Wall clock time and date at job start Tue Mar 31 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48505 * 109.47289 * 240.00124 * 3 2 1 5 5 H 1.48498 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46859 * 120.00067 * 3 2 1 7 7 C 1.37883 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99426 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46650 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46710 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99637 * 180.02562 * 11 10 9 13 13 O 1.21584 * 120.00013 * 4.97644 * 12 11 10 14 14 N 1.34775 * 119.99717 * 184.97919 * 12 11 10 15 15 C 1.46917 * 120.61017 * 354.48512 * 14 12 11 16 16 C 1.53210 * 108.78116 * 234.04758 * 15 14 12 17 17 C 1.52987 * 109.28505 * 305.59240 * 16 15 14 18 18 C 1.53001 * 109.89912 * 61.02699 * 17 16 15 19 19 C 1.46924 * 120.60553 * 174.76351 * 14 12 11 20 20 O 1.43309 * 109.64467 * 181.58439 * 17 16 15 21 21 C 1.44218 * 107.25918 * 120.35388 * 20 17 16 22 22 C 1.54921 * 103.08022 * 21.40311 * 21 20 17 23 23 O 1.43700 * 109.41299 * 300.90378 * 17 16 15 24 24 H 0.96999 * 120.00083 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47314 * 60.00872 * 9 7 2 26 26 H 1.08996 * 109.47651 * 300.00112 * 9 7 2 27 27 H 1.08995 * 109.47464 * 60.00220 * 10 9 7 28 28 H 1.09007 * 109.47083 * 299.99798 * 10 9 7 29 29 H 0.96990 * 120.00346 * 359.97438 * 11 10 9 30 30 H 1.09003 * 109.58210 * 353.83534 * 15 14 12 31 31 H 1.08995 * 109.58892 * 114.25388 * 15 14 12 32 32 H 1.08997 * 109.50066 * 185.65046 * 16 15 14 33 33 H 1.08997 * 109.53123 * 65.55530 * 16 15 14 34 34 H 1.08993 * 109.50375 * 179.01035 * 18 17 16 35 35 H 1.09003 * 109.52835 * 58.91564 * 18 17 16 36 36 H 1.08999 * 109.58832 * 245.73001 * 19 14 12 37 37 H 1.08998 * 109.58292 * 6.15688 * 19 14 12 38 38 H 1.08997 * 110.69367 * 263.00402 * 21 20 17 39 39 H 1.09001 * 110.83771 * 139.86759 * 21 20 17 40 40 H 1.09004 * 110.97203 * 206.35980 * 22 21 20 41 41 H 1.09003 * 111.00795 * 82.59790 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.3990 -6.1000 0.0915 14 7 1.5166 -7.2630 -0.1026 15 6 0.0476 -7.2844 -0.0935 16 6 -0.4249 -8.2469 1.0009 17 6 0.2268 -9.6144 0.7870 18 6 1.7487 -9.4858 0.8771 19 6 2.2419 -8.5354 -0.2187 20 8 -0.2386 -10.5313 1.7852 21 6 -0.8807 -11.6238 1.0966 22 6 -0.2729 -11.5469 -0.3264 23 8 -0.1335 -10.1175 -0.5100 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.5428 -4.9308 -0.0011 30 1 -0.3310 -6.2831 0.1121 31 1 -0.3189 -7.6241 -1.0621 32 1 -1.5090 -8.3488 0.9526 33 1 -0.1393 -7.8565 1.9777 34 1 2.2054 -10.4661 0.7413 35 1 2.0236 -9.0884 1.8542 36 1 2.0522 -8.9762 -1.1974 37 1 3.3106 -8.3593 -0.0960 38 1 -1.9601 -11.4765 1.0628 39 1 -0.6376 -12.5758 1.5683 40 1 -0.9536 -11.9707 -1.0648 41 1 0.6976 -12.0417 -0.3640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784452935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:41 Heat of formation + Delta-G solvation = -139.260761 kcal Electronic energy + Delta-G solvation = -22990.018640 eV Core-core repulsion = 19483.168058 eV Total energy + Delta-G solvation = -3506.850582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04981 -40.97057 -37.83434 -36.61045 -35.98410 -34.88914 -33.23723 -32.40705 -31.15200 -29.65412 -26.90634 -25.40363 -24.67469 -23.92314 -22.96435 -22.01947 -20.58368 -19.36928 -18.50708 -18.12190 -17.46111 -17.20814 -16.84122 -16.53450 -16.49364 -15.72648 -15.56381 -15.42297 -14.89070 -14.72999 -14.45965 -14.44303 -14.25622 -13.91579 -13.50627 -13.25788 -13.15231 -12.90860 -12.85008 -12.59601 -12.52492 -12.33260 -12.22571 -11.94884 -11.66050 -11.47692 -11.18759 -11.10393 -10.59192 -10.52868 -10.20199 -9.55573 -8.22927 -6.33289 1.42508 1.45280 1.52675 1.62459 2.07128 2.41558 2.43564 2.87406 2.97503 3.11770 3.55657 3.62008 3.75366 3.93756 4.08970 4.13639 4.23192 4.25768 4.36760 4.43664 4.52293 4.52378 4.66702 4.68467 4.73763 4.77875 4.82173 4.86882 4.95343 5.03028 5.12847 5.30314 5.46699 5.53264 5.59636 5.78908 5.90584 6.11243 6.17851 6.79320 6.94715 7.35785 7.52198 8.88892 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040433 B = 0.003007 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.332579 B = 9309.680625 C = 9702.128162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.701 3.299 13 O -0.636 6.636 14 N -0.628 5.628 15 C 0.117 3.883 16 C -0.133 4.133 17 C 0.263 3.737 18 C -0.145 4.145 19 C 0.138 3.862 20 O -0.396 6.396 21 C 0.014 3.986 22 C 0.010 3.990 23 O -0.379 6.379 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.404 0.596 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 -26.368 -0.026 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.035 3.965 11 N -0.391 5.391 12 C 0.402 3.598 13 O -0.518 6.518 14 N -0.365 5.365 15 C -0.006 4.006 16 C -0.171 4.171 17 C 0.186 3.814 18 C -0.183 4.183 19 C 0.015 3.985 20 O -0.318 6.318 21 C -0.062 4.062 22 C -0.065 4.065 23 O -0.300 6.300 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.242 0.758 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.188 -26.083 0.041 26.417 hybrid contribution -0.127 0.879 0.118 0.896 sum -4.315 -25.204 0.158 25.571 Atomic orbital electron populations 1.70050 1.07525 1.28074 1.50927 1.25868 0.95807 1.03062 0.94374 0.85496 0.78305 0.78102 0.79127 1.19313 1.20533 1.19390 1.21435 0.93618 0.91872 1.51678 0.92270 1.19114 0.94192 0.91611 0.96314 1.21105 0.94679 0.81053 0.99629 1.45425 1.10361 1.04504 1.78794 1.16061 0.84896 0.81199 0.77617 1.90836 1.13880 1.86904 1.60173 1.47334 1.07127 1.04840 1.77222 1.21693 0.78361 1.00426 1.00120 1.22208 1.02333 0.92861 0.99723 1.23115 0.92706 0.89826 0.75798 1.22445 0.94713 1.01194 0.99985 1.21389 0.96990 0.81169 0.98951 1.88903 1.76451 1.34821 1.31631 1.24448 0.98561 0.91074 0.92086 1.24640 1.02795 0.81278 0.97826 1.89267 1.90353 1.21696 1.28673 0.92515 0.97261 0.97384 0.93864 0.93724 0.75814 0.89395 0.89289 0.88034 0.90360 0.88302 0.91063 0.89867 0.90141 0.89804 0.86240 0.85102 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.30 5.09 29.85 0.15 1.45 16 10 C 0.16 7.20 5.62 86.38 0.49 7.69 16 11 N -0.73 -27.67 5.47 -478.51 -2.62 -30.28 16 12 C 0.70 26.34 8.29 179.05 1.48 27.82 16 13 O -0.64 -28.83 15.76 -3.98 -0.06 -28.90 16 14 N -0.63 -17.85 2.97 -836.88 -2.48 -20.34 16 15 C 0.12 2.58 6.15 86.37 0.53 3.11 16 16 C -0.13 -2.62 5.50 30.66 0.17 -2.45 16 17 C 0.26 5.00 1.03 30.59 0.03 5.04 16 18 C -0.14 -2.92 5.45 30.66 0.17 -2.76 16 19 C 0.14 3.37 6.21 86.37 0.54 3.90 16 20 O -0.40 -7.40 10.87 -126.22 -1.37 -8.77 16 21 C 0.01 0.15 8.08 72.64 0.59 0.73 16 22 C 0.01 0.10 7.91 72.64 0.57 0.67 16 23 O -0.38 -6.53 9.74 -126.22 -1.23 -7.76 16 24 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 25 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 2.08 8.14 -2.38 -0.02 2.07 16 29 H 0.40 13.19 5.96 -92.72 -0.55 12.64 16 30 H 0.09 1.90 5.64 -2.39 -0.01 1.88 16 31 H 0.09 1.80 7.82 -2.39 -0.02 1.78 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.81 7.82 -2.39 -0.02 1.79 16 37 H 0.08 2.27 6.99 -2.39 -0.02 2.25 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -71.73 330.84 0.44 -71.30 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.47 Total: 17.82 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 5.41 Total: 15.27 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -4.82 Total: -105.00 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -2.66 Total: -45.42 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.73 0.44 -71.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784452935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.963 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds