Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 116.99743 * 2 1 4 4 O 1.20831 * 119.99851 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99949 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.88207 * 62.36525 * 5 3 2 7 7 C 1.54621 * 110.96961 * 298.55288 * 5 3 2 8 8 C 1.51280 * 104.31291 * 266.74033 * 7 5 3 9 9 O 1.21288 * 124.94008 * 163.64291 * 8 7 5 10 10 N 1.34416 * 110.11861 * 343.68704 * 8 7 5 11 11 C 1.46498 * 124.35212 * 179.60959 * 10 8 7 12 12 N 1.46903 * 109.46989 * 90.02626 * 11 10 8 13 13 C 1.46892 * 111.00312 * 85.30442 * 12 11 10 14 14 C 1.46898 * 110.99697 * 209.26243 * 12 11 10 15 15 H 1.09006 * 109.46793 * 186.38911 * 14 12 11 16 16 C 1.53000 * 109.46957 * 306.38396 * 14 12 11 17 17 C 1.50700 * 109.47774 * 66.38740 * 14 12 11 18 18 H 1.08002 * 119.99581 * 0.02562 * 17 14 12 19 19 C 1.37869 * 120.00442 * 180.02562 * 17 14 12 20 20 N 1.31520 * 119.99948 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00370 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.46782 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47711 * 119.99909 * 21 19 17 24 24 H 1.48500 * 109.47102 * 240.00004 * 21 19 17 25 25 C 1.46763 * 111.29969 * 359.58830 * 10 8 7 26 26 H 1.09000 * 109.46535 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46871 * 299.99023 * 1 2 3 28 28 H 1.09000 * 109.47421 * 59.99368 * 1 2 3 29 29 H 1.09004 * 110.48522 * 147.99780 * 7 5 3 30 30 H 1.09001 * 110.49165 * 25.49374 * 7 5 3 31 31 H 1.08995 * 109.47252 * 210.02219 * 11 10 8 32 32 H 1.08998 * 109.47125 * 330.02563 * 11 10 8 33 33 H 1.08996 * 109.47371 * 59.99751 * 13 12 11 34 34 H 1.09004 * 109.47431 * 180.02562 * 13 12 11 35 35 H 1.09008 * 109.47161 * 300.00109 * 13 12 11 36 36 H 1.08998 * 109.46996 * 65.98078 * 16 14 12 37 37 H 1.09010 * 109.47018 * 185.97750 * 16 14 12 38 38 H 1.08998 * 109.47600 * 305.97743 * 16 14 12 39 39 H 0.97000 * 120.00248 * 180.02562 * 20 19 17 40 40 H 1.09001 * 110.24787 * 136.01230 * 25 10 8 41 41 H 1.08999 * 110.24928 * 257.93260 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9794 0.8234 -0.9014 7 6 4.1546 0.6150 1.2692 8 6 4.3062 1.7576 2.2490 9 8 4.4671 1.6307 3.4445 10 7 4.2358 2.9338 1.6022 11 6 4.3367 4.2424 2.2530 12 7 5.7436 4.6635 2.2904 13 6 6.1259 5.3337 1.0405 14 6 6.0043 5.5254 3.4510 15 1 7.0211 5.9143 3.3936 16 6 5.0123 6.6902 3.4544 17 6 5.8435 4.7249 4.7177 18 1 5.5749 3.6801 4.6657 19 6 6.0393 5.3262 5.9428 20 7 6.3670 6.5983 6.0061 21 14 5.8407 4.3337 7.5128 22 1 5.4719 2.9363 7.1716 23 1 7.1200 4.3385 8.2668 24 1 4.7716 4.9374 8.3481 25 6 4.0454 2.7387 0.1602 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 5.1245 0.1677 1.0517 30 1 3.4688 -0.1358 1.6617 31 1 3.7536 4.9729 1.6924 32 1 3.9510 4.1730 3.2701 33 1 5.5012 6.2148 0.8947 34 1 7.1722 5.6346 1.0948 35 1 5.9884 4.6484 0.2040 36 1 4.0045 6.3086 3.6183 37 1 5.2716 7.3860 4.2525 38 1 5.0539 7.2058 2.4950 39 1 6.5051 7.0213 6.8680 40 1 3.2881 3.4261 -0.2168 41 1 4.9868 2.8886 -0.3684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782271104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = -123.300335 kcal Electronic energy + Delta-G solvation = -23669.345571 eV Core-core repulsion = 20163.187085 eV Total energy + Delta-G solvation = -3506.158486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.10580 -40.75409 -38.76916 -37.80519 -37.00223 -34.84999 -33.24346 -30.66725 -29.06603 -28.60816 -27.70949 -27.14577 -25.10878 -24.45365 -21.56491 -21.48694 -20.31603 -18.97553 -18.37573 -17.94558 -17.90656 -17.26686 -16.96726 -16.39947 -16.27017 -15.51564 -15.34452 -15.18215 -14.69203 -14.56911 -14.53345 -13.99994 -13.78187 -13.72303 -13.31443 -13.18274 -13.11114 -12.86477 -12.78795 -12.63533 -12.55215 -12.42715 -12.33607 -12.14958 -11.81321 -11.80013 -11.48487 -10.98126 -10.78993 -10.53042 -9.76827 -8.95510 -8.14018 -6.20887 1.09025 1.33418 1.35624 1.52318 1.61772 1.70289 2.10224 2.42114 3.15046 3.19628 3.33666 3.50355 3.70305 3.89951 4.10785 4.27942 4.32341 4.35901 4.42389 4.56115 4.62027 4.65591 4.68791 4.71141 4.79211 4.82901 4.86865 4.89144 5.04034 5.07693 5.34462 5.44584 5.57495 5.68188 5.81952 6.14806 6.28446 6.42375 6.65645 6.72365 6.92743 7.29406 7.47994 8.92373 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021207 B = 0.004843 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.027039 B = 5780.374677 C = 6434.873295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.466 3.534 4 O -0.533 6.533 5 C -0.079 4.079 6 H 0.192 0.808 7 C -0.128 4.128 8 C 0.493 3.507 9 O -0.579 6.579 10 N -0.609 5.609 11 C 0.309 3.691 12 N -0.561 5.561 13 C 0.028 3.972 14 C 0.222 3.778 15 H 0.015 0.985 16 C -0.154 4.154 17 C -0.511 4.511 18 H 0.047 0.953 19 C 0.018 3.982 20 N -0.917 5.917 21 Si 0.946 3.054 22 H -0.285 1.285 23 H -0.274 1.274 24 H -0.277 1.277 25 C 0.107 3.893 26 H 0.133 0.867 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.024 0.976 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.261 0.739 40 H 0.090 0.910 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 -12.375 -19.204 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.310 3.690 4 O -0.422 6.422 5 C -0.098 4.098 6 H 0.209 0.791 7 C -0.168 4.168 8 C 0.282 3.718 9 O -0.458 6.458 10 N -0.343 5.343 11 C 0.097 3.903 12 N -0.287 5.287 13 C -0.119 4.119 14 C 0.115 3.885 15 H 0.033 0.967 16 C -0.213 4.213 17 C -0.550 4.550 18 H 0.066 0.934 19 C -0.181 4.181 20 N -0.557 5.557 21 Si 0.773 3.227 22 H -0.211 1.211 23 H -0.199 1.199 24 H -0.203 1.203 25 C -0.015 4.015 26 H 0.152 0.848 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.922 -12.353 -18.375 23.516 hybrid contribution -0.771 0.827 1.359 1.767 sum -8.692 -11.526 -17.017 22.315 Atomic orbital electron populations 1.23545 0.74907 1.05754 1.02295 1.86479 1.24780 1.32336 1.83539 1.23884 0.92530 0.81336 0.71242 1.90691 1.67768 1.37488 1.46256 1.22181 0.86551 0.97572 1.03492 0.79085 1.22365 1.06519 0.95894 0.92011 1.21808 0.74942 0.86602 0.88495 1.90759 1.51162 1.86353 1.17540 1.48574 1.70579 1.05925 1.09260 1.21396 0.89496 0.82738 0.96664 1.61830 1.20380 1.42707 1.03740 1.22435 1.00465 0.97347 0.91695 1.19015 0.93807 0.88692 0.86986 0.96719 1.22210 0.98637 1.00779 0.99710 1.21458 1.45709 0.96435 0.91352 0.93428 1.25499 0.95283 0.95817 1.01458 1.69993 1.49176 1.11152 1.25411 0.85683 0.77956 0.78716 0.80348 1.21083 1.19929 1.20253 1.22418 1.03285 0.95465 0.80335 0.84847 0.93125 0.91346 0.83055 0.86816 0.92120 0.92344 0.95608 0.92324 0.89847 0.95716 0.92051 0.94422 0.92958 0.89132 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.21 10.35 -51.41 -0.53 -6.74 16 3 C 0.47 9.58 7.25 71.24 0.52 10.10 16 4 O -0.53 -14.74 15.27 21.95 0.34 -14.41 16 5 C -0.08 -1.19 3.67 -10.36 -0.04 -1.23 16 6 H 0.19 0.81 8.14 -2.39 -0.02 0.80 16 7 C -0.13 -2.58 6.39 30.58 0.20 -2.39 16 8 C 0.49 17.82 8.02 87.90 0.71 18.52 16 9 O -0.58 -28.65 17.22 -3.05 -0.05 -28.70 16 10 N -0.61 -20.29 3.17 -828.34 -2.63 -22.92 16 11 C 0.31 12.63 4.24 170.81 0.72 13.35 16 12 N -0.56 -24.26 4.80 -913.85 -4.38 -28.65 16 13 C 0.03 0.94 9.19 127.69 1.17 2.11 16 14 C 0.22 11.61 2.29 44.17 0.10 11.71 16 15 H 0.01 0.85 8.01 -2.38 -0.02 0.83 16 16 C -0.15 -7.53 8.26 71.98 0.59 -6.94 16 17 C -0.51 -30.49 7.60 25.60 0.19 -30.29 16 18 H 0.05 3.08 7.11 -2.91 -0.02 3.06 16 19 C 0.02 1.06 5.30 84.65 0.45 1.51 16 20 N -0.92 -54.55 11.39 21.45 0.24 -54.30 16 21 Si 0.95 48.33 29.54 68.60 2.03 50.36 16 22 H -0.29 -15.29 7.11 99.48 0.71 -14.59 16 23 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 24 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 25 C 0.11 2.19 6.32 86.96 0.55 2.74 16 26 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 28 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 29 H 0.15 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.11 2.19 7.73 -2.39 -0.02 2.17 16 31 H 0.06 2.24 7.74 -2.39 -0.02 2.22 16 32 H 0.06 2.97 6.03 -2.39 -0.01 2.96 16 33 H 0.03 0.81 6.60 -2.39 -0.02 0.79 16 34 H 0.06 1.95 8.05 -2.39 -0.02 1.93 16 35 H 0.08 2.13 6.71 -2.38 -0.02 2.11 16 36 H 0.02 1.18 7.02 -2.39 -0.02 1.17 16 37 H 0.06 3.33 6.25 -2.38 -0.01 3.32 16 38 H 0.04 1.58 6.56 -2.39 -0.02 1.56 16 39 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.09 1.95 6.96 -2.39 -0.02 1.93 16 41 H 0.12 1.71 7.19 -2.39 -0.02 1.69 16 Total: -1.00 -81.97 333.08 2.40 -79.57 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.03 Total: 5.03 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 6.36 Total: 20.77 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -6.77 Total: -105.87 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.25 Total: -49.85 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -81.97 2.40 -79.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782271104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.733 kcal (2) G-P(sol) polarization free energy of solvation -81.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds