Wall clock time and date at job start Tue Mar 31 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 N 1.46904 * 109.46823 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99799 * 293.95390 * 4 3 2 6 6 C 1.53006 * 109.46908 * 164.97257 * 5 4 3 7 7 C 1.46899 * 110.99662 * 170.00371 * 4 3 2 8 8 N 1.46505 * 109.46920 * 288.23371 * 7 4 3 9 9 N 1.40165 * 126.14604 * 92.95730 * 8 7 4 10 10 C 1.32239 * 107.76003 * 179.97438 * 9 8 7 11 11 C 1.40117 * 125.92429 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99784 * 179.97438 * 11 10 9 13 13 C 1.40035 * 120.00349 * 359.97438 * 11 10 9 14 14 N 1.30801 * 119.99895 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00198 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47089 * 89.99641 * 15 13 11 17 17 H 1.48498 * 109.47432 * 209.99789 * 15 13 11 18 18 H 1.48500 * 109.47064 * 330.00131 * 15 13 11 19 19 N 1.38501 * 108.14554 * 0.02562 * 10 9 8 20 20 C 1.46496 * 125.83234 * 179.97438 * 19 10 9 21 21 C 1.34733 * 108.32999 * 359.73645 * 19 10 9 22 22 S 1.71194 * 125.97414 * 180.26525 * 21 19 10 23 23 H 1.08998 * 109.47347 * 300.00070 * 1 2 3 24 24 H 1.09003 * 109.46938 * 60.00332 * 1 2 3 25 25 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47347 * 239.99930 * 2 1 3 27 27 H 1.09003 * 109.46938 * 119.99668 * 2 1 3 28 28 H 1.09002 * 109.46957 * 60.00275 * 3 2 1 29 29 H 1.08993 * 109.47096 * 299.99633 * 3 2 1 30 30 H 1.08999 * 109.47682 * 284.97147 * 5 4 3 31 31 H 1.08998 * 109.47457 * 44.97506 * 5 4 3 32 32 H 1.08997 * 109.47384 * 186.08152 * 6 5 4 33 33 H 1.09000 * 109.46865 * 306.08545 * 6 5 4 34 34 H 1.09005 * 109.47029 * 66.08263 * 6 5 4 35 35 H 1.08998 * 109.47432 * 48.23589 * 7 4 3 36 36 H 1.08999 * 109.46849 * 168.24012 * 7 4 3 37 37 H 0.96993 * 119.99954 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46961 * 90.00687 * 20 19 10 39 39 H 1.08999 * 109.47284 * 210.00187 * 20 19 10 40 40 H 1.08997 * 109.47663 * 330.00638 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0349 0.8859 1.2542 6 6 5.5184 0.5535 1.0819 7 6 4.0355 2.7931 -0.2374 8 7 3.8075 3.1667 -1.6356 9 7 2.7019 3.8694 -2.1339 10 6 2.8670 4.0086 -3.4385 11 6 1.9841 4.6538 -4.3147 12 1 2.2153 4.7122 -5.3681 13 6 0.8022 5.2227 -3.8246 14 7 0.5220 5.1515 -2.5490 15 14 -0.3744 6.0835 -4.9926 16 1 -1.3575 5.1019 -5.5172 17 1 -1.0913 7.1626 -4.2669 18 1 0.3904 6.6700 -6.1223 19 7 4.0633 3.4049 -3.7888 20 6 4.6236 3.3318 -5.1404 21 6 4.6261 2.9010 -2.6732 22 16 6.1182 2.0660 -2.5886 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9169 1.6169 2.0541 31 1 3.4863 -0.0213 1.5073 32 1 5.8821 0.0421 1.9731 33 1 5.6473 -0.0931 0.2139 34 1 6.0826 1.4747 0.9358 35 1 3.5264 3.5019 0.4157 36 1 5.1048 2.8085 -0.0270 37 1 -0.2965 5.5459 -2.2095 38 1 5.2564 4.2012 -5.3188 39 1 5.2181 2.4235 -5.2386 40 1 3.8134 3.3164 -5.8693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794622462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:35 Heat of formation + Delta-G solvation = 74.400823 kcal Electronic energy + Delta-G solvation = -21262.073116 eV Core-core repulsion = 18239.533217 eV Total energy + Delta-G solvation = -3022.539899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82109 -37.90296 -34.43486 -33.90074 -33.14854 -30.91548 -29.85376 -27.80545 -26.55564 -25.47387 -23.90518 -22.13930 -21.30387 -20.89064 -20.05915 -17.74984 -16.76620 -15.75728 -15.69277 -15.46912 -14.96051 -14.86396 -14.50475 -14.10445 -13.73988 -13.33869 -12.93054 -12.69685 -12.37119 -12.17970 -11.96975 -11.80624 -11.64304 -11.48084 -11.43813 -11.13933 -11.08456 -10.80546 -10.66847 -10.52236 -10.47095 -10.22192 -9.98758 -9.51738 -9.17216 -8.86818 -8.04734 -7.05734 -6.68920 -6.58404 -5.14032 2.39427 2.66748 2.76934 2.90081 2.93598 3.44573 3.53202 3.64281 4.08240 4.32917 4.84134 5.11473 5.20168 5.27719 5.38759 5.50303 5.57578 5.59145 5.65953 5.75000 5.82866 5.88440 5.97933 6.06787 6.10765 6.14137 6.26058 6.30758 6.33332 6.49980 6.56666 6.60679 6.69988 6.80440 7.03490 7.27850 7.31962 7.65210 7.82438 8.24855 8.35618 9.17424 9.91559 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.006767 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.045709 B = 4136.952398 C = 5534.207581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.053 3.947 4 N -0.545 5.545 5 C 0.058 3.942 6 C -0.146 4.146 7 C 0.326 3.674 8 N -0.376 5.376 9 N -0.345 5.345 10 C 0.376 3.624 11 C -0.437 4.437 12 H 0.097 0.903 13 C 0.077 3.923 14 N -0.739 5.739 15 Si 0.927 3.073 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.259 1.259 19 N -0.518 5.518 20 C 0.101 3.899 21 C 0.480 3.520 22 S -0.706 6.706 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.028 0.972 29 H 0.093 0.907 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.284 0.716 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 -2.940 3.230 4.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.075 4.075 4 N -0.271 5.271 5 C -0.070 4.070 6 C -0.204 4.204 7 C 0.114 3.886 8 N -0.162 5.162 9 N -0.176 5.176 10 C 0.126 3.874 11 C -0.479 4.479 12 H 0.115 0.885 13 C -0.149 4.149 14 N -0.363 5.363 15 Si 0.751 3.249 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.183 1.183 19 N -0.219 5.219 20 C -0.042 4.042 21 C 0.112 3.888 22 S -0.582 6.582 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.111 0.889 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.064 -3.480 3.992 5.684 hybrid contribution -1.198 1.220 -0.522 1.788 sum -3.263 -2.261 3.470 5.272 Atomic orbital electron populations 1.21708 0.95845 1.01098 1.01973 1.21514 0.95197 0.96719 1.02005 1.22249 0.86339 0.96815 1.02089 1.61764 1.08144 1.22024 1.35156 1.22025 0.96916 0.99056 0.88987 1.21781 0.94434 1.02465 1.01676 1.21671 1.01153 0.88566 0.77209 1.49137 1.16714 1.43693 1.06683 1.79309 1.04830 1.27040 1.06465 1.21260 0.83433 0.91720 0.90978 1.18346 1.02197 1.32734 0.94613 0.88537 1.25822 0.98049 0.95106 0.95937 1.69873 1.22485 1.30553 1.13402 0.85978 0.79630 0.79162 0.80173 1.19091 1.19839 1.18286 1.45969 1.19745 1.48318 1.07905 1.21732 0.99359 1.03671 0.79442 1.22863 0.93168 0.89557 0.83249 1.92651 1.11334 1.59835 1.94370 0.93080 0.92438 0.92991 0.91484 0.92481 0.95336 0.88860 0.95221 0.90469 0.93052 0.91008 0.92435 0.91892 0.87262 0.90447 0.91612 0.89229 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.74 5.90 -26.73 -0.16 -1.90 16 3 C 0.05 0.93 4.86 -3.82 -0.02 0.91 16 4 N -0.54 -9.74 4.59 -238.53 -1.09 -10.84 16 5 C 0.06 0.83 5.56 -3.82 -0.02 0.81 16 6 C -0.15 -2.08 9.85 37.16 0.37 -1.72 16 7 C 0.33 6.41 5.75 -63.31 -0.36 6.05 16 8 N -0.38 -8.77 3.45 -65.05 -0.22 -8.99 16 9 N -0.34 -8.68 9.86 31.21 0.31 -8.37 16 10 C 0.38 9.22 7.50 -155.27 -1.16 8.06 16 11 C -0.44 -10.13 8.98 -38.20 -0.34 -10.47 16 12 H 0.10 2.02 7.11 -52.49 -0.37 1.64 16 13 C 0.08 1.72 5.50 -17.32 -0.10 1.63 16 14 N -0.74 -17.55 11.90 55.55 0.66 -16.88 16 15 Si 0.93 16.48 29.56 -169.99 -5.02 11.46 16 16 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 17 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 18 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 19 N -0.52 -11.86 3.17 -124.66 -0.39 -12.26 16 20 C 0.10 1.83 10.64 59.84 0.64 2.47 16 21 C 0.48 11.57 7.84 -86.93 -0.68 10.89 16 22 S -0.71 -17.43 29.56 -107.50 -3.18 -20.61 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.76 6.29 -51.93 -0.33 0.43 16 28 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.09 2.02 6.83 -51.93 -0.35 1.66 16 30 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 31 H 0.08 1.01 5.96 -51.93 -0.31 0.70 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.88 6.72 -51.93 -0.35 0.53 16 35 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.11 2.13 5.93 -51.93 -0.31 1.82 16 37 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.62 7.62 -51.93 -0.40 1.22 16 40 H 0.08 1.33 7.32 -51.93 -0.38 0.94 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -28.99 339.00 -11.46 -40.45 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.15 Total: 5.85 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: -1.47 Total: 15.09 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.74 Total: -57.34 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.02 Total: 11.46 kcal Atomic # 16 Polarization: -17.43 SS G_CDS: -3.18 Total: -20.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.99 -11.46 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794622462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.850 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds