Wall clock time and date at job start Tue Mar 31 2020 05:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99825 * 3 2 1 5 5 H 1.48489 * 109.47350 * 29.99828 * 3 2 1 6 6 H 1.48498 * 109.47064 * 150.00169 * 3 2 1 7 7 C 1.37883 * 119.99348 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99623 * 173.75454 * 7 2 1 9 9 C 1.50703 * 120.00399 * 353.74601 * 7 2 1 10 10 O 1.45207 * 112.84464 * 62.61613 * 9 7 2 11 11 C 1.34225 * 116.99515 * 65.18927 * 10 9 7 12 12 O 1.20821 * 120.00358 * 357.70370 * 11 10 9 13 13 C 1.50699 * 119.99690 * 177.69679 * 11 10 9 14 14 C 1.52998 * 109.47357 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47177 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47177 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.47740 * 179.97438 * 16 15 14 18 18 C 1.34771 * 120.00767 * 179.97438 * 17 16 15 19 19 N 1.34775 * 120.00557 * 180.02562 * 18 17 16 20 20 O 1.21592 * 119.99430 * 0.02562 * 18 17 16 21 21 C 1.53780 * 113.61617 * 193.81490 * 9 7 2 22 22 C 1.53953 * 87.01850 * 89.22915 * 21 9 7 23 23 C 1.53778 * 113.61310 * 291.42607 * 9 7 2 24 24 H 0.97001 * 119.99179 * 5.02436 * 1 2 3 25 25 H 1.09009 * 109.47142 * 60.00326 * 13 11 10 26 26 H 1.08999 * 109.47521 * 300.00914 * 13 11 10 27 27 H 1.09001 * 109.46989 * 300.00244 * 14 13 11 28 28 H 1.08998 * 109.47447 * 60.00205 * 14 13 11 29 29 H 1.09001 * 109.46910 * 299.99741 * 15 14 13 30 30 H 1.08999 * 109.47649 * 59.99826 * 15 14 13 31 31 H 1.08999 * 109.47255 * 300.00163 * 16 15 14 32 32 H 1.09008 * 109.47497 * 59.99581 * 16 15 14 33 33 H 0.97004 * 119.99047 * 0.02562 * 17 16 15 34 34 H 0.97004 * 119.99258 * 0.02562 * 19 18 17 35 35 H 0.96993 * 120.00506 * 179.97438 * 19 18 17 36 36 H 1.08996 * 113.61197 * 203.75266 * 21 9 7 37 37 H 1.08998 * 113.61274 * 334.65375 * 21 9 7 38 38 H 1.08995 * 113.53971 * 270.80742 * 22 21 9 39 39 H 1.09000 * 113.73988 * 139.94514 * 22 21 9 40 40 H 1.08995 * 113.62148 * 25.34231 * 23 9 7 41 41 H 1.08996 * 113.61510 * 156.16912 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0797 -1.1970 -0.1023 9 6 1.2576 -2.4955 0.1411 10 8 0.3347 -2.7377 -0.9535 11 6 0.8681 -2.9148 -2.1724 12 8 2.0632 -2.8278 -2.3273 13 6 -0.0236 -3.2224 -3.3476 14 6 0.8294 -3.3769 -4.6084 15 6 -0.0761 -3.6886 -5.8017 16 6 0.7768 -3.8425 -7.0625 17 7 -0.0900 -4.1415 -8.2051 18 6 0.4454 -4.3188 -9.4291 19 7 -0.3521 -4.5934 -10.4803 20 8 1.6481 -4.2311 -9.5850 21 6 2.1654 -3.6954 0.4585 22 6 1.9586 -3.3558 1.9458 23 6 0.6317 -2.6984 1.5309 24 1 -0.4849 0.8369 -0.0736 25 1 -0.7346 -2.4080 -3.4872 26 1 -0.5653 -4.1494 -3.1600 27 1 1.3713 -2.4501 -4.7962 28 1 1.5401 -4.1915 -4.4687 29 1 -0.6183 -4.6153 -5.6140 30 1 -0.7865 -2.8738 -5.9413 31 1 1.3188 -2.9156 -7.2500 32 1 1.4877 -4.6571 -6.9233 33 1 -1.0495 -4.2111 -8.0807 34 1 -1.3116 -4.6630 -10.3559 35 1 0.0332 -4.7206 -11.3613 36 1 1.7389 -4.6549 0.1663 37 1 3.1933 -3.5671 0.1193 38 1 2.6916 -2.6505 2.3373 39 1 1.8318 -4.2314 2.5824 40 1 0.4232 -1.7664 2.0563 41 1 -0.2158 -3.3837 1.5323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788144345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:31 Heat of formation + Delta-G solvation = -141.863290 kcal Electronic energy + Delta-G solvation = -22321.001084 eV Core-core repulsion = 18814.037648 eV Total energy + Delta-G solvation = -3506.963437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09758 -40.80871 -39.00016 -37.05100 -35.95751 -34.96112 -34.36645 -34.08477 -30.28980 -28.17471 -26.36631 -25.89914 -24.42557 -22.45604 -22.15366 -21.03732 -20.44442 -19.19040 -18.71369 -18.20516 -17.22443 -17.15221 -16.98961 -16.77610 -16.39468 -15.80719 -15.72936 -15.46305 -15.25894 -14.76267 -14.27330 -13.96897 -13.54942 -13.27585 -12.97571 -12.92758 -12.81851 -12.75425 -12.45858 -12.18602 -12.09502 -12.08161 -11.76052 -11.62654 -11.55142 -11.50620 -11.06111 -10.77551 -10.74396 -10.46555 -10.39034 -9.96692 -8.18670 -6.35731 1.34528 1.36580 1.46466 1.82784 1.95120 2.16776 2.35289 2.48828 3.12587 3.67728 3.81808 3.96385 4.01648 4.04145 4.14094 4.30955 4.36410 4.39969 4.50880 4.66970 4.76583 4.83864 4.86968 4.89732 4.95781 5.06168 5.16388 5.31630 5.37641 5.40319 5.44716 5.49983 5.64882 5.78950 5.92114 6.04476 6.08147 6.52957 6.68884 7.13247 7.32407 7.51496 7.66446 8.85090 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.003215 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.095282 B = 8705.891634 C = 9377.586474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 0.946 3.054 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.531 4.531 8 H 0.044 0.956 9 C 0.216 3.784 10 O -0.361 6.361 11 C 0.443 3.557 12 O -0.550 6.550 13 C -0.105 4.105 14 C -0.098 4.098 15 C -0.111 4.111 16 C 0.138 3.862 17 N -0.730 5.730 18 C 0.694 3.306 19 N -0.847 5.847 20 O -0.653 6.653 21 C -0.152 4.152 22 C -0.113 4.113 23 C -0.107 4.107 24 H 0.265 0.735 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.416 0.584 34 H 0.415 0.585 35 H 0.420 0.580 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 -9.668 -12.672 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.168 4.168 3 Si 0.771 3.229 4 H -0.209 1.209 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.062 0.938 9 C 0.182 3.818 10 O -0.277 6.277 11 C 0.287 3.713 12 O -0.441 6.441 13 C -0.142 4.142 14 C -0.136 4.136 15 C -0.148 4.148 16 C 0.013 3.987 17 N -0.388 5.388 18 C 0.392 3.608 19 N -0.416 5.416 20 O -0.536 6.536 21 C -0.190 4.190 22 C -0.151 4.151 23 C -0.145 4.145 24 H 0.074 0.926 25 H 0.124 0.876 26 H 0.143 0.857 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.247 0.753 35 H 0.252 0.748 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.514 -9.411 -12.531 17.380 hybrid contribution 0.178 1.145 -0.279 1.192 sum -7.336 -8.265 -12.810 16.919 Atomic orbital electron populations 1.70108 1.06608 1.27658 1.47685 1.25671 0.95707 1.01865 0.93586 0.85754 0.79186 0.79885 0.78095 1.20853 1.19687 1.19387 1.21058 0.92805 0.90764 1.52200 0.93792 1.21331 0.86369 0.92272 0.81849 1.86450 1.44237 1.79404 1.17611 1.24198 0.88548 0.72764 0.85752 1.90528 1.18938 1.48536 1.86122 1.21422 0.97800 1.05698 0.89313 1.21187 0.97767 1.02174 0.92479 1.21633 0.97788 1.04435 0.90965 1.21112 0.92953 1.00228 0.84408 1.44908 1.11530 1.76168 1.06152 1.16296 0.84920 0.77616 0.81978 1.42763 1.11142 1.77826 1.09854 1.90953 1.15898 1.61364 1.85393 1.23476 0.99646 0.98174 0.97721 1.22494 0.97215 1.00360 0.94999 1.22873 0.96771 0.99385 0.95450 0.92620 0.87645 0.85719 0.93246 0.91813 0.88415 0.89421 0.93425 0.92729 0.74706 0.75338 0.74761 0.90716 0.93677 0.90881 0.89010 0.93147 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.81 12.78 21.45 0.27 -49.53 16 2 C 0.04 1.95 5.29 84.66 0.45 2.40 16 3 Si 0.95 44.35 29.55 68.60 2.03 46.38 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.53 -30.14 7.08 25.60 0.18 -29.96 16 8 H 0.04 2.62 7.81 -2.91 -0.02 2.60 16 9 C 0.22 10.97 0.47 -11.01 -0.01 10.96 16 10 O -0.36 -18.03 9.76 -51.37 -0.50 -18.53 16 11 C 0.44 19.93 7.52 71.24 0.54 20.46 16 12 O -0.55 -28.24 14.43 21.98 0.32 -27.92 16 13 C -0.10 -3.14 5.81 29.85 0.17 -2.97 16 14 C -0.10 -2.59 4.50 30.59 0.14 -2.46 16 15 C -0.11 -1.87 5.33 30.59 0.16 -1.70 16 16 C 0.14 2.86 5.67 86.38 0.49 3.35 16 17 N -0.73 -11.71 5.56 -478.53 -2.66 -14.37 16 18 C 0.69 14.63 8.84 179.06 1.58 16.22 16 19 N -0.85 -8.78 8.88 -184.75 -1.64 -10.42 16 20 O -0.65 -21.59 17.18 -4.00 -0.07 -21.66 16 21 C -0.15 -6.71 6.56 31.18 0.20 -6.51 16 22 C -0.11 -4.41 7.81 31.18 0.24 -4.17 16 23 C -0.11 -4.83 7.28 31.12 0.23 -4.60 16 24 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 25 H 0.11 2.99 8.14 -2.38 -0.02 2.98 16 26 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 28 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.42 3.32 8.49 -92.71 -0.79 2.53 16 34 H 0.42 1.12 8.84 -92.71 -0.82 0.30 16 35 H 0.42 3.77 8.93 -92.71 -0.83 2.95 16 36 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.04 2.11 8.09 -2.39 -0.02 2.09 16 38 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.09 2.84 8.14 -2.39 -0.02 2.83 16 40 H 0.05 2.47 7.97 -2.39 -0.02 2.46 16 41 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -79.53 347.69 0.75 -78.78 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -1.38 Total: 16.26 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 4.38 Total: 1.02 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -4.03 Total: -74.32 kcal Atomic # 8 Polarization: -67.86 SS G_CDS: -0.25 Total: -68.12 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -79.53 0.75 -78.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788144345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.080 kcal (2) G-P(sol) polarization free energy of solvation -79.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds