Wall clock time and date at job start Tue Mar 31 2020 05:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48505 * 109.47289 * 240.00124 * 3 2 1 5 5 H 1.48498 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46859 * 120.00067 * 3 2 1 7 7 C 1.37883 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99426 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46650 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46710 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99637 * 180.02562 * 11 10 9 13 13 O 1.21584 * 120.00013 * 4.97644 * 12 11 10 14 14 N 1.34775 * 119.99717 * 184.97919 * 12 11 10 15 15 C 1.46917 * 120.61017 * 354.48512 * 14 12 11 16 16 C 1.53210 * 108.78116 * 234.04758 * 15 14 12 17 17 C 1.52987 * 109.28505 * 305.59240 * 16 15 14 18 18 C 1.53001 * 109.89912 * 61.02699 * 17 16 15 19 19 C 1.46924 * 120.60553 * 174.76351 * 14 12 11 20 20 O 1.43309 * 109.64467 * 181.58439 * 17 16 15 21 21 C 1.44218 * 107.25918 * 120.35388 * 20 17 16 22 22 C 1.54921 * 103.08022 * 21.40311 * 21 20 17 23 23 O 1.43700 * 109.41299 * 300.90378 * 17 16 15 24 24 H 0.96999 * 120.00083 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47314 * 60.00872 * 9 7 2 26 26 H 1.08996 * 109.47651 * 300.00112 * 9 7 2 27 27 H 1.08995 * 109.47464 * 60.00220 * 10 9 7 28 28 H 1.09007 * 109.47083 * 299.99798 * 10 9 7 29 29 H 0.96990 * 120.00346 * 359.97438 * 11 10 9 30 30 H 1.09003 * 109.58210 * 353.83534 * 15 14 12 31 31 H 1.08995 * 109.58892 * 114.25388 * 15 14 12 32 32 H 1.08997 * 109.50066 * 185.65046 * 16 15 14 33 33 H 1.08997 * 109.53123 * 65.55530 * 16 15 14 34 34 H 1.08993 * 109.50375 * 179.01035 * 18 17 16 35 35 H 1.09003 * 109.52835 * 58.91564 * 18 17 16 36 36 H 1.08999 * 109.58832 * 245.73001 * 19 14 12 37 37 H 1.08998 * 109.58292 * 6.15688 * 19 14 12 38 38 H 1.08997 * 110.69367 * 263.00402 * 21 20 17 39 39 H 1.09001 * 110.83771 * 139.86759 * 21 20 17 40 40 H 1.09004 * 110.97203 * 206.35980 * 22 21 20 41 41 H 1.09003 * 111.00795 * 82.59790 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.3990 -6.1000 0.0915 14 7 1.5166 -7.2630 -0.1026 15 6 0.0476 -7.2844 -0.0935 16 6 -0.4249 -8.2469 1.0009 17 6 0.2268 -9.6144 0.7870 18 6 1.7487 -9.4858 0.8771 19 6 2.2419 -8.5354 -0.2187 20 8 -0.2386 -10.5313 1.7852 21 6 -0.8807 -11.6238 1.0966 22 6 -0.2729 -11.5469 -0.3264 23 8 -0.1335 -10.1175 -0.5100 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.5428 -4.9308 -0.0011 30 1 -0.3310 -6.2831 0.1121 31 1 -0.3189 -7.6241 -1.0621 32 1 -1.5090 -8.3488 0.9526 33 1 -0.1393 -7.8565 1.9777 34 1 2.2054 -10.4661 0.7413 35 1 2.0236 -9.0884 1.8542 36 1 2.0522 -8.9762 -1.1974 37 1 3.3106 -8.3593 -0.0960 38 1 -1.9601 -11.4765 1.0628 39 1 -0.6376 -12.5758 1.5683 40 1 -0.9536 -11.9707 -1.0648 41 1 0.6976 -12.0417 -0.3640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784452935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:42 Heat of formation + Delta-G solvation = -115.971960 kcal Electronic energy + Delta-G solvation = -22989.008762 eV Core-core repulsion = 19483.168058 eV Total energy + Delta-G solvation = -3505.840704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22450 -39.69616 -36.66963 -35.29389 -34.85412 -32.96442 -32.12576 -31.36366 -29.50624 -28.82915 -25.20417 -24.15968 -23.80072 -23.19000 -21.26588 -20.74257 -19.35341 -18.12341 -17.49650 -16.73464 -16.40784 -15.91337 -15.76000 -15.42327 -14.92480 -14.48402 -14.29364 -14.06407 -13.85201 -13.74900 -13.45846 -13.23252 -12.97483 -12.52135 -12.30281 -12.22576 -12.17702 -11.75938 -11.45038 -11.17397 -11.09346 -10.99175 -10.62211 -10.55439 -10.28321 -9.93187 -9.73303 -9.49722 -9.24560 -8.72201 -8.43315 -8.16155 -6.06543 -4.09065 2.90258 3.02095 3.33554 3.37074 3.40784 3.55898 3.63625 4.16948 4.22102 4.39207 4.43083 4.50620 4.57024 4.75502 4.85844 4.95452 5.12047 5.14736 5.23144 5.30471 5.31137 5.36053 5.54657 5.54988 5.66778 5.78377 5.84689 6.01803 6.30545 6.43819 6.61935 6.77256 6.80931 7.03919 7.21119 7.58678 7.66452 7.92603 8.27773 8.40583 8.95031 9.01509 9.55445 11.05145 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040433 B = 0.003007 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.332579 B = 9309.680625 C = 9702.128162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.739 5.739 12 C 0.704 3.296 13 O -0.596 6.596 14 N -0.636 5.636 15 C 0.119 3.881 16 C -0.135 4.135 17 C 0.260 3.740 18 C -0.151 4.151 19 C 0.139 3.861 20 O -0.378 6.378 21 C 0.020 3.980 22 C 0.014 3.986 23 O -0.365 6.365 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.392 0.608 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -25.187 0.266 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.394 5.394 12 C 0.405 3.595 13 O -0.475 6.475 14 N -0.375 5.375 15 C -0.005 4.005 16 C -0.173 4.173 17 C 0.183 3.817 18 C -0.190 4.190 19 C 0.015 3.985 20 O -0.299 6.299 21 C -0.057 4.057 22 C -0.062 4.062 23 O -0.285 6.285 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.228 0.772 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.608 -24.844 0.337 25.107 hybrid contribution -0.227 0.649 0.039 0.689 sum -3.835 -24.194 0.375 24.499 Atomic orbital electron populations 1.69946 1.06084 1.26943 1.50419 1.24994 0.94893 0.99378 0.95019 0.86569 0.79507 0.82646 0.78782 1.20110 1.21275 1.20116 1.21020 0.93244 0.90369 1.51314 0.92260 1.19316 0.94253 0.91078 0.97761 1.21604 0.95670 0.80455 1.00654 1.45712 1.09895 1.05326 1.78483 1.15956 0.85324 0.80409 0.77812 1.90867 1.12050 1.86187 1.58385 1.47279 1.05805 1.05609 1.78765 1.21511 0.80366 0.99762 0.98893 1.22244 1.01364 0.92848 1.00882 1.23286 0.93371 0.89798 0.75200 1.22527 0.93849 1.00971 1.01644 1.21270 0.98041 0.81759 0.97406 1.88921 1.76067 1.33851 1.31024 1.24182 0.98237 0.91234 0.92005 1.24376 1.01578 0.82923 0.97345 1.89289 1.90374 1.19654 1.29202 0.92820 0.95992 0.96010 0.92709 0.92835 0.77220 0.89550 0.90530 0.89589 0.89365 0.90257 0.89679 0.91289 0.88378 0.90597 0.88361 0.87370 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 3.07 5.62 -4.04 -0.02 3.05 16 11 N -0.74 -13.78 5.47 -65.22 -0.36 -14.14 16 12 C 0.70 13.11 8.29 -86.91 -0.72 12.39 16 13 O -0.60 -13.24 15.76 5.29 0.08 -13.16 16 14 N -0.64 -9.18 2.97 -178.49 -0.53 -9.71 16 15 C 0.12 1.38 6.15 -3.71 -0.02 1.35 16 16 C -0.13 -1.42 5.50 -26.63 -0.15 -1.57 16 17 C 0.26 2.71 1.03 -26.74 -0.03 2.68 16 18 C -0.15 -1.61 5.45 -26.62 -0.15 -1.76 16 19 C 0.14 1.74 6.21 -3.70 -0.02 1.72 16 20 O -0.38 -3.89 10.87 -59.04 -0.64 -4.53 16 21 C 0.02 0.13 8.08 38.17 0.31 0.44 16 22 C 0.01 0.09 7.91 38.17 0.30 0.39 16 23 O -0.36 -3.59 9.74 -59.04 -0.58 -4.17 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.39 6.40 5.96 -40.82 -0.24 6.16 16 30 H 0.09 0.97 5.64 -51.93 -0.29 0.68 16 31 H 0.08 0.85 7.82 -51.93 -0.41 0.44 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.80 7.82 -51.93 -0.41 0.40 16 37 H 0.10 1.37 6.99 -51.93 -0.36 1.01 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -33.55 330.84 -8.70 -42.24 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.33 Total: 1.99 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.05 Total: 5.52 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.15 Total: -49.43 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.13 Total: -21.86 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.55 -8.70 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784452935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.729 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds