Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.52993 * 109.47473 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47378 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99728 * 66.04954 * 5 4 3 7 7 C 1.46905 * 111.00051 * 189.99991 * 5 4 3 8 8 N 1.46500 * 109.47132 * 169.99846 * 7 5 4 9 9 N 1.40169 * 126.14189 * 90.02510 * 8 7 5 10 10 C 1.32234 * 107.75528 * 180.02562 * 9 8 7 11 11 C 1.40126 * 125.92517 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00063 * 179.97438 * 11 10 9 13 13 C 1.40036 * 119.99635 * 359.97438 * 11 10 9 14 14 N 1.30793 * 120.00324 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99663 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47038 * 60.00179 * 15 13 11 17 17 H 1.48500 * 109.46849 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47060 * 300.00016 * 15 13 11 19 19 N 1.38500 * 108.14902 * 0.02562 * 10 9 8 20 20 C 1.46503 * 125.83711 * 179.97438 * 19 10 9 21 21 C 1.34729 * 108.33076 * 359.73433 * 19 10 9 22 22 S 1.71195 * 125.97607 * 180.26291 * 21 19 10 23 23 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00483 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00254 * 1 2 3 26 26 H 1.08996 * 109.47407 * 239.99517 * 2 1 3 27 27 H 1.09000 * 109.46986 * 119.99746 * 2 1 3 28 28 H 1.09004 * 109.47108 * 59.99711 * 3 2 1 29 29 H 1.09004 * 109.47368 * 299.99812 * 3 2 1 30 30 H 1.09004 * 109.46862 * 59.99962 * 4 3 2 31 31 H 1.09000 * 109.47250 * 299.99985 * 4 3 2 32 32 H 1.08996 * 109.47030 * 59.99921 * 6 5 4 33 33 H 1.08999 * 109.46702 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.46890 * 299.99929 * 6 5 4 35 35 H 1.08997 * 109.46807 * 290.00444 * 7 5 4 36 36 H 1.09000 * 109.46636 * 50.00310 * 7 5 4 37 37 H 0.96997 * 120.00323 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.47202 * 89.99659 * 20 19 10 39 39 H 1.08998 * 109.47717 * 210.00190 * 20 19 10 40 40 H 1.09001 * 109.46747 * 330.00234 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7098 3.5101 1.2528 7 6 5.5087 2.8735 -0.2375 8 7 5.9219 4.2598 -0.4690 9 7 6.3333 5.1743 0.5105 10 6 6.6210 6.3132 -0.0967 11 6 7.0700 7.4859 0.5252 12 1 7.2776 8.3654 -0.0662 13 6 7.2496 7.5173 1.9136 14 7 6.9978 6.4524 2.6300 15 14 7.8490 9.0804 2.7426 16 1 6.8862 10.1802 2.4804 17 1 7.9564 8.8544 4.2064 18 1 9.1812 9.4489 2.2000 19 7 6.4003 6.1464 -1.4538 20 6 6.5971 7.1666 -2.4866 21 6 5.9789 4.8839 -1.6625 22 16 5.5814 4.1939 -3.1780 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8892 31 1 3.9330 0.9288 0.8909 32 1 4.1594 2.9808 2.0929 33 1 4.0837 4.5336 1.2256 34 1 2.6261 3.5226 1.3693 35 1 6.0323 2.4787 0.6331 36 1 5.7527 2.2708 -1.1124 37 1 7.1226 6.4741 3.5917 38 1 7.6185 7.1105 -2.8628 39 1 5.8984 6.9945 -3.3053 40 1 6.4208 8.1541 -2.0600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794616382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = 55.817668 kcal Electronic energy + Delta-G solvation = -20666.043280 eV Core-core repulsion = 17642.697556 eV Total energy + Delta-G solvation = -3023.345725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.63140 -39.09823 -36.35897 -35.72628 -34.90825 -32.50886 -30.28499 -29.32488 -28.26834 -27.50521 -25.48693 -23.51162 -22.65674 -22.36941 -21.70409 -19.47329 -18.41010 -17.50791 -17.42164 -16.87583 -16.49773 -16.44854 -16.15974 -15.54497 -15.17818 -14.72367 -14.34221 -13.97910 -13.76477 -13.69948 -13.46355 -13.39867 -13.05024 -12.96576 -12.81388 -12.66400 -12.43019 -12.16732 -12.04247 -11.96398 -11.83774 -11.66787 -11.39053 -11.36351 -10.91430 -10.66009 -9.47082 -8.81080 -8.64326 -8.55329 -6.97357 0.53637 0.83209 1.29491 1.44914 1.58449 1.66945 1.86193 2.13019 2.41995 2.88114 3.09522 3.56682 3.92314 4.00918 4.04641 4.09909 4.26474 4.34947 4.39152 4.46006 4.49724 4.57417 4.66937 4.70441 4.72322 4.90038 4.92638 4.98254 5.02980 5.09262 5.10368 5.26655 5.28851 5.39395 5.48582 5.70051 5.78863 5.96651 6.18719 6.48404 6.56835 7.32799 8.23988 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.004832 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.680370 B = 5793.482838 C = 7020.740539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.108 4.108 4 C 0.064 3.936 5 N -0.561 5.561 6 C 0.040 3.960 7 C 0.325 3.675 8 N -0.374 5.374 9 N -0.369 5.369 10 C 0.353 3.647 11 C -0.452 4.452 12 H 0.118 0.882 13 C 0.037 3.963 14 N -0.775 5.775 15 Si 1.006 2.994 16 H -0.254 1.254 17 H -0.273 1.273 18 H -0.254 1.254 19 N -0.518 5.518 20 C 0.095 3.905 21 C 0.467 3.533 22 S -0.739 6.739 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.292 0.708 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 -3.245 3.006 6.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.146 4.146 4 C -0.063 4.063 5 N -0.287 5.287 6 C -0.108 4.108 7 C 0.113 3.887 8 N -0.160 5.160 9 N -0.202 5.202 10 C 0.105 3.895 11 C -0.493 4.493 12 H 0.136 0.864 13 C -0.186 4.186 14 N -0.399 5.399 15 Si 0.825 3.175 16 H -0.178 1.178 17 H -0.197 1.197 18 H -0.178 1.178 19 N -0.219 5.219 20 C -0.046 4.046 21 C 0.096 3.904 22 S -0.615 6.615 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.139 -4.104 2.883 7.181 hybrid contribution 0.900 0.842 0.985 1.578 sum -4.239 -3.262 3.868 6.601 Atomic orbital electron populations 1.21749 0.95151 1.02148 1.01720 1.21452 0.96445 0.95138 1.02525 1.21549 0.93153 0.97932 1.01951 1.22141 0.96724 0.85815 1.01580 1.61796 1.12286 1.18569 1.36090 1.22240 1.01251 0.98477 0.88827 1.21820 0.88434 0.76485 1.01911 1.49446 1.50391 1.12803 1.03352 1.79266 1.36461 0.98058 1.06383 1.21684 0.94157 0.95791 0.77876 1.18894 1.41775 0.95144 0.93507 0.86392 1.26861 0.93110 1.01629 0.97033 1.69953 1.30895 1.30417 1.08672 0.84868 0.79784 0.75998 0.76879 1.17795 1.19728 1.17815 1.46255 1.55976 1.10253 1.09422 1.22029 1.03630 0.89559 0.89403 1.22835 0.89587 0.85672 0.92342 1.92608 1.78924 1.76811 1.13166 0.91603 0.92759 0.93139 0.91615 0.91247 0.92086 0.92697 0.90217 0.93343 0.95213 0.93982 0.90146 0.91374 0.87316 0.89765 0.89979 0.89387 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.82 16 2 C -0.12 -2.20 5.93 30.59 0.18 -2.02 16 3 C -0.11 -2.61 5.14 30.59 0.16 -2.45 16 4 C 0.06 1.77 4.96 86.30 0.43 2.19 16 5 N -0.56 -20.30 4.90 -934.88 -4.58 -24.88 16 6 C 0.04 1.45 9.22 127.69 1.18 2.63 16 7 C 0.32 12.95 5.92 170.80 1.01 13.96 16 8 N -0.37 -17.83 3.34 -359.72 -1.20 -19.03 16 9 N -0.37 -18.92 9.69 -55.17 -0.53 -19.45 16 10 C 0.35 17.42 7.50 133.53 1.00 18.42 16 11 C -0.45 -20.53 8.98 23.16 0.21 -20.32 16 12 H 0.12 4.66 7.11 -2.91 -0.02 4.64 16 13 C 0.04 1.60 5.50 85.28 0.47 2.07 16 14 N -0.77 -36.79 11.90 21.84 0.26 -36.53 16 15 Si 1.01 32.20 29.56 68.60 2.03 34.22 16 16 H -0.25 -7.79 7.11 99.48 0.71 -7.08 16 17 H -0.27 -8.57 7.11 99.48 0.71 -7.86 16 18 H -0.25 -7.80 7.11 99.48 0.71 -7.09 16 19 N -0.52 -23.82 3.17 -548.31 -1.74 -25.56 16 20 C 0.10 3.37 10.64 127.77 1.36 4.73 16 21 C 0.47 22.92 7.84 179.06 1.40 24.32 16 22 S -0.74 -37.48 29.50 -56.49 -1.67 -39.15 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.47 6.55 -2.38 -0.02 1.45 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.15 7.93 -2.38 -0.02 2.13 16 31 H 0.05 1.18 8.12 -2.39 -0.02 1.17 16 32 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.04 1.88 6.64 -2.39 -0.02 1.86 16 34 H 0.08 2.54 6.47 -2.39 -0.02 2.53 16 35 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 36 H 0.11 4.29 7.43 -2.39 -0.02 4.28 16 37 H 0.29 12.55 8.30 -92.71 -0.77 11.79 16 38 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 39 H 0.09 3.14 7.62 -2.39 -0.02 3.12 16 40 H 0.11 3.22 7.32 -2.39 -0.02 3.20 16 Total: -1.00 -63.51 341.65 1.69 -61.82 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 1.02 Total: 26.83 kcal Atomic # 6 Polarization: 33.61 SS G_CDS: 8.11 Total: 41.72 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -7.79 Total: -125.44 kcal Atomic # 14 Polarization: 32.20 SS G_CDS: 2.03 Total: 34.22 kcal Atomic # 16 Polarization: -37.48 SS G_CDS: -1.67 Total: -39.15 kcal Total: -63.51 1.69 -61.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794616382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.635 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds