Wall clock time and date at job start Tue Mar 31 2020 06:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47118 * 82.06417 * 3 2 1 5 5 N 1.46902 * 109.47117 * 181.13235 * 4 3 2 6 6 C 1.46898 * 111.00304 * 62.53757 * 5 4 3 7 7 C 1.50697 * 109.46892 * 66.04782 * 6 5 4 8 8 H 1.08003 * 120.00258 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00021 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99789 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00154 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47165 * 90.00118 * 11 9 7 13 13 H 1.48504 * 109.46996 * 209.99968 * 11 9 7 14 14 H 1.48494 * 109.47182 * 330.00048 * 11 9 7 15 15 C 1.46907 * 110.99425 * 298.58293 * 5 4 3 16 16 C 1.52995 * 109.47472 * 288.24716 * 15 5 4 17 17 H 1.09003 * 110.26919 * 54.89817 * 16 15 5 18 18 C 1.54347 * 110.30371 * 176.97345 * 16 15 5 19 19 C 1.54339 * 102.38887 * 92.57741 * 18 16 15 20 20 C 1.51369 * 105.17505 * 26.34749 * 19 18 16 21 21 C 1.38495 * 130.39379 * 162.80553 * 20 19 18 22 22 C 1.38110 * 120.21578 * 179.97438 * 21 20 19 23 23 C 1.38254 * 119.93207 * 0.02562 * 22 21 20 24 24 C 1.38103 * 119.93740 * 0.02562 * 23 22 21 25 25 C 1.38219 * 109.75821 * 342.81103 * 20 19 18 26 26 H 1.09000 * 109.47257 * 322.06569 * 3 2 1 27 27 H 1.09000 * 109.47104 * 202.06170 * 3 2 1 28 28 H 1.08997 * 109.47338 * 61.12489 * 4 3 2 29 29 H 1.09005 * 109.47128 * 301.12632 * 4 3 2 30 30 H 1.09001 * 109.47024 * 186.05019 * 6 5 4 31 31 H 1.08995 * 109.47139 * 306.04818 * 6 5 4 32 32 H 0.97005 * 120.00321 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47196 * 48.25034 * 15 5 4 34 34 H 1.09001 * 109.46957 * 168.24695 * 15 5 4 35 35 H 1.09004 * 110.81712 * 210.80106 * 18 16 15 36 36 H 1.08998 * 110.82091 * 334.34802 * 18 16 15 37 37 H 1.09005 * 110.30261 * 145.27428 * 19 18 16 38 38 H 1.09001 * 110.30308 * 267.42022 * 19 18 16 39 39 H 1.07998 * 119.89498 * 359.97438 * 21 20 19 40 40 H 1.07990 * 120.03029 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.03214 * 180.02562 * 23 22 21 42 42 H 1.07992 * 119.89534 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.1983 -1.4287 5 7 4.5869 -0.2247 -1.4250 6 6 5.0911 -1.3571 -0.6367 7 6 4.7110 -2.6489 -1.3133 8 1 4.1512 -2.6306 -2.2367 9 6 5.0787 -3.8543 -0.7539 10 7 5.7608 -3.8766 0.3703 11 14 4.6082 -5.4555 -1.5929 12 1 5.6805 -5.8514 -2.5408 13 1 4.4348 -6.5180 -0.5699 14 1 3.3353 -5.2702 -2.3348 15 6 5.1349 1.0458 -0.9316 16 6 4.9183 2.1369 -1.9819 17 1 3.8633 2.2002 -2.2486 18 6 5.4193 3.4973 -1.4522 19 6 6.8730 3.5388 -1.9689 20 6 6.8800 2.6626 -3.2032 21 6 7.7966 2.5770 -4.2379 22 6 7.5920 1.6893 -5.2760 23 6 6.4686 0.8835 -5.2833 24 6 5.5529 0.9682 -4.2530 25 6 5.7568 1.8571 -3.2107 26 1 2.9717 -0.8097 0.6318 27 1 2.9709 0.9532 0.3860 28 1 2.7710 0.6227 -2.0561 29 1 2.7387 -1.1415 -1.8219 30 1 6.1765 -1.2923 -0.5608 31 1 4.6547 -1.3277 0.3616 32 1 6.0192 -4.7246 0.7641 33 1 4.6289 1.3254 -0.0075 34 1 6.2021 0.9316 -0.7411 35 1 4.8350 4.3158 -1.8728 36 1 5.3943 3.5219 -0.3628 37 1 7.1532 4.5598 -2.2283 38 1 7.5532 3.1386 -1.2171 39 1 8.6742 3.2064 -4.2331 40 1 8.3084 1.6253 -6.0815 41 1 6.3072 0.1885 -6.0941 42 1 4.6754 0.3388 -4.2596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780302631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:01 Heat of formation + Delta-G solvation = 48.805424 kcal Electronic energy + Delta-G solvation = -22212.044979 eV Core-core repulsion = 19156.491573 eV Total energy + Delta-G solvation = -3055.553406 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08627 -37.79621 -36.10713 -35.28198 -32.68564 -31.34425 -30.25924 -28.99701 -28.27179 -26.29944 -24.62598 -23.17412 -22.36417 -20.66512 -20.28850 -19.34346 -17.43422 -16.34242 -16.14063 -15.57508 -14.95908 -14.85715 -14.73798 -14.50268 -14.08940 -13.68381 -13.56322 -12.96831 -12.88513 -12.76764 -12.42807 -12.19081 -12.02772 -11.92030 -11.57862 -11.45698 -11.42021 -11.18347 -10.98038 -10.89069 -10.64408 -10.61831 -10.50148 -10.40343 -10.07083 -9.80585 -9.27823 -8.47981 -8.43438 -8.19800 -7.34344 -6.08009 -4.09040 1.68478 1.76790 3.07907 3.10605 3.29942 3.36784 3.39524 4.09939 4.28865 4.40398 4.56614 4.71376 4.94293 5.08547 5.27796 5.28478 5.30524 5.36774 5.42503 5.52091 5.57481 5.70417 5.73880 5.77405 5.82090 5.86065 5.95651 6.09761 6.10537 6.14750 6.28570 6.31368 6.43921 6.53479 6.60549 6.76260 6.87920 7.05546 7.19135 7.22078 7.35910 7.73301 7.86158 8.00787 8.08448 8.44724 8.98148 9.55893 11.02481 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.005886 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.251696 B = 4755.717821 C = 6140.856467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.225 3.775 3 C -0.075 4.075 4 C 0.070 3.930 5 N -0.522 5.522 6 C 0.189 3.811 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.059 3.941 16 C -0.049 4.049 17 H 0.078 0.922 18 C -0.117 4.117 19 C -0.079 4.079 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.076 4.076 25 C -0.063 4.063 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.031 0.969 31 H -0.001 1.001 32 H 0.261 0.739 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 14.355 -5.187 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.061 4.061 5 N -0.244 5.244 6 C 0.064 3.936 7 C -0.545 4.545 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.069 4.069 16 C -0.068 4.068 17 H 0.096 0.904 18 C -0.155 4.155 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.094 4.094 25 C -0.063 4.063 26 H 0.139 0.861 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.017 0.983 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.320 14.148 -5.539 15.251 hybrid contribution 0.184 -1.057 0.475 1.173 sum 1.504 13.092 -5.065 14.118 Atomic orbital electron populations 1.81143 1.13228 1.09990 1.09700 1.29307 0.95300 0.92245 0.92425 1.20255 0.81455 1.05405 1.04544 1.22104 0.89573 1.02947 0.91435 1.62325 1.04436 1.02574 1.55060 1.19825 0.95774 0.86888 0.91081 1.21120 1.35080 0.89809 1.08539 0.91836 1.24942 0.95255 0.99188 0.94976 1.69938 1.38678 1.26283 1.18771 0.86571 0.78931 0.83217 0.79161 1.20662 1.21392 1.19866 1.22144 1.00547 0.90124 0.94109 1.20748 0.99055 0.94009 0.92950 0.90388 1.22337 0.95525 0.96836 1.00835 1.21003 0.97567 0.98415 0.94613 1.20564 0.95628 0.98582 0.95880 1.20465 0.98821 0.99945 0.94319 1.20919 0.97948 0.97107 0.98546 1.21030 0.94867 0.99449 0.99007 1.20684 0.99664 0.96575 0.92467 1.20304 0.95757 0.95510 0.94778 0.86107 0.88196 0.91852 0.89071 0.95074 0.98332 0.92912 0.94609 0.91031 0.91215 0.90579 0.91393 0.90441 0.87115 0.86687 0.86429 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.28 18.54 42.15 0.78 -7.49 16 2 C 0.22 3.54 15.43 -20.76 -0.32 3.22 16 3 C -0.07 -1.07 5.07 -29.52 -0.15 -1.22 16 4 C 0.07 1.10 4.97 -3.82 -0.02 1.08 16 5 N -0.52 -9.24 4.36 -236.07 -1.03 -10.27 16 6 C 0.19 4.26 4.51 -4.98 -0.02 4.24 16 7 C -0.51 -12.94 8.48 -34.44 -0.29 -13.23 16 8 H 0.06 1.62 7.12 -52.48 -0.37 1.24 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -25.19 13.29 55.43 0.74 -24.45 16 11 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 C 0.06 0.87 4.13 -3.82 -0.02 0.86 16 16 C -0.05 -0.63 2.90 -90.74 -0.26 -0.89 16 17 H 0.08 0.97 6.61 -51.93 -0.34 0.63 16 18 C -0.12 -1.21 6.60 -25.32 -0.17 -1.38 16 19 C -0.08 -0.86 6.76 -26.85 -0.18 -1.04 16 20 C -0.11 -1.43 6.14 -104.21 -0.64 -2.07 16 21 C -0.12 -1.52 10.04 -39.53 -0.40 -1.91 16 22 C -0.13 -1.64 10.05 -39.62 -0.40 -2.04 16 23 C -0.13 -1.75 10.05 -39.62 -0.40 -2.15 16 24 C -0.08 -1.15 9.93 -39.54 -0.39 -1.54 16 25 C -0.06 -0.92 5.27 -104.20 -0.55 -1.47 16 26 H 0.12 1.95 6.28 -51.93 -0.33 1.63 16 27 H 0.10 1.18 6.26 -51.93 -0.32 0.85 16 28 H 0.06 0.88 6.57 -51.93 -0.34 0.53 16 29 H 0.09 1.64 6.79 -51.93 -0.35 1.29 16 30 H 0.03 0.79 7.86 -51.93 -0.41 0.38 16 31 H 0.00 -0.02 6.06 -51.93 -0.31 -0.34 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.04 0.47 5.82 -51.93 -0.30 0.17 16 34 H 0.07 1.16 7.81 -51.93 -0.41 0.76 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.70 7.89 -51.93 -0.41 0.29 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -28.98 342.87 -9.67 -38.65 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.00 Total: 0.60 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -4.30 Total: -18.09 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.49 Total: -42.22 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.98 -9.67 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780302631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.454 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds