Wall clock time and date at job start Tue Mar 31 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99825 * 3 2 1 5 5 H 1.48489 * 109.47350 * 29.99828 * 3 2 1 6 6 H 1.48498 * 109.47064 * 150.00169 * 3 2 1 7 7 C 1.37883 * 119.99348 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99623 * 173.75454 * 7 2 1 9 9 C 1.50703 * 120.00399 * 353.74601 * 7 2 1 10 10 O 1.45207 * 112.84464 * 62.61613 * 9 7 2 11 11 C 1.34225 * 116.99515 * 65.18927 * 10 9 7 12 12 O 1.20821 * 120.00358 * 357.70370 * 11 10 9 13 13 C 1.50699 * 119.99690 * 177.69679 * 11 10 9 14 14 C 1.52998 * 109.47357 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47177 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47177 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.47740 * 179.97438 * 16 15 14 18 18 C 1.34771 * 120.00767 * 179.97438 * 17 16 15 19 19 N 1.34775 * 120.00557 * 180.02562 * 18 17 16 20 20 O 1.21592 * 119.99430 * 0.02562 * 18 17 16 21 21 C 1.53780 * 113.61617 * 193.81490 * 9 7 2 22 22 C 1.53953 * 87.01850 * 89.22915 * 21 9 7 23 23 C 1.53778 * 113.61310 * 291.42607 * 9 7 2 24 24 H 0.97001 * 119.99179 * 5.02436 * 1 2 3 25 25 H 1.09009 * 109.47142 * 60.00326 * 13 11 10 26 26 H 1.08999 * 109.47521 * 300.00914 * 13 11 10 27 27 H 1.09001 * 109.46989 * 300.00244 * 14 13 11 28 28 H 1.08998 * 109.47447 * 60.00205 * 14 13 11 29 29 H 1.09001 * 109.46910 * 299.99741 * 15 14 13 30 30 H 1.08999 * 109.47649 * 59.99826 * 15 14 13 31 31 H 1.08999 * 109.47255 * 300.00163 * 16 15 14 32 32 H 1.09008 * 109.47497 * 59.99581 * 16 15 14 33 33 H 0.97004 * 119.99047 * 0.02562 * 17 16 15 34 34 H 0.97004 * 119.99258 * 0.02562 * 19 18 17 35 35 H 0.96993 * 120.00506 * 179.97438 * 19 18 17 36 36 H 1.08996 * 113.61197 * 203.75266 * 21 9 7 37 37 H 1.08998 * 113.61274 * 334.65375 * 21 9 7 38 38 H 1.08995 * 113.53971 * 270.80742 * 22 21 9 39 39 H 1.09000 * 113.73988 * 139.94514 * 22 21 9 40 40 H 1.08995 * 113.62148 * 25.34231 * 23 9 7 41 41 H 1.08996 * 113.61510 * 156.16912 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0797 -1.1970 -0.1023 9 6 1.2576 -2.4955 0.1411 10 8 0.3347 -2.7377 -0.9535 11 6 0.8681 -2.9148 -2.1724 12 8 2.0632 -2.8278 -2.3273 13 6 -0.0236 -3.2224 -3.3476 14 6 0.8294 -3.3769 -4.6084 15 6 -0.0761 -3.6886 -5.8017 16 6 0.7768 -3.8425 -7.0625 17 7 -0.0900 -4.1415 -8.2051 18 6 0.4454 -4.3188 -9.4291 19 7 -0.3521 -4.5934 -10.4803 20 8 1.6481 -4.2311 -9.5850 21 6 2.1654 -3.6954 0.4585 22 6 1.9586 -3.3558 1.9458 23 6 0.6317 -2.6984 1.5309 24 1 -0.4849 0.8369 -0.0736 25 1 -0.7346 -2.4080 -3.4872 26 1 -0.5653 -4.1494 -3.1600 27 1 1.3713 -2.4501 -4.7962 28 1 1.5401 -4.1915 -4.4687 29 1 -0.6183 -4.6153 -5.6140 30 1 -0.7865 -2.8738 -5.9413 31 1 1.3188 -2.9156 -7.2500 32 1 1.4877 -4.6571 -6.9233 33 1 -1.0495 -4.2111 -8.0807 34 1 -1.3116 -4.6630 -10.3559 35 1 0.0332 -4.7206 -11.3613 36 1 1.7389 -4.6549 0.1663 37 1 3.1933 -3.5671 0.1193 38 1 2.6916 -2.6505 2.3373 39 1 1.8318 -4.2314 2.5824 40 1 0.4232 -1.7664 2.0563 41 1 -0.2158 -3.3837 1.5323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788144345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:32 Heat of formation + Delta-G solvation = -115.887555 kcal Electronic energy + Delta-G solvation = -22319.874692 eV Core-core repulsion = 18814.037648 eV Total energy + Delta-G solvation = -3505.837044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.96571 -39.27889 -37.28845 -36.00499 -34.19083 -33.98083 -33.14904 -32.27916 -29.19254 -26.19547 -24.64611 -24.49241 -22.81380 -21.49482 -21.19006 -19.48770 -18.53936 -18.39635 -17.48123 -16.85362 -16.12416 -15.46294 -15.29744 -15.14545 -14.94953 -14.72580 -14.36140 -14.25034 -13.86736 -13.14026 -12.91102 -12.35524 -12.15573 -11.64476 -11.58377 -11.49897 -11.13313 -11.03082 -10.94149 -10.85261 -10.51721 -10.49366 -10.37815 -10.27283 -9.96158 -9.87393 -9.79433 -9.22778 -9.18795 -8.76584 -8.52794 -8.48876 -6.10140 -4.21508 2.70464 3.02669 3.26930 3.33468 3.38099 3.57177 4.04294 4.27663 4.36223 4.78987 4.94013 5.15104 5.27175 5.47192 5.49899 5.64810 5.74282 5.78848 5.84482 5.89258 5.95145 5.97708 6.25959 6.28220 6.36780 6.46114 6.47275 6.51045 6.56811 6.64703 6.65478 6.93018 7.11622 7.30339 7.56914 7.72920 7.80546 7.99791 8.40133 8.41456 8.82440 9.28536 9.48971 10.94245 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.003215 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.095282 B = 8705.891634 C = 9377.586474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.241 3.759 10 O -0.346 6.346 11 C 0.458 3.542 12 O -0.514 6.514 13 C -0.116 4.116 14 C -0.103 4.103 15 C -0.129 4.129 16 C 0.135 3.865 17 N -0.745 5.745 18 C 0.702 3.298 19 N -0.870 5.870 20 O -0.595 6.595 21 C -0.158 4.158 22 C -0.132 4.132 23 C -0.109 4.109 24 H 0.262 0.738 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.396 0.604 34 H 0.396 0.604 35 H 0.413 0.587 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.784 -8.714 -12.238 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.262 6.262 11 C 0.300 3.700 12 O -0.404 6.404 13 C -0.154 4.154 14 C -0.141 4.141 15 C -0.167 4.167 16 C 0.011 3.989 17 N -0.401 5.401 18 C 0.400 3.600 19 N -0.439 5.439 20 O -0.473 6.473 21 C -0.196 4.196 22 C -0.170 4.170 23 C -0.147 4.147 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.230 0.770 34 H 0.223 0.777 35 H 0.245 0.755 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.523 -8.443 -12.087 15.744 hybrid contribution -0.404 0.881 -0.362 1.035 sum -5.927 -7.562 -12.449 15.725 Atomic orbital electron populations 1.70045 1.05819 1.26941 1.47105 1.25071 0.94878 0.99284 0.93825 0.86577 0.80089 0.83019 0.78376 1.20494 1.21027 1.19533 1.20953 0.93620 0.88801 1.51628 0.91483 1.21135 0.85194 0.92136 0.80771 1.86472 1.44082 1.79139 1.16531 1.22890 0.87929 0.74030 0.85106 1.90551 1.17032 1.47031 1.85763 1.21309 0.98592 1.03775 0.91770 1.21249 0.97497 1.03717 0.91611 1.21806 0.98745 1.02444 0.93740 1.21298 0.92626 1.01760 0.83224 1.45166 1.10728 1.76947 1.07234 1.16011 0.85364 0.77744 0.80871 1.43000 1.10416 1.79659 1.10787 1.90990 1.13104 1.58737 1.84430 1.23544 1.01268 0.98529 0.96282 1.22571 0.99262 0.99400 0.95746 1.22902 0.95014 0.99832 0.96924 0.92825 0.88713 0.89260 0.90623 0.90893 0.91231 0.91102 0.91243 0.91316 0.77037 0.77666 0.75488 0.92329 0.91852 0.90265 0.93037 0.90808 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.16 12.78 55.43 0.71 -23.45 16 2 C 0.08 2.06 5.29 -17.82 -0.09 1.97 16 3 Si 0.89 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.23 7.08 -34.44 -0.24 -14.47 16 8 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 9 C 0.24 6.09 0.47 -90.96 -0.04 6.05 16 10 O -0.35 -8.66 9.76 -39.25 -0.38 -9.04 16 11 C 0.46 10.30 7.52 36.00 0.27 10.57 16 12 O -0.51 -12.87 14.43 -18.75 -0.27 -13.14 16 13 C -0.12 -1.85 5.81 -27.88 -0.16 -2.01 16 14 C -0.10 -1.41 4.50 -26.73 -0.12 -1.53 16 15 C -0.13 -1.26 5.33 -26.73 -0.14 -1.40 16 16 C 0.13 1.46 5.67 -4.04 -0.02 1.43 16 17 N -0.74 -6.69 5.56 -65.22 -0.36 -7.06 16 18 C 0.70 7.80 8.84 -86.93 -0.77 7.03 16 19 N -0.87 -5.43 8.88 27.63 0.25 -5.19 16 20 O -0.59 -9.71 17.18 5.29 0.09 -9.62 16 21 C -0.16 -3.52 6.56 -25.83 -0.17 -3.69 16 22 C -0.13 -2.67 7.81 -25.83 -0.20 -2.87 16 23 C -0.11 -2.49 7.28 -25.92 -0.19 -2.68 16 24 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 25 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 26 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 28 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 33 H 0.40 2.25 8.49 -40.82 -0.35 1.90 16 34 H 0.40 1.14 8.84 -40.82 -0.36 0.78 16 35 H 0.41 2.23 8.93 -40.82 -0.36 1.87 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.46 8.09 -51.93 -0.42 1.04 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.81 7.97 -51.93 -0.41 1.39 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -35.22 347.69 -8.16 -43.38 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.52 Total: 4.15 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.89 Total: -1.60 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.59 Total: -35.70 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.56 Total: -31.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.22 -8.16 -43.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788144345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.511 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds