Wall clock time and date at job start Tue Mar 31 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.46985 * 2 1 4 4 C 1.46894 * 111.00352 * 288.06407 * 3 2 1 5 5 C 1.50706 * 109.47355 * 160.34434 * 4 3 2 6 6 H 1.07995 * 119.99538 * 4.70975 * 5 4 3 7 7 C 1.37879 * 120.00086 * 184.70900 * 5 4 3 8 8 N 1.31514 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 119.99787 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47215 * 60.00514 * 9 7 5 11 11 H 1.48508 * 109.47027 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47760 * 300.00239 * 9 7 5 13 13 C 1.46899 * 110.99894 * 164.10816 * 3 2 1 14 14 N 1.46500 * 109.47272 * 278.95539 * 13 3 2 15 15 C 1.46763 * 124.34800 * 270.19801 * 14 13 3 16 16 C 1.54484 * 105.53213 * 163.21428 * 15 14 13 17 17 H 1.08997 * 110.99927 * 267.07425 * 16 15 14 18 18 C 1.50702 * 110.96667 * 143.32654 * 16 15 14 19 19 O 1.20819 * 120.00642 * 6.16755 * 18 16 15 20 20 O 1.34231 * 119.99556 * 186.16552 * 18 16 15 21 21 C 1.45199 * 116.99862 * 180.02562 * 20 18 16 22 22 C 1.54630 * 101.76548 * 25.20983 * 16 15 14 23 23 C 1.34418 * 124.34958 * 90.02533 * 14 13 3 24 24 O 1.21282 * 124.94142 * 0.43049 * 23 14 13 25 25 H 1.08995 * 109.47159 * 59.38024 * 1 2 3 26 26 H 1.08999 * 109.46846 * 179.37509 * 1 2 3 27 27 H 1.08996 * 109.47216 * 299.37197 * 1 2 3 28 28 H 1.09008 * 109.47434 * 240.00358 * 2 1 3 29 29 H 1.08999 * 109.47139 * 120.00058 * 2 1 3 30 30 H 1.08997 * 109.47405 * 280.34821 * 4 3 2 31 31 H 1.09004 * 109.46994 * 40.34377 * 4 3 2 32 32 H 0.96994 * 119.99743 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47524 * 158.95664 * 13 3 2 34 34 H 1.08995 * 109.47576 * 38.95532 * 13 3 2 35 35 H 1.08998 * 110.39068 * 44.10351 * 15 14 13 36 36 H 1.09004 * 110.11220 * 282.17742 * 15 14 13 37 37 H 1.08998 * 109.47248 * 59.99596 * 21 20 18 38 38 H 1.09003 * 109.47633 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.47360 * 300.00069 * 21 20 18 40 40 H 1.09001 * 110.48023 * 216.52673 * 22 16 15 41 41 H 1.08995 * 110.59821 * 93.93567 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7942 2.0231 -1.3038 5 6 1.8453 3.5210 -1.1455 6 1 2.1020 3.9545 -0.1903 7 6 1.5642 4.3378 -2.2202 8 7 1.2511 3.8097 -3.3833 9 14 1.6268 6.1942 -2.0238 10 1 2.9936 6.6025 -1.6108 11 1 1.2862 6.8406 -3.3167 12 1 0.6501 6.6158 -0.9878 13 6 3.4387 1.4417 0.3755 14 7 3.5612 1.3711 1.8337 15 6 3.5610 2.5392 2.7222 16 6 3.2778 1.9838 4.1356 17 1 2.2111 2.0085 4.3585 18 6 4.0614 2.7383 5.1785 19 8 4.7021 3.7134 4.8648 20 8 4.0476 2.3270 6.4562 21 6 4.8249 3.1021 7.4067 22 6 3.7833 0.5279 4.0095 23 6 3.6848 0.2280 2.5300 24 8 3.7178 -0.8821 2.0426 25 1 -0.3633 0.5234 -0.8843 26 1 -0.3633 -1.0276 -0.0112 27 1 -0.3633 0.5040 0.8955 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 2.5678 1.7050 -2.0026 31 1 0.8163 1.7314 -1.6868 32 1 1.0530 4.3843 -4.1392 33 1 3.8718 2.3764 0.0194 34 1 3.9675 0.6016 -0.0745 35 1 2.7793 3.2397 2.4285 36 1 4.5345 3.0290 2.6975 37 1 4.4576 4.1282 7.4253 38 1 4.7277 2.6629 8.3995 39 1 5.8734 3.0969 7.1086 40 1 3.1454 -0.1480 4.5791 41 1 4.8169 0.4503 4.3465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782263614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:17 Heat of formation + Delta-G solvation = -106.990269 kcal Electronic energy + Delta-G solvation = -23221.299690 eV Core-core repulsion = 19715.848461 eV Total energy + Delta-G solvation = -3505.451229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12149 -39.84653 -36.92174 -36.74842 -35.93147 -32.77992 -32.31115 -29.85754 -28.31306 -27.60547 -26.93114 -24.68410 -23.32629 -22.59079 -20.68893 -20.07580 -19.17265 -17.99254 -17.11988 -16.94454 -16.50985 -16.21420 -15.61297 -15.27037 -14.71585 -14.32125 -14.02703 -13.82275 -13.62179 -13.52801 -13.23619 -12.94353 -12.79706 -12.43064 -12.27812 -11.85088 -11.58571 -11.51319 -11.44545 -11.17401 -11.08347 -10.92126 -10.87578 -10.70685 -10.62062 -10.29241 -9.79541 -9.60119 -9.30309 -8.55122 -8.44284 -7.35513 -6.05780 -4.08135 1.91454 2.33908 2.71163 3.29884 3.31547 3.36060 3.38440 4.08716 4.23817 4.39554 4.56408 4.78728 4.82146 4.89451 4.94545 4.96984 5.24303 5.30030 5.42322 5.49410 5.71355 5.79430 5.81598 5.84224 6.02235 6.08597 6.14334 6.17897 6.43765 6.60466 6.70466 6.85292 7.12650 7.30371 7.40779 7.46106 7.77457 8.05999 8.11825 8.37396 8.48325 8.98618 9.56459 11.04469 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.005016 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.553703 B = 5580.426916 C = 7005.069598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 N -0.549 5.549 4 C 0.195 3.805 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.294 3.706 14 N -0.597 5.597 15 C 0.119 3.881 16 C -0.097 4.097 17 H 0.132 0.868 18 C 0.475 3.525 19 O -0.497 6.497 20 O -0.356 6.356 21 C 0.035 3.965 22 C -0.140 4.140 23 C 0.517 3.483 24 O -0.534 6.534 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.022 0.978 29 H 0.070 0.930 30 H -0.010 1.010 31 H 0.041 0.959 32 H 0.262 0.738 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.112 0.888 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -3.747 18.547 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 N -0.276 5.276 4 C 0.070 3.930 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.084 3.916 14 N -0.331 5.331 15 C -0.005 4.005 16 C -0.117 4.117 17 H 0.150 0.850 18 C 0.317 3.683 19 O -0.383 6.383 20 O -0.272 6.272 21 C -0.059 4.059 22 C -0.181 4.181 23 C 0.303 3.697 24 O -0.411 6.411 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.008 0.992 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.762 -3.695 18.260 19.229 hybrid contribution 0.433 0.891 -0.438 1.083 sum 5.195 -2.804 17.822 18.775 Atomic orbital electron populations 1.21723 0.95659 0.99881 1.02551 1.22132 0.95783 0.90094 1.00120 1.61892 1.15716 1.15351 1.34682 1.19748 0.96854 0.94050 0.82343 1.21100 1.46807 0.90529 0.96333 0.92060 1.24973 0.95323 0.98925 0.95189 1.69940 1.47145 1.35431 1.01121 0.86584 0.78545 0.85189 0.77221 1.20243 1.21381 1.20204 1.21823 0.90931 1.02239 0.76633 1.48539 1.70403 1.06282 1.07830 1.21960 1.04429 0.88984 0.85109 1.21959 1.01779 0.95294 0.92631 0.85030 1.23259 0.79311 0.83030 0.82677 1.90707 1.40257 1.26155 1.81219 1.86509 1.66362 1.55558 1.18798 1.23298 0.95459 0.96225 0.90929 1.22302 1.04512 0.94950 0.96306 1.20626 0.75814 0.84496 0.88747 1.90706 1.51416 1.23544 1.75428 0.92132 0.93703 0.92740 0.95954 0.91165 0.99170 0.94090 0.92802 0.87921 0.92990 0.88246 0.89547 0.91726 0.88013 0.91797 0.86949 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.99 37.16 0.37 -2.16 16 2 C 0.05 0.92 5.53 -3.83 -0.02 0.90 16 3 N -0.55 -11.62 4.48 -239.98 -1.07 -12.70 16 4 C 0.19 4.90 4.54 -4.98 -0.02 4.88 16 5 C -0.51 -13.65 8.52 -34.44 -0.29 -13.94 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.29 5.61 5.55 -63.32 -0.35 5.25 16 14 N -0.60 -9.55 3.14 -175.91 -0.55 -10.10 16 15 C 0.12 1.60 6.67 -3.12 -0.02 1.58 16 16 C -0.10 -1.02 3.66 -90.13 -0.33 -1.35 16 17 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 18 C 0.48 5.24 7.18 36.01 0.26 5.49 16 19 O -0.50 -6.82 15.32 -18.74 -0.29 -7.11 16 20 O -0.36 -3.35 10.55 -39.26 -0.41 -3.76 16 21 C 0.03 0.23 10.56 101.05 1.07 1.30 16 22 C -0.14 -1.50 6.39 -26.74 -0.17 -1.67 16 23 C 0.52 8.00 7.34 -10.86 -0.08 7.92 16 24 O -0.53 -10.06 15.84 5.56 0.09 -9.98 16 25 H 0.06 1.19 6.52 -51.93 -0.34 0.85 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.02 0.45 8.05 -51.92 -0.42 0.03 16 29 H 0.07 1.37 5.26 -51.93 -0.27 1.10 16 30 H -0.01 -0.25 8.00 -51.93 -0.42 -0.67 16 31 H 0.04 1.11 6.24 -51.93 -0.32 0.79 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.10 2.03 7.25 -51.93 -0.38 1.65 16 34 H 0.05 1.02 7.70 -51.93 -0.40 0.62 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.09 1.17 7.06 -51.93 -0.37 0.80 16 37 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 40 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.10 0.99 7.89 -51.93 -0.41 0.58 16 LS Contribution 340.05 15.07 5.12 5.12 Total: -1.00 -32.08 340.05 -7.34 -39.42 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.25 Total: -1.38 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 0.31 Total: 9.68 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.89 Total: -48.11 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.61 Total: -20.84 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.08 -7.34 -39.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782263614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.569 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds