Wall clock time and date at job start Tue Mar 31 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47330 * 2 1 4 4 C 1.52997 * 109.46995 * 239.99191 * 2 1 3 5 5 O 1.45204 * 109.46548 * 119.99577 * 2 1 3 6 6 C 1.34640 * 117.00139 * 60.00273 * 5 2 1 7 7 O 1.21511 * 119.99623 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00224 * 179.97438 * 6 5 2 9 9 C 1.47064 * 136.05538 * 359.94788 * 8 6 5 10 10 C 1.53609 * 88.00297 * 207.10467 * 9 8 6 11 11 C 1.47057 * 136.05735 * 179.97438 * 8 6 5 12 12 H 1.09002 * 113.47339 * 267.68310 * 11 8 6 13 13 C 1.50703 * 113.47106 * 38.06811 * 11 8 6 14 14 O 1.21283 * 119.99488 * 359.58514 * 13 11 8 15 15 N 1.34777 * 120.00290 * 179.58954 * 13 11 8 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 11 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 H 1.07997 * 120.00357 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99860 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47186 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46905 * 119.99897 * 21 19 17 24 24 H 1.48494 * 109.47159 * 240.00164 * 21 19 17 25 25 H 1.09001 * 109.47379 * 300.00615 * 1 2 3 26 26 H 1.09006 * 109.46758 * 60.00151 * 1 2 3 27 27 H 1.08995 * 109.47564 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47175 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47076 * 299.99654 * 3 2 1 30 30 H 1.09001 * 109.47391 * 59.99392 * 3 2 1 31 31 H 1.08992 * 109.47946 * 300.00350 * 4 2 1 32 32 H 1.09006 * 109.46830 * 60.00702 * 4 2 1 33 33 H 1.09000 * 109.47076 * 180.02562 * 4 2 1 34 34 H 1.08998 * 113.46892 * 321.94228 * 9 8 6 35 35 H 1.09005 * 113.46289 * 92.31414 * 9 8 6 36 36 H 1.09004 * 114.23299 * 220.41029 * 10 9 8 37 37 H 1.08995 * 114.20425 * 87.55334 * 10 9 8 38 38 H 0.97001 * 119.99727 * 359.97438 * 15 13 11 39 39 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 40 40 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 41 41 H 0.96999 * 120.00067 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5041 8 7 2.0678 -2.6656 2.4169 9 6 2.8935 -2.3866 3.6014 10 6 3.2454 -3.8813 3.6418 11 6 1.8956 -4.0343 2.9267 12 1 1.0524 -4.1405 3.6092 13 6 1.9051 -5.0833 1.8448 14 8 2.0383 -4.7565 0.6845 15 7 1.7654 -6.3846 2.1667 16 6 1.7807 -7.4049 1.1155 17 6 1.6142 -8.7680 1.7361 18 1 1.5081 -8.8648 2.8065 19 6 1.5974 -9.8918 0.9373 20 7 1.7271 -9.7741 -0.3661 21 14 1.3918 -11.5816 1.7066 22 1 1.2674 -11.4429 3.1799 23 1 0.1683 -12.2261 1.1656 24 1 2.5755 -12.4188 1.3859 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2076 -2.1392 33 1 3.1300 -0.7218 -1.2489 34 1 3.7489 -1.7440 3.3927 35 1 2.3165 -2.0529 4.4639 36 1 3.2706 -4.3081 4.6445 37 1 4.1074 -4.1541 3.0332 38 1 1.6592 -6.6460 3.0948 39 1 0.9632 -7.2207 0.4185 40 1 2.7300 -7.3623 0.5815 41 1 1.7157 -10.5646 -0.9280 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787627897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:26 Heat of formation + Delta-G solvation = -105.083442 kcal Electronic energy + Delta-G solvation = -23131.043327 eV Core-core repulsion = 19625.674784 eV Total energy + Delta-G solvation = -3505.368543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.09647 -40.93314 -39.16659 -37.50309 -36.11088 -35.02297 -34.34574 -30.95677 -29.74635 -28.41372 -28.30664 -27.63938 -24.67693 -24.16566 -22.21880 -21.44953 -20.24255 -19.44267 -18.69506 -17.90937 -17.68523 -17.03105 -16.87476 -16.33996 -16.16696 -15.81692 -15.29531 -15.05995 -14.99182 -14.26218 -14.21195 -14.06737 -13.82791 -13.60539 -13.32361 -13.13405 -12.90914 -12.88890 -12.85720 -12.77595 -12.69225 -12.50263 -12.28461 -12.19855 -12.09947 -11.46042 -11.38067 -11.02227 -10.81963 -10.63641 -9.85921 -9.75651 -8.29183 -6.46584 0.89594 1.43296 1.45223 1.58809 1.73669 1.87852 2.31657 2.54131 2.89328 3.05759 3.28390 3.74360 3.77002 3.86665 3.90475 3.92748 4.18472 4.28330 4.48691 4.55766 4.56665 4.65916 4.71469 4.78836 4.85959 4.88767 4.94090 5.09817 5.11559 5.20600 5.21965 5.25743 5.34070 5.48619 5.51350 5.70337 5.83935 6.64106 6.66029 6.93418 7.23310 7.37739 7.54528 8.83630 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.003606 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.122761 B = 7763.774818 C = 8440.846796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 C -0.128 4.128 4 C -0.181 4.181 5 O -0.364 6.364 6 C 0.664 3.336 7 O -0.579 6.579 8 N -0.636 5.636 9 C 0.112 3.888 10 C -0.120 4.120 11 C 0.132 3.868 12 H 0.154 0.846 13 C 0.477 3.523 14 O -0.578 6.578 15 N -0.702 5.702 16 C 0.270 3.730 17 C -0.551 4.551 18 H 0.090 0.910 19 C -0.001 4.001 20 N -0.935 5.935 21 Si 0.989 3.011 22 H -0.247 1.247 23 H -0.282 1.282 24 H -0.279 1.279 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.155 0.845 37 H 0.081 0.919 38 H 0.411 0.589 39 H -0.024 1.024 40 H -0.017 1.017 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 20.851 12.596 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 C -0.185 4.185 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.421 3.579 7 O -0.467 6.467 8 N -0.380 5.380 9 C -0.008 4.008 10 C -0.157 4.157 11 C 0.026 3.974 12 H 0.171 0.829 13 C 0.262 3.738 14 O -0.457 6.457 15 N -0.353 5.353 16 C 0.147 3.853 17 C -0.589 4.589 18 H 0.108 0.892 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.812 3.188 22 H -0.170 1.170 23 H -0.208 1.208 24 H -0.205 1.205 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.147 0.853 36 H 0.172 0.828 37 H 0.100 0.900 38 H 0.248 0.752 39 H -0.006 1.006 40 H 0.001 0.999 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.088 21.039 11.090 23.874 hybrid contribution -0.378 -1.328 -0.574 1.495 sum 1.710 19.711 10.515 22.406 Atomic orbital electron populations 1.22444 0.94069 1.03064 1.03855 1.22419 0.94638 0.92944 0.81179 1.21844 1.02350 0.89699 1.04638 1.22466 1.01319 1.01734 0.98310 1.86257 1.72102 1.22490 1.47103 1.17607 0.78515 0.80436 0.81376 1.90977 1.41916 1.70453 1.43383 1.48236 1.55271 1.13085 1.21412 1.23335 0.94262 0.97167 0.86030 1.23538 0.92638 0.96310 1.03251 1.23119 1.04079 0.78577 0.91611 0.82878 1.21603 0.76866 0.84511 0.90770 1.90757 1.50312 1.81835 1.22747 1.46059 1.72103 1.05458 1.11695 1.18466 0.93531 0.86527 0.86766 1.21663 1.51662 0.90445 0.95119 0.89174 1.26167 0.93989 1.04780 0.95103 1.70177 1.49933 1.31536 1.05759 0.85048 0.77535 0.76839 0.79392 1.17023 1.20766 1.20456 0.91092 0.88990 0.93274 0.91254 0.87872 0.90412 0.93665 0.88867 0.92439 0.88985 0.85278 0.82759 0.90039 0.75231 1.00633 0.99903 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.48 8.37 71.98 0.60 -3.87 16 2 C 0.12 3.22 1.13 -10.80 -0.01 3.21 16 3 C -0.13 -2.06 8.85 71.98 0.64 -1.42 16 4 C -0.18 -5.33 8.37 71.98 0.60 -4.73 16 5 O -0.36 -11.20 9.91 -55.50 -0.55 -11.75 16 6 C 0.66 24.76 7.83 129.79 1.02 25.78 16 7 O -0.58 -27.00 10.47 26.81 0.28 -26.72 16 8 N -0.64 -19.04 3.48 -967.88 -3.37 -22.41 16 9 C 0.11 1.78 8.64 83.21 0.72 2.49 16 10 C -0.12 -1.99 8.02 30.97 0.25 -1.74 16 11 C 0.13 3.60 4.46 41.05 0.18 3.78 16 12 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 13 C 0.48 20.42 7.32 87.66 0.64 21.07 16 14 O -0.58 -32.29 14.23 17.89 0.25 -32.03 16 15 N -0.70 -30.28 5.55 -466.79 -2.59 -32.87 16 16 C 0.27 15.47 5.43 85.63 0.46 15.93 16 17 C -0.55 -30.36 9.28 25.60 0.24 -30.12 16 18 H 0.09 4.38 7.60 -2.91 -0.02 4.36 16 19 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 20 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 21 Si 0.99 42.69 29.54 68.60 2.03 44.72 16 22 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.05 1.67 5.88 -2.39 -0.01 1.66 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 1.80 5.88 -2.39 -0.01 1.79 16 32 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.15 1.07 8.14 -2.38 -0.02 1.06 16 37 H 0.08 1.75 8.11 -2.39 -0.02 1.73 16 38 H 0.41 13.80 8.32 -92.71 -0.77 13.03 16 39 H -0.02 -1.61 8.14 -2.38 -0.02 -1.63 16 40 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -90.77 340.91 2.40 -88.37 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.26 Total: 19.86 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 5.80 Total: 30.75 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -5.67 Total: -113.20 kcal Atomic # 8 Polarization: -70.49 SS G_CDS: -0.01 Total: -70.50 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -90.77 2.40 -88.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.714 kcal (2) G-P(sol) polarization free energy of solvation -90.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds