Wall clock time and date at job start Tue Mar 31 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00262 * 2 1 4 4 O 1.20821 * 120.00352 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99719 * 180.02562 * 3 2 1 6 6 H 1.08992 * 110.85791 * 62.34014 * 5 3 2 7 7 C 1.54627 * 110.96803 * 298.54368 * 5 3 2 8 8 C 1.51288 * 104.19399 * 217.08639 * 7 5 3 9 9 O 1.21276 * 124.93928 * 196.28048 * 8 7 5 10 10 N 1.34416 * 110.11221 * 16.25482 * 8 7 5 11 11 C 1.46509 * 124.34313 * 180.40754 * 10 8 7 12 12 N 1.46898 * 109.46894 * 90.02910 * 11 10 8 13 13 C 1.46901 * 111.00443 * 81.04432 * 12 11 10 14 14 C 1.46906 * 110.99820 * 204.99744 * 12 11 10 15 15 H 1.08997 * 109.47016 * 54.99923 * 14 12 11 16 16 C 1.53000 * 109.47005 * 294.99916 * 14 12 11 17 17 C 1.50696 * 109.47235 * 174.99804 * 14 12 11 18 18 H 1.08005 * 119.99990 * 0.02562 * 17 14 12 19 19 C 1.37881 * 120.00144 * 179.97438 * 17 14 12 20 20 N 1.31509 * 119.99894 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00087 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47221 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47248 * 120.00015 * 21 19 17 24 24 H 1.48495 * 109.47136 * 240.00091 * 21 19 17 25 25 C 1.46759 * 111.30572 * 0.67238 * 10 8 7 26 26 H 1.09001 * 109.47526 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46958 * 300.00184 * 1 2 3 28 28 H 1.09000 * 109.47429 * 59.99217 * 1 2 3 29 29 H 1.09003 * 110.48152 * 98.41374 * 7 5 3 30 30 H 1.08991 * 110.60433 * 335.81839 * 7 5 3 31 31 H 1.08994 * 109.47108 * 330.02801 * 11 10 8 32 32 H 1.08996 * 109.46801 * 210.02205 * 11 10 8 33 33 H 1.09002 * 109.47401 * 183.95136 * 13 12 11 34 34 H 1.09001 * 109.46874 * 63.95149 * 13 12 11 35 35 H 1.09004 * 109.46970 * 303.95282 * 13 12 11 36 36 H 1.09001 * 109.47097 * 179.97438 * 16 14 12 37 37 H 1.08997 * 109.47240 * 299.99870 * 16 14 12 38 38 H 1.08998 * 109.47262 * 60.00073 * 16 14 12 39 39 H 0.97000 * 120.00037 * 179.97438 * 20 19 17 40 40 H 1.09004 * 110.24258 * 101.71895 * 25 10 8 41 41 H 1.08997 * 110.24785 * 223.71511 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9783 0.8230 -0.9029 7 6 4.1555 0.6144 1.2674 8 6 5.3369 1.4887 1.6262 9 8 6.2312 1.1721 2.3818 10 7 5.2513 2.6671 0.9854 11 6 6.2373 3.7446 1.1014 12 7 7.2710 3.5753 0.0716 13 6 6.8146 4.0973 -1.2235 14 6 8.5308 4.2106 0.4808 15 1 8.8365 3.8195 1.4512 16 6 8.3297 5.7240 0.5813 17 6 9.5986 3.9124 -0.5399 18 1 9.3647 3.3114 -1.4063 19 6 10.8739 4.4077 -0.3684 20 7 11.1583 5.1407 0.6857 21 14 12.1973 4.0386 -1.6341 22 1 11.6255 3.1999 -2.7180 23 1 12.7030 5.3118 -2.2072 24 1 13.3156 3.3102 -0.9829 25 6 4.0403 2.7382 0.1594 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 4.4850 -0.4017 1.0503 30 1 3.4231 0.6128 2.0746 31 1 6.6985 3.7102 2.0883 32 1 5.7424 4.7061 0.9648 33 1 7.5702 3.8964 -1.9830 34 1 6.6546 5.1727 -1.1457 35 1 5.8803 3.6102 -1.5027 36 1 9.2643 6.1953 0.8853 37 1 8.0240 6.1151 -0.3891 38 1 7.5574 5.9397 1.3196 39 1 12.0556 5.4888 0.8066 40 1 3.2762 3.3324 0.6607 41 1 4.2731 3.1668 -0.8154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782271102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:58 Heat of formation + Delta-G solvation = -96.421226 kcal Electronic energy + Delta-G solvation = -23139.889197 eV Core-core repulsion = 19634.896276 eV Total energy + Delta-G solvation = -3504.992921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.18211 -39.82401 -37.13123 -36.96742 -35.90239 -33.13755 -31.87223 -28.77017 -28.22098 -27.71915 -26.54657 -25.19924 -23.85227 -23.13911 -20.76930 -19.74291 -19.04708 -18.05307 -17.19933 -16.97261 -16.37736 -16.06345 -15.66081 -15.20065 -14.88138 -14.18814 -14.05312 -13.72244 -13.67078 -13.45014 -13.26162 -13.02700 -12.73829 -12.48809 -12.33049 -11.85153 -11.55189 -11.44753 -11.15843 -11.09210 -11.08124 -10.88055 -10.81682 -10.73100 -10.53895 -10.08213 -9.94863 -9.57052 -8.96504 -8.53221 -8.39426 -7.26980 -6.01205 -4.05021 1.82254 2.26505 2.80482 3.26496 3.30683 3.38695 3.42955 3.99456 4.19591 4.42189 4.48208 4.72244 4.75941 4.83024 4.89591 5.08839 5.18362 5.30986 5.34409 5.40594 5.47268 5.62052 5.66783 5.94234 6.00805 6.12440 6.27125 6.59039 6.69583 6.74957 6.84953 7.06321 7.30073 7.36642 7.44604 7.68865 7.80922 8.08496 8.31256 8.43679 8.55682 9.00061 9.59887 11.06031 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.003576 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.703916 B = 7828.908368 C = 7878.006115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.477 3.523 4 O -0.501 6.501 5 C -0.097 4.097 6 H 0.133 0.867 7 C -0.141 4.141 8 C 0.523 3.477 9 O -0.517 6.517 10 N -0.606 5.606 11 C 0.291 3.709 12 N -0.547 5.547 13 C 0.034 3.966 14 C 0.216 3.784 15 H 0.043 0.957 16 C -0.173 4.173 17 C -0.499 4.499 18 H 0.063 0.937 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.284 1.284 25 C 0.115 3.885 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.021 0.979 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.032 0.968 38 H 0.006 0.994 39 H 0.260 0.740 40 H 0.086 0.914 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.335 -7.228 -2.059 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.319 3.681 4 O -0.388 6.388 5 C -0.117 4.117 6 H 0.150 0.850 7 C -0.181 4.181 8 C 0.309 3.691 9 O -0.392 6.392 10 N -0.342 5.342 11 C 0.080 3.920 12 N -0.272 5.272 13 C -0.114 4.114 14 C 0.110 3.890 15 H 0.061 0.939 16 C -0.233 4.233 17 C -0.538 4.538 18 H 0.081 0.919 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.210 1.210 25 C -0.009 4.009 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.051 0.949 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.771 -7.436 -1.606 21.184 hybrid contribution 0.319 0.803 -0.743 1.140 sum -19.452 -6.633 -2.349 20.686 Atomic orbital electron populations 1.23310 0.76040 1.03871 1.02689 1.86518 1.23584 1.33040 1.83892 1.23272 0.91260 0.81486 0.72119 1.90690 1.66895 1.36273 1.44920 1.21980 0.87844 0.99323 1.02505 0.84971 1.22325 0.97859 1.01279 0.96643 1.20500 0.86219 0.82188 0.80222 1.90761 1.37053 1.75014 1.36339 1.48526 1.22503 1.17226 1.45906 1.21778 0.86573 0.85969 0.97667 1.62031 1.04361 1.59125 1.01699 1.22323 0.99135 0.96582 0.93384 1.19310 0.83931 0.88416 0.97348 0.93897 1.22455 1.01535 1.01617 0.97651 1.21114 0.93714 1.31422 1.07519 0.91888 1.24924 0.98448 0.95175 0.95739 1.69887 1.20470 1.35207 1.27720 0.86447 0.81700 0.77876 0.81407 1.19783 1.21202 1.21030 1.22057 0.87609 0.93776 0.97468 0.87928 0.91766 0.91754 0.86767 0.87794 0.89091 0.93190 0.90640 0.96081 0.94204 0.89088 0.94898 0.97486 0.93010 0.89619 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.09 10.55 -39.26 -0.41 -3.51 16 3 C 0.48 4.78 7.18 36.01 0.26 5.03 16 4 O -0.50 -6.18 15.32 -18.75 -0.29 -6.47 16 5 C -0.10 -0.95 3.67 -90.04 -0.33 -1.28 16 6 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 7 C -0.14 -1.52 6.39 -26.74 -0.17 -1.69 16 8 C 0.52 8.53 8.02 -10.86 -0.09 8.44 16 9 O -0.52 -10.91 17.59 5.56 0.10 -10.81 16 10 N -0.61 -9.43 3.13 -175.79 -0.55 -9.98 16 11 C 0.29 5.32 4.76 -63.31 -0.30 5.02 16 12 N -0.55 -11.63 4.84 -240.19 -1.16 -12.79 16 13 C 0.03 0.63 8.74 60.07 0.53 1.16 16 14 C 0.22 5.42 2.28 -68.86 -0.16 5.26 16 15 H 0.04 1.22 7.93 -51.93 -0.41 0.81 16 16 C -0.17 -4.08 8.34 37.16 0.31 -3.77 16 17 C -0.50 -13.63 7.94 -34.44 -0.27 -13.90 16 18 H 0.06 1.73 6.75 -52.48 -0.35 1.37 16 19 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 20 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 21 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.11 1.35 6.46 -3.03 -0.02 1.33 16 26 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.39 8.13 -51.92 -0.42 -0.04 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 0.98 7.89 -51.93 -0.41 0.57 16 31 H 0.09 1.84 7.50 -51.93 -0.39 1.45 16 32 H 0.05 0.83 7.56 -51.93 -0.39 0.44 16 33 H 0.07 1.53 6.53 -51.93 -0.34 1.19 16 34 H 0.02 0.38 6.27 -51.93 -0.33 0.06 16 35 H 0.04 0.62 5.74 -51.93 -0.30 0.32 16 36 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 37 H 0.03 0.74 6.39 -51.93 -0.33 0.41 16 38 H 0.01 0.13 7.13 -51.93 -0.37 -0.24 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.09 0.99 7.07 -51.93 -0.37 0.63 16 41 H 0.09 1.01 6.02 -51.93 -0.31 0.70 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -32.87 331.10 -6.86 -39.73 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.87 Total: -1.10 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 0.73 Total: 8.39 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -1.08 Total: -47.62 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.60 Total: -20.79 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.87 -6.86 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782271102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.689 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds