Wall clock time and date at job start Tue Mar 31 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47118 * 82.06417 * 3 2 1 5 5 N 1.46902 * 109.47117 * 181.13235 * 4 3 2 6 6 C 1.46898 * 111.00304 * 62.53757 * 5 4 3 7 7 C 1.50697 * 109.46892 * 66.04782 * 6 5 4 8 8 H 1.08003 * 120.00258 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00021 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99789 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00154 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47165 * 90.00118 * 11 9 7 13 13 H 1.48504 * 109.46996 * 209.99968 * 11 9 7 14 14 H 1.48494 * 109.47182 * 330.00048 * 11 9 7 15 15 C 1.46907 * 110.99425 * 298.58293 * 5 4 3 16 16 C 1.52995 * 109.47472 * 288.24716 * 15 5 4 17 17 H 1.09003 * 110.26919 * 54.89817 * 16 15 5 18 18 C 1.54347 * 110.30371 * 176.97345 * 16 15 5 19 19 C 1.54339 * 102.38887 * 92.57741 * 18 16 15 20 20 C 1.51369 * 105.17505 * 26.34749 * 19 18 16 21 21 C 1.38495 * 130.39379 * 162.80553 * 20 19 18 22 22 C 1.38110 * 120.21578 * 179.97438 * 21 20 19 23 23 C 1.38254 * 119.93207 * 0.02562 * 22 21 20 24 24 C 1.38103 * 119.93740 * 0.02562 * 23 22 21 25 25 C 1.38219 * 109.75821 * 342.81103 * 20 19 18 26 26 H 1.09000 * 109.47257 * 322.06569 * 3 2 1 27 27 H 1.09000 * 109.47104 * 202.06170 * 3 2 1 28 28 H 1.08997 * 109.47338 * 61.12489 * 4 3 2 29 29 H 1.09005 * 109.47128 * 301.12632 * 4 3 2 30 30 H 1.09001 * 109.47024 * 186.05019 * 6 5 4 31 31 H 1.08995 * 109.47139 * 306.04818 * 6 5 4 32 32 H 0.97005 * 120.00321 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.47196 * 48.25034 * 15 5 4 34 34 H 1.09001 * 109.46957 * 168.24695 * 15 5 4 35 35 H 1.09004 * 110.81712 * 210.80106 * 18 16 15 36 36 H 1.08998 * 110.82091 * 334.34802 * 18 16 15 37 37 H 1.09005 * 110.30261 * 145.27428 * 19 18 16 38 38 H 1.09001 * 110.30308 * 267.42022 * 19 18 16 39 39 H 1.07998 * 119.89498 * 359.97438 * 21 20 19 40 40 H 1.07990 * 120.03029 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.03214 * 180.02562 * 23 22 21 42 42 H 1.07992 * 119.89534 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.1983 -1.4287 5 7 4.5869 -0.2247 -1.4250 6 6 5.0911 -1.3571 -0.6367 7 6 4.7110 -2.6489 -1.3133 8 1 4.1512 -2.6306 -2.2367 9 6 5.0787 -3.8543 -0.7539 10 7 5.7608 -3.8766 0.3703 11 14 4.6082 -5.4555 -1.5929 12 1 5.6805 -5.8514 -2.5408 13 1 4.4348 -6.5180 -0.5699 14 1 3.3353 -5.2702 -2.3348 15 6 5.1349 1.0458 -0.9316 16 6 4.9183 2.1369 -1.9819 17 1 3.8633 2.2002 -2.2486 18 6 5.4193 3.4973 -1.4522 19 6 6.8730 3.5388 -1.9689 20 6 6.8800 2.6626 -3.2032 21 6 7.7966 2.5770 -4.2379 22 6 7.5920 1.6893 -5.2760 23 6 6.4686 0.8835 -5.2833 24 6 5.5529 0.9682 -4.2530 25 6 5.7568 1.8571 -3.2107 26 1 2.9717 -0.8097 0.6318 27 1 2.9709 0.9532 0.3860 28 1 2.7710 0.6227 -2.0561 29 1 2.7387 -1.1415 -1.8219 30 1 6.1765 -1.2923 -0.5608 31 1 4.6547 -1.3277 0.3616 32 1 6.0192 -4.7246 0.7641 33 1 4.6289 1.3254 -0.0075 34 1 6.2021 0.9316 -0.7411 35 1 4.8350 4.3158 -1.8728 36 1 5.3943 3.5219 -0.3628 37 1 7.1532 4.5598 -2.2283 38 1 7.5532 3.1386 -1.2171 39 1 8.6742 3.2064 -4.2331 40 1 8.3084 1.6253 -6.0815 41 1 6.3072 0.1885 -6.0941 42 1 4.6754 0.3388 -4.2596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780302631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:00 Heat of formation + Delta-G solvation = 34.403220 kcal Electronic energy + Delta-G solvation = -22212.669506 eV Core-core repulsion = 19156.491573 eV Total energy + Delta-G solvation = -3056.177933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.10900 -39.12703 -37.39605 -36.39447 -34.63081 -32.41438 -31.59959 -30.18370 -29.44112 -27.81066 -25.88220 -24.76919 -23.35794 -21.82781 -21.47441 -20.48924 -18.78214 -18.21348 -17.26552 -16.77080 -16.48690 -16.00741 -15.96510 -15.64670 -15.32596 -15.12001 -14.85904 -14.35176 -14.08857 -13.89027 -13.64315 -13.47967 -13.41086 -13.17545 -12.95222 -12.84672 -12.73770 -12.54847 -12.43472 -12.33313 -11.95400 -11.85372 -11.67625 -11.64804 -11.45103 -11.15746 -11.05546 -10.51862 -9.48685 -9.24160 -8.78209 -8.12909 -6.18816 0.65319 0.71609 1.42223 1.44231 1.52751 1.78513 1.82032 2.44051 3.02203 3.05297 3.21785 3.43752 3.70491 3.86451 4.14897 4.23713 4.28242 4.32637 4.35143 4.43795 4.51611 4.57513 4.69133 4.73979 4.80329 4.86578 4.94429 5.02941 5.11126 5.17206 5.21997 5.27255 5.35140 5.42709 5.43742 5.51096 5.53523 5.74598 5.76281 5.83283 5.99832 6.17420 6.34047 6.43527 6.61568 6.77079 6.98121 7.49930 8.96886 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.005886 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.251696 B = 4755.717821 C = 6140.856467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.246 3.754 3 C -0.062 4.062 4 C 0.074 3.926 5 N -0.528 5.528 6 C 0.205 3.795 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.948 3.052 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.062 3.938 16 C -0.045 4.045 17 H 0.084 0.916 18 C -0.109 4.109 19 C -0.078 4.078 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.100 4.100 25 C -0.084 4.084 26 H 0.104 0.896 27 H 0.135 0.865 28 H 0.089 0.911 29 H 0.064 0.936 30 H -0.002 1.002 31 H -0.008 1.008 32 H 0.261 0.739 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 16.198 -5.418 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.071 4.071 3 C -0.104 4.104 4 C -0.057 4.057 5 N -0.250 5.250 6 C 0.079 3.921 7 C -0.549 4.549 8 H 0.078 0.922 9 C -0.190 4.190 10 N -0.571 5.571 11 Si 0.775 3.225 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.066 4.066 16 C -0.064 4.064 17 H 0.102 0.898 18 C -0.147 4.147 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.118 4.118 25 C -0.084 4.084 26 H 0.122 0.878 27 H 0.153 0.847 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.016 0.984 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.145 0.855 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.365 16.008 -5.784 17.076 hybrid contribution 0.214 -1.590 0.486 1.677 sum 1.579 14.418 -5.298 15.441 Atomic orbital electron populations 1.81169 1.14290 1.11300 1.10796 1.29399 0.95249 0.91090 0.91348 1.20188 0.80411 1.06555 1.03206 1.22034 0.88229 1.02669 0.92724 1.62160 1.05661 1.02657 1.54508 1.19429 0.93664 0.87890 0.91085 1.21470 1.34019 0.91206 1.08190 0.92209 1.25651 0.95534 1.02175 0.95596 1.70040 1.40140 1.26818 1.20134 0.85694 0.78729 0.79866 0.78210 1.20525 1.21286 1.19262 1.22184 0.99480 0.89103 0.95833 1.20757 0.99315 0.94602 0.91679 0.89785 1.22358 0.95038 0.95428 1.01881 1.21071 0.98100 0.98971 0.93369 1.20982 0.95186 0.98678 0.96828 1.20838 0.99478 1.00018 0.94037 1.21243 0.97874 0.96584 0.99303 1.21258 0.95317 1.00175 0.99215 1.20773 0.99914 0.97395 0.93764 1.20582 0.96848 0.95770 0.95213 0.87818 0.84724 0.89272 0.91709 0.98410 0.99004 0.93033 0.92278 0.92876 0.89615 0.88899 0.89355 0.90441 0.84841 0.84417 0.85540 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.24 18.54 20.01 0.37 -16.87 16 2 C 0.25 7.38 15.43 89.44 1.38 8.76 16 3 C -0.06 -1.66 5.07 28.79 0.15 -1.52 16 4 C 0.07 2.25 4.97 86.30 0.43 2.68 16 5 N -0.53 -18.57 4.36 -900.80 -3.93 -22.50 16 6 C 0.21 9.44 4.51 85.56 0.39 9.83 16 7 C -0.51 -26.49 8.48 25.60 0.22 -26.28 16 8 H 0.06 3.09 7.12 -2.91 -0.02 3.07 16 9 C 0.01 0.46 5.46 84.66 0.46 0.92 16 10 N -0.93 -53.16 13.29 21.45 0.28 -52.88 16 11 Si 0.95 43.32 29.54 68.60 2.03 45.34 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.06 1.73 4.13 86.30 0.36 2.09 16 16 C -0.04 -1.05 2.90 -10.87 -0.03 -1.08 16 17 H 0.08 1.87 6.61 -2.39 -0.02 1.85 16 18 C -0.11 -1.88 6.60 31.51 0.21 -1.67 16 19 C -0.08 -1.48 6.76 30.52 0.21 -1.28 16 20 C -0.12 -2.94 6.14 -19.59 -0.12 -3.06 16 21 C -0.13 -3.03 10.04 22.30 0.22 -2.80 16 22 C -0.13 -3.26 10.05 22.24 0.22 -3.03 16 23 C -0.14 -3.94 10.05 22.24 0.22 -3.72 16 24 C -0.10 -3.07 9.93 22.30 0.22 -2.85 16 25 C -0.08 -2.36 5.27 -19.59 -0.10 -2.46 16 26 H 0.10 3.28 6.28 -2.39 -0.01 3.26 16 27 H 0.14 2.71 6.26 -2.39 -0.01 2.69 16 28 H 0.09 2.29 6.57 -2.39 -0.02 2.28 16 29 H 0.06 2.34 6.79 -2.38 -0.02 2.32 16 30 H 0.00 -0.12 7.86 -2.39 -0.02 -0.14 16 31 H -0.01 -0.36 6.06 -2.39 -0.01 -0.37 16 32 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 33 H 0.06 1.37 5.82 -2.39 -0.01 1.36 16 34 H 0.05 1.69 7.81 -2.39 -0.02 1.68 16 35 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.09 1.31 7.89 -2.39 -0.02 1.30 16 37 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.14 2.65 8.06 -2.92 -0.02 2.62 16 41 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.11 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -63.39 342.87 4.19 -59.20 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.02 Total: 13.17 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 4.43 Total: -25.48 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -3.28 Total: -92.24 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -63.39 4.19 -59.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780302631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.601 kcal (2) G-P(sol) polarization free energy of solvation -63.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds