Wall clock time and date at job start Tue Mar 31 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47330 * 2 1 4 4 C 1.52997 * 109.46995 * 239.99191 * 2 1 3 5 5 O 1.45204 * 109.46548 * 119.99577 * 2 1 3 6 6 C 1.34640 * 117.00139 * 60.00273 * 5 2 1 7 7 O 1.21511 * 119.99623 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00224 * 179.97438 * 6 5 2 9 9 C 1.47064 * 136.05538 * 359.94788 * 8 6 5 10 10 C 1.53609 * 88.00297 * 207.10467 * 9 8 6 11 11 C 1.47057 * 136.05735 * 179.97438 * 8 6 5 12 12 H 1.09002 * 113.47339 * 267.68310 * 11 8 6 13 13 C 1.50703 * 113.47106 * 38.06811 * 11 8 6 14 14 O 1.21283 * 119.99488 * 359.58514 * 13 11 8 15 15 N 1.34777 * 120.00290 * 179.58954 * 13 11 8 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 11 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 H 1.07997 * 120.00357 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47186 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46905 * 119.99897 * 21 19 17 24 24 H 1.48494 * 109.47159 * 240.00164 * 21 19 17 25 25 H 1.09001 * 109.47379 * 300.00615 * 1 2 3 26 26 H 1.09006 * 109.46758 * 60.00151 * 1 2 3 27 27 H 1.08995 * 109.47564 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47175 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47076 * 299.99654 * 3 2 1 30 30 H 1.09001 * 109.47391 * 59.99392 * 3 2 1 31 31 H 1.08992 * 109.47946 * 300.00350 * 4 2 1 32 32 H 1.09006 * 109.46830 * 60.00702 * 4 2 1 33 33 H 1.09000 * 109.47076 * 180.02562 * 4 2 1 34 34 H 1.08998 * 113.46892 * 321.94228 * 9 8 6 35 35 H 1.09005 * 113.46289 * 92.31414 * 9 8 6 36 36 H 1.09004 * 114.23299 * 220.41029 * 10 9 8 37 37 H 1.08995 * 114.20425 * 87.55334 * 10 9 8 38 38 H 0.97001 * 119.99727 * 359.97438 * 15 13 11 39 39 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 40 40 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 41 41 H 0.96999 * 120.00067 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5041 8 7 2.0678 -2.6656 2.4169 9 6 2.8935 -2.3866 3.6014 10 6 3.2454 -3.8813 3.6418 11 6 1.8956 -4.0343 2.9267 12 1 1.0524 -4.1405 3.6092 13 6 1.9051 -5.0833 1.8448 14 8 2.0383 -4.7565 0.6845 15 7 1.7654 -6.3846 2.1667 16 6 1.7807 -7.4049 1.1155 17 6 1.6142 -8.7680 1.7361 18 1 1.5081 -8.8648 2.8065 19 6 1.5974 -9.8918 0.9373 20 7 1.7271 -9.7741 -0.3661 21 14 1.3918 -11.5816 1.7066 22 1 1.2674 -11.4429 3.1799 23 1 0.1683 -12.2261 1.1656 24 1 2.5755 -12.4188 1.3859 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2076 -2.1392 33 1 3.1300 -0.7218 -1.2489 34 1 3.7489 -1.7440 3.3927 35 1 2.3165 -2.0529 4.4639 36 1 3.2706 -4.3081 4.6445 37 1 4.1074 -4.1541 3.0332 38 1 1.6592 -6.6460 3.0948 39 1 0.9632 -7.2207 0.4185 40 1 2.7300 -7.3623 0.5815 41 1 1.7157 -10.5646 -0.9280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787627897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:27 Heat of formation + Delta-G solvation = -76.944953 kcal Electronic energy + Delta-G solvation = -23129.823150 eV Core-core repulsion = 19625.674784 eV Total energy + Delta-G solvation = -3504.148366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88350 -39.66299 -37.61577 -36.23504 -34.10304 -33.92056 -32.28949 -29.76749 -28.01125 -27.45174 -27.32549 -26.13812 -23.16501 -22.66716 -20.99312 -19.95762 -18.97973 -17.99519 -17.37656 -16.51695 -16.05583 -15.54044 -15.37532 -14.88238 -14.59015 -14.29062 -14.09156 -13.87537 -13.53151 -13.10122 -12.83637 -12.63559 -12.53700 -12.19440 -12.03907 -11.89295 -11.83747 -11.74778 -11.66304 -11.36231 -11.16790 -11.13817 -10.93079 -10.86726 -10.29890 -10.24196 -9.71487 -9.34800 -9.08805 -8.70845 -8.51898 -7.81814 -6.13926 -4.20867 2.01487 3.15175 3.24877 3.31581 3.34045 3.35138 3.82487 4.13400 4.22854 4.38942 4.71609 4.74157 4.82473 4.90129 5.04726 5.16053 5.22029 5.26632 5.33537 5.39642 5.49987 5.58394 5.62365 5.64211 5.71841 5.82899 5.89159 5.95601 6.03777 6.31456 6.47957 6.64816 7.35251 7.48438 7.56818 7.68856 7.84614 8.00201 8.62721 8.67757 8.82622 9.16112 9.45760 10.96317 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.003606 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.122761 B = 7763.774818 C = 8440.846796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.138 4.138 4 C -0.185 4.185 5 O -0.368 6.368 6 C 0.677 3.323 7 O -0.529 6.529 8 N -0.621 5.621 9 C 0.106 3.894 10 C -0.139 4.139 11 C 0.134 3.866 12 H 0.113 0.887 13 C 0.486 3.514 14 O -0.516 6.516 15 N -0.711 5.711 16 C 0.252 3.748 17 C -0.541 4.541 18 H 0.064 0.936 19 C 0.062 3.938 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.389 0.611 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 19.813 8.768 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.195 4.195 4 C -0.242 4.242 5 O -0.284 6.284 6 C 0.433 3.567 7 O -0.414 6.414 8 N -0.365 5.365 9 C -0.017 4.017 10 C -0.178 4.178 11 C 0.028 3.972 12 H 0.131 0.869 13 C 0.268 3.732 14 O -0.391 6.391 15 N -0.361 5.361 16 C 0.131 3.869 17 C -0.580 4.580 18 H 0.082 0.918 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.221 0.779 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.733 19.962 7.160 21.278 hybrid contribution -0.290 -1.065 0.683 1.298 sum 1.443 18.898 7.842 20.511 Atomic orbital electron populations 1.22513 0.94219 1.05210 1.02067 1.22015 0.94227 0.91256 0.82499 1.21835 1.02130 0.92730 1.02793 1.22525 1.01518 1.04088 0.96069 1.86249 1.72224 1.23706 1.46190 1.17188 0.78714 0.79807 0.81002 1.90992 1.39663 1.69345 1.41366 1.47813 1.55165 1.12823 1.20693 1.22963 0.94240 0.97253 0.87228 1.23476 0.96497 0.95905 1.01873 1.22705 0.99671 0.81295 0.93571 0.86911 1.20313 0.79182 0.83864 0.89829 1.90775 1.48030 1.80909 1.19432 1.46378 1.71973 1.05891 1.11898 1.19080 0.97681 0.84086 0.86008 1.21262 1.52138 0.90735 0.93847 0.91818 1.24968 0.94815 0.99562 0.94768 1.69994 1.48684 1.29964 1.03603 0.86362 0.77805 0.83449 0.79287 1.19616 1.20843 1.20836 0.92452 0.91292 0.89247 0.91604 0.90292 0.91721 0.88751 0.91440 0.92309 0.89965 0.89480 0.87939 0.87973 0.77853 0.95582 0.95667 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 8.37 37.16 0.31 -1.99 16 2 C 0.14 1.78 1.13 -90.62 -0.10 1.68 16 3 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 4 C -0.18 -2.59 8.37 37.16 0.31 -2.28 16 5 O -0.37 -5.66 9.91 -40.33 -0.40 -6.06 16 6 C 0.68 12.23 7.83 54.06 0.42 12.65 16 7 O -0.53 -11.43 10.47 -26.60 -0.28 -11.71 16 8 N -0.62 -9.58 3.48 -184.45 -0.64 -10.22 16 9 C 0.11 1.04 8.64 -8.46 -0.07 0.97 16 10 C -0.14 -1.41 8.02 -26.15 -0.21 -1.62 16 11 C 0.13 1.94 4.46 -73.55 -0.33 1.61 16 12 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.49 10.06 7.32 -10.98 -0.08 9.98 16 14 O -0.52 -13.38 14.23 -16.34 -0.23 -13.62 16 15 N -0.71 -15.02 5.55 -61.47 -0.34 -15.36 16 16 C 0.25 6.81 5.43 -5.19 -0.03 6.78 16 17 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 18 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -26.47 13.29 55.43 0.74 -25.73 16 21 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.42 5.88 -51.93 -0.31 1.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.72 5.88 -51.93 -0.31 1.41 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 38 H 0.39 6.78 8.32 -40.82 -0.34 6.44 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -36.72 340.91 -7.31 -44.03 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.40 Total: 4.20 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 0.14 Total: 13.42 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.25 Total: -51.31 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.91 Total: -31.38 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.72 -7.31 -44.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.916 kcal (2) G-P(sol) polarization free energy of solvation -36.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds