Wall clock time and date at job start Tue Mar 31 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 117.00262 * 2 1 4 4 O 1.20821 * 120.00352 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99719 * 180.02562 * 3 2 1 6 6 H 1.08992 * 110.85791 * 62.34014 * 5 3 2 7 7 C 1.54627 * 110.96803 * 298.54368 * 5 3 2 8 8 C 1.51288 * 104.19399 * 217.08639 * 7 5 3 9 9 O 1.21276 * 124.93928 * 196.28048 * 8 7 5 10 10 N 1.34416 * 110.11221 * 16.25482 * 8 7 5 11 11 C 1.46509 * 124.34313 * 180.40754 * 10 8 7 12 12 N 1.46898 * 109.46894 * 90.02910 * 11 10 8 13 13 C 1.46901 * 111.00443 * 81.04432 * 12 11 10 14 14 C 1.46906 * 110.99820 * 204.99744 * 12 11 10 15 15 H 1.08997 * 109.47016 * 54.99923 * 14 12 11 16 16 C 1.53000 * 109.47005 * 294.99916 * 14 12 11 17 17 C 1.50696 * 109.47235 * 174.99804 * 14 12 11 18 18 H 1.08005 * 119.99990 * 0.02562 * 17 14 12 19 19 C 1.37881 * 120.00144 * 179.97438 * 17 14 12 20 20 N 1.31509 * 119.99894 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00087 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.47221 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47248 * 120.00015 * 21 19 17 24 24 H 1.48495 * 109.47136 * 240.00091 * 21 19 17 25 25 C 1.46759 * 111.30572 * 0.67238 * 10 8 7 26 26 H 1.09001 * 109.47526 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46958 * 300.00184 * 1 2 3 28 28 H 1.09000 * 109.47429 * 59.99217 * 1 2 3 29 29 H 1.09003 * 110.48152 * 98.41374 * 7 5 3 30 30 H 1.08991 * 110.60433 * 335.81839 * 7 5 3 31 31 H 1.08994 * 109.47108 * 330.02801 * 11 10 8 32 32 H 1.08996 * 109.46801 * 210.02205 * 11 10 8 33 33 H 1.09002 * 109.47401 * 183.95136 * 13 12 11 34 34 H 1.09001 * 109.46874 * 63.95149 * 13 12 11 35 35 H 1.09004 * 109.46970 * 303.95282 * 13 12 11 36 36 H 1.09001 * 109.47097 * 179.97438 * 16 14 12 37 37 H 1.08997 * 109.47240 * 299.99870 * 16 14 12 38 38 H 1.08998 * 109.47262 * 60.00073 * 16 14 12 39 39 H 0.97000 * 120.00037 * 179.97438 * 20 19 17 40 40 H 1.09004 * 110.24258 * 101.71895 * 25 10 8 41 41 H 1.08997 * 110.24785 * 223.71511 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9783 0.8230 -0.9029 7 6 4.1555 0.6144 1.2674 8 6 5.3369 1.4887 1.6262 9 8 6.2312 1.1721 2.3818 10 7 5.2513 2.6671 0.9854 11 6 6.2373 3.7446 1.1014 12 7 7.2710 3.5753 0.0716 13 6 6.8146 4.0973 -1.2235 14 6 8.5308 4.2106 0.4808 15 1 8.8365 3.8195 1.4512 16 6 8.3297 5.7240 0.5813 17 6 9.5986 3.9124 -0.5399 18 1 9.3647 3.3114 -1.4063 19 6 10.8739 4.4077 -0.3684 20 7 11.1583 5.1407 0.6857 21 14 12.1973 4.0386 -1.6341 22 1 11.6255 3.1999 -2.7180 23 1 12.7030 5.3118 -2.2072 24 1 13.3156 3.3102 -0.9829 25 6 4.0403 2.7382 0.1594 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 4.4850 -0.4017 1.0503 30 1 3.4231 0.6128 2.0746 31 1 6.6985 3.7102 2.0883 32 1 5.7424 4.7061 0.9648 33 1 7.5702 3.8964 -1.9830 34 1 6.6546 5.1727 -1.1457 35 1 5.8803 3.6102 -1.5027 36 1 9.2643 6.1953 0.8853 37 1 8.0240 6.1151 -0.3891 38 1 7.5574 5.9397 1.3196 39 1 12.0556 5.4888 0.8066 40 1 3.2762 3.3324 0.6607 41 1 4.2731 3.1668 -0.8154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782271102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:58 Heat of formation + Delta-G solvation = -119.604609 kcal Electronic energy + Delta-G solvation = -23140.894504 eV Core-core repulsion = 19634.896276 eV Total energy + Delta-G solvation = -3505.998228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.08758 -40.89671 -38.82126 -37.82199 -37.08854 -34.90909 -33.29804 -30.50708 -29.06972 -28.73542 -27.85538 -27.16938 -25.23861 -24.31773 -21.64196 -21.39757 -20.40440 -18.88047 -18.37032 -17.98434 -17.84067 -17.33516 -16.85807 -16.70741 -16.41532 -15.67763 -15.25318 -15.08898 -14.93436 -14.61294 -14.45882 -14.15353 -13.95221 -13.84925 -13.34219 -13.11951 -13.00206 -12.85625 -12.68969 -12.65406 -12.46854 -12.40058 -12.23478 -12.02784 -11.83091 -11.77295 -11.62066 -10.97488 -10.89679 -10.51310 -9.87881 -8.94076 -8.11496 -6.22852 1.06172 1.41217 1.43287 1.50508 1.55188 1.57854 2.06803 2.43270 3.09636 3.17900 3.26692 3.47182 3.73823 3.85473 4.04428 4.11262 4.32252 4.36147 4.39254 4.40688 4.54620 4.64120 4.69978 4.74384 4.79974 4.83526 4.85519 4.86159 5.08035 5.20293 5.33155 5.44269 5.52347 5.68571 5.78138 6.07733 6.20367 6.47705 6.64212 6.64907 6.89850 7.15861 7.46467 8.94903 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.003576 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.703916 B = 7828.908368 C = 7878.006115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.486 3.514 4 O -0.526 6.526 5 C -0.085 4.085 6 H 0.155 0.845 7 C -0.124 4.124 8 C 0.510 3.490 9 O -0.577 6.577 10 N -0.607 5.607 11 C 0.296 3.704 12 N -0.561 5.561 13 C 0.039 3.961 14 C 0.222 3.778 15 H -0.004 1.004 16 C -0.158 4.158 17 C -0.514 4.514 18 H 0.058 0.942 19 C 0.009 3.991 20 N -0.921 5.921 21 Si 0.962 3.038 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.285 1.285 25 C 0.113 3.887 26 H 0.131 0.869 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.134 0.866 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.091 0.909 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.397 -8.133 -3.818 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C 0.329 3.671 4 O -0.415 6.415 5 C -0.104 4.104 6 H 0.173 0.827 7 C -0.164 4.164 8 C 0.298 3.702 9 O -0.456 6.456 10 N -0.341 5.341 11 C 0.084 3.916 12 N -0.287 5.287 13 C -0.108 4.108 14 C 0.115 3.885 15 H 0.014 0.986 16 C -0.217 4.217 17 C -0.552 4.552 18 H 0.077 0.923 19 C -0.189 4.189 20 N -0.561 5.561 21 Si 0.787 3.213 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.211 1.211 25 C -0.010 4.010 26 H 0.149 0.851 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.897 -8.352 -3.395 23.680 hybrid contribution 0.851 1.054 -0.161 1.364 sum -21.046 -7.298 -3.556 22.557 Atomic orbital electron populations 1.23597 0.74439 1.05815 1.02726 1.86507 1.25106 1.32069 1.83358 1.23134 0.91058 0.81511 0.71423 1.90694 1.67384 1.37172 1.46251 1.21921 0.87991 0.97630 1.02856 0.82697 1.22261 0.95606 1.00861 0.97704 1.21480 0.86861 0.82775 0.79059 1.90727 1.39773 1.76250 1.38861 1.48559 1.22806 1.16449 1.46287 1.21564 0.86593 0.87950 0.95475 1.61887 1.03971 1.59435 1.03419 1.22315 1.00001 0.97198 0.91309 1.18986 0.85660 0.89272 0.94570 0.98632 1.22221 1.00678 1.00253 0.98555 1.21386 0.94755 1.31328 1.07749 0.92338 1.25719 1.00578 0.95038 0.97556 1.70023 1.20918 1.35959 1.29243 0.85448 0.78784 0.77897 0.79128 1.19063 1.20391 1.21104 1.22223 0.85912 0.95598 0.97224 0.85113 0.91849 0.91664 0.84839 0.86024 0.92115 0.91013 0.92509 0.95598 0.90628 0.91992 0.94010 0.95439 0.92971 0.89077 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -5.00 10.55 -51.41 -0.54 -5.54 16 3 C 0.49 8.19 7.18 71.24 0.51 8.70 16 4 O -0.53 -11.60 15.32 21.98 0.34 -11.26 16 5 C -0.08 -1.37 3.67 -10.42 -0.04 -1.41 16 6 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 7 C -0.12 -2.37 6.39 30.59 0.20 -2.18 16 8 C 0.51 16.37 8.02 87.90 0.70 17.07 16 9 O -0.58 -25.13 17.59 -3.02 -0.05 -25.19 16 10 N -0.61 -18.24 3.13 -828.69 -2.59 -20.83 16 11 C 0.30 10.82 4.76 170.80 0.81 11.64 16 12 N -0.56 -23.94 4.84 -913.83 -4.42 -28.36 16 13 C 0.04 1.41 8.74 127.69 1.12 2.52 16 14 C 0.22 11.49 2.28 44.17 0.10 11.59 16 15 H 0.00 -0.26 7.93 -2.39 -0.02 -0.27 16 16 C -0.16 -7.52 8.34 71.98 0.60 -6.92 16 17 C -0.51 -28.57 7.94 25.60 0.20 -28.36 16 18 H 0.06 3.24 6.75 -2.91 -0.02 3.22 16 19 C 0.01 0.53 5.30 84.66 0.45 0.98 16 20 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 21 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 25 C 0.11 2.34 6.46 86.90 0.56 2.90 16 26 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.61 8.13 -2.38 -0.02 0.59 16 28 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 29 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.12 1.94 7.89 -2.39 -0.02 1.93 16 31 H 0.06 2.58 7.50 -2.39 -0.02 2.56 16 32 H 0.07 2.30 7.56 -2.39 -0.02 2.28 16 33 H 0.06 2.24 6.53 -2.39 -0.02 2.22 16 34 H 0.03 0.89 6.27 -2.39 -0.01 0.88 16 35 H 0.08 2.12 5.74 -2.38 -0.01 2.11 16 36 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 37 H 0.04 1.87 6.39 -2.39 -0.02 1.85 16 38 H 0.03 1.14 7.13 -2.39 -0.02 1.13 16 39 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.09 1.87 7.07 -2.38 -0.02 1.85 16 41 H 0.10 1.90 6.02 -2.39 -0.01 1.88 16 Total: -1.00 -73.95 331.10 2.45 -71.50 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.04 Total: 9.02 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 6.41 Total: 17.99 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -6.77 Total: -102.79 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.26 Total: -41.99 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -73.95 2.45 -71.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782271102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.102 kcal (2) G-P(sol) polarization free energy of solvation -73.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds