245 -5.1381 15 6 5.0857 -1.6149 -0.5368 16 6 6.5402 -1.3484 -0.1440 17 1 7.1491 -1.1915 -1.0344 18 6 7.0950 -2.5255 0.6861 19 6 6.8090 -2.0736 2.1339 20 6 6.7800 -0.5611 2.0783 21 6 6.8807 0.3763 3.0929 22 6 6.8268 1.7250 2.8008 23 6 6.6724 2.1417 1.4915 24 6 6.5729 1.2085 0.4785 25 6 6.6255 -0.1446 0.7696 26 1 2.9717 -0.6721 0.7766 27 1 2.9708 1.0100 0.1944 28 1 2.7737 0.2149 -2.1372 29 1 2.7364 -1.4711 -1.5679 30 1 4.6740 -1.4123 -3.2435 31 1 6.2032 -0.6961 -2.6806 32 1 6.1587 0.0452 -6.2851 33 1 4.4774 -1.7070 0.3630 34 1 5.0278 -2.5397 -1.1107 35 1 6.5615 -3.4477 0.4556 36 1 8.1659 -2.6447 0.5218 37 1 7.6027 -2.4123 2.7997 38 1 5.8456 -2.4583 2.4685 39 1 7.0008 0.0515 4.1158 40 1 6.9052 2.4535 3.5942 41 1 6.6305 3.1960 1.2612 42 1 6.4519 1.5347 -0.5440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780302629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = 31.084399 kcal Electronic energy + Delta-G solvation = -22309.555067 eV Core-core repulsion = 19253.233220 eV Total energy + Delta-G solvation = -3056.321848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05360 -38.82947 -37.50044 -36.34570 -34.67860 -32.67732 -31.78336 -30.08360 -29.38576 -27.96491 -25.27449 -24.81621 -23.30054 -21.99912 -21.40943 -20.61549 -18.67159 -18.32072 -17.07509 -16.70063 -16.50187 -16.07782 -15.86724 -15.65832 -15.45726 -15.08744 -14.66191 -14.28863 -14.06184 -13.93515 -13.80848 -13.54306 -13.34543 -13.23900 -13.18629 -12.87191 -12.65197 -12.54653 -12.29608 -12.24313 -11.96376 -11.88897 -11.75899 -11.56550 -11.37000 -11.22766 -11.04559 -10.54073 -9.43177 -9.20666 -8.88743 -8.15173 -6.22229 0.70168 0.77346 1.42530 1.43551 1.53065 1.73990 1.81053 2.42816 2.92716 3.11419 3.19277 3.53173 3.72761 3.91656 4.12044 4.19376 4.30354 4.37203 4.40544 4.49668 4.52596 4.66607 4.69729 4.76046 4.81732 4.93220 5.00681 5.04651 5.10749 5.14245 5.21212 5.26028 5.33945 5.38693 5.41132 5.48590 5.56155 5.72760 5.81241 5.91210 6.08912 6.14879 6.37822 6.41030 6.58044 6.72946 6.95230 7.46955 8.95622 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011691 B = 0.005887 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.374521 B = 4755.348674 C = 5541.175247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.242 3.758 3 C -0.008 4.008 4 C 0.068 3.932 5 N -0.525 5.525 6 C 0.213 3.787 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.005 3.995 10 N -0.934 5.934 11 Si 0.955 3.045 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.266 1.266 15 C 0.066 3.934 16 C -0.050 4.050 17 H 0.047 0.953 18 C -0.112 4.112 19 C -0.072 4.072 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.099 4.099 25 C -0.078 4.078 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.067 0.933 29 H 0.029 0.971 30 H -0.041 1.041 31 H 0.011 0.989 32 H 0.261 0.739 33 H 0.092 0.908 34 H 0.026 0.974 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.126 0.874 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -2.076 17.935 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.075 4.075 3 C -0.049 4.049 4 C -0.062 4.062 5 N -0.248 5.248 6 C 0.087 3.913 7 C -0.550 4.550 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.575 5.575 11 Si 0.781 3.219 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.062 4.062 16 C -0.069 4.069 17 H 0.066 0.934 18 C -0.150 4.150 19 C -0.109 4.109 20 C -0.109 4.109 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.153 4.153 24 C -0.117 4.117 25 C -0.078 4.078 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.086 0.914 29 H 0.048 0.952 30 H -0.023 1.023 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.044 0.956 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.144 0.856 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.993 -1.684 17.980 18.168 hybrid contribution 0.126 0.134 -1.884 1.893 sum 2.118 -1.550 16.096 16.309 Atomic orbital electron populations 1.81186 1.14511 1.11229 1.10548 1.29551 0.95469 0.91152 0.91321 1.19331 0.79022 1.06835 0.99677 1.21793 0.88773 0.99669 0.95995 1.61893 1.06277 1.43277 1.13393 1.19326 0.93957 0.94311 0.83675 1.21492 1.34479 1.02404 0.96643 0.91543 1.25754 0.95363 0.99527 0.98663 1.70067 1.39898 1.34702 1.12853 0.85596 0.78861 0.80042 0.77417 1.20083 1.21457 1.19048 1.22161 0.95261 0.91450 0.97326 1.20683 0.96120 0.93187 0.96876 0.93448 1.22333 1.01267 0.97128 0.94305 1.21029 1.03266 0.89676 0.96883 1.20867 1.00153 0.96676 0.93197 1.20805 1.01420 0.92316 0.99079 1.21237 1.00590 0.96132 0.96392 1.21198 1.01452 0.99486 0.93197 1.20749 0.98956 0.92769 0.99234 1.20355 0.99034 0.93515 0.94878 0.85294 0.85762 0.91416 0.95226 1.02293 0.97115 0.93013 0.88942 0.95619 0.89360 0.90982 0.89437 0.88948 0.84433 0.84143 0.85615 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.53 18.54 20.01 0.37 -16.16 16 2 C 0.24 6.77 15.43 89.44 1.38 8.15 16 3 C -0.01 -0.20 5.79 28.79 0.17 -0.04 16 4 C 0.07 2.20 4.76 86.30 0.41 2.61 16 5 N -0.52 -19.02 3.99 -900.77 -3.60 -22.62 16 6 C 0.21 10.33 4.55 85.56 0.39 10.72 16 7 C -0.51 -26.99 8.28 25.60 0.21 -26.78 16 8 H 0.07 3.41 7.26 -2.91 -0.02 3.39 16 9 C 0.00 0.26 5.46 84.65 0.46 0.73 16 10 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 11 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 C 0.07 1.95 4.15 86.30 0.36 2.30 16 16 C -0.05 -1.45 2.94 -10.87 -0.03 -1.48 16 17 H 0.05 1.73 6.74 -2.39 -0.02 1.71 16 18 C -0.11 -2.38 6.60 31.51 0.21 -2.17 16 19 C -0.07 -1.27 6.76 30.52 0.21 -1.06 16 20 C -0.11 -2.49 6.14 -19.59 -0.12 -2.61 16 21 C -0.12 -2.40 10.04 22.30 0.22 -2.18 16 22 C -0.13 -2.64 10.05 22.24 0.22 -2.42 16 23 C -0.14 -3.45 10.05 22.24 0.22 -3.23 16 24 C -0.10 -3.06 9.87 22.30 0.22 -2.84 16 25 C -0.08 -2.22 5.25 -19.60 -0.10 -2.32 16 26 H 0.13 2.40 6.52 -2.39 -0.02 2.39 16 27 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.07 2.59 6.59 -2.38 -0.02 2.57 16 29 H 0.03 0.95 8.05 -2.39 -0.02 0.93 16 30 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 31 H 0.01 0.57 6.60 -2.39 -0.02 0.56 16 32 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.09 2.17 6.25 -2.39 -0.01 2.15 16 34 H 0.03 0.80 8.00 -2.39 -0.02 0.78 16 35 H 0.09 1.62 7.90 -2.38 -0.02 1.60 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.10 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -64.56 347.92 4.52 -60.05 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.00 Total: 10.34 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 4.43 Total: -22.63 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -2.94 Total: -93.24 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -64.56 4.52 -60.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780302629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.130 kcal (2) G-P(sol) polarization free energy of solvation -64.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds