Wall clock time and date at job start Tue Mar 31 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46862 * 2 1 4 4 N 1.46904 * 109.46823 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99799 * 293.95390 * 4 3 2 6 6 C 1.53006 * 109.46908 * 164.97257 * 5 4 3 7 7 C 1.46899 * 110.99662 * 170.00371 * 4 3 2 8 8 N 1.46505 * 109.46920 * 288.23371 * 7 4 3 9 9 N 1.40165 * 126.14604 * 92.95730 * 8 7 4 10 10 C 1.32239 * 107.76003 * 179.97438 * 9 8 7 11 11 C 1.40117 * 125.92429 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99784 * 179.97438 * 11 10 9 13 13 C 1.40035 * 120.00349 * 359.97438 * 11 10 9 14 14 N 1.30801 * 119.99895 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00198 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47089 * 89.99641 * 15 13 11 17 17 H 1.48498 * 109.47432 * 209.99789 * 15 13 11 18 18 H 1.48500 * 109.47064 * 330.00131 * 15 13 11 19 19 N 1.38501 * 108.14554 * 0.02562 * 10 9 8 20 20 C 1.46496 * 125.83234 * 179.97438 * 19 10 9 21 21 C 1.34733 * 108.32999 * 359.73645 * 19 10 9 22 22 S 1.71194 * 125.97414 * 180.26525 * 21 19 10 23 23 H 1.08998 * 109.47347 * 300.00070 * 1 2 3 24 24 H 1.09003 * 109.46938 * 60.00332 * 1 2 3 25 25 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47347 * 239.99930 * 2 1 3 27 27 H 1.09003 * 109.46938 * 119.99668 * 2 1 3 28 28 H 1.09002 * 109.46957 * 60.00275 * 3 2 1 29 29 H 1.08993 * 109.47096 * 299.99633 * 3 2 1 30 30 H 1.08999 * 109.47682 * 284.97147 * 5 4 3 31 31 H 1.08998 * 109.47457 * 44.97506 * 5 4 3 32 32 H 1.08997 * 109.47384 * 186.08152 * 6 5 4 33 33 H 1.09000 * 109.46865 * 306.08545 * 6 5 4 34 34 H 1.09005 * 109.47029 * 66.08263 * 6 5 4 35 35 H 1.08998 * 109.47432 * 48.23589 * 7 4 3 36 36 H 1.08999 * 109.46849 * 168.24012 * 7 4 3 37 37 H 0.96993 * 119.99954 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46961 * 90.00687 * 20 19 10 39 39 H 1.08999 * 109.47284 * 210.00187 * 20 19 10 40 40 H 1.08997 * 109.47663 * 330.00638 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0349 0.8859 1.2542 6 6 5.5184 0.5535 1.0819 7 6 4.0355 2.7931 -0.2374 8 7 3.8075 3.1667 -1.6356 9 7 2.7019 3.8694 -2.1339 10 6 2.8670 4.0086 -3.4385 11 6 1.9841 4.6538 -4.3147 12 1 2.2153 4.7122 -5.3681 13 6 0.8022 5.2227 -3.8246 14 7 0.5220 5.1515 -2.5490 15 14 -0.3744 6.0835 -4.9926 16 1 -1.3575 5.1019 -5.5172 17 1 -1.0913 7.1626 -4.2669 18 1 0.3904 6.6700 -6.1223 19 7 4.0633 3.4049 -3.7888 20 6 4.6236 3.3318 -5.1404 21 6 4.6261 2.9010 -2.6732 22 16 6.1182 2.0660 -2.5886 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9169 1.6169 2.0541 31 1 3.4863 -0.0213 1.5073 32 1 5.8821 0.0421 1.9731 33 1 5.6473 -0.0931 0.2139 34 1 6.0826 1.4747 0.9358 35 1 3.5264 3.5019 0.4157 36 1 5.1048 2.8085 -0.0270 37 1 -0.2965 5.5459 -2.2095 38 1 5.2564 4.2012 -5.3188 39 1 5.2181 2.4235 -5.2386 40 1 3.8134 3.3164 -5.8693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794622462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:35 Heat of formation + Delta-G solvation = 59.405053 kcal Electronic energy + Delta-G solvation = -21262.723381 eV Core-core repulsion = 18239.533217 eV Total energy + Delta-G solvation = -3023.190164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.60321 -39.30648 -36.10390 -35.59102 -34.42729 -32.57850 -31.25877 -29.36943 -28.26242 -26.95203 -25.32399 -23.62060 -22.80639 -22.63055 -21.42157 -19.47534 -18.48287 -17.42745 -17.33722 -16.92975 -16.52925 -16.32658 -16.00059 -15.57079 -15.21317 -14.73273 -14.19755 -13.99807 -13.88518 -13.66893 -13.44187 -13.31560 -13.06710 -12.76910 -12.72793 -12.65623 -12.41558 -12.31274 -12.05380 -12.01237 -11.89546 -11.71774 -11.44145 -11.29057 -10.87424 -10.63994 -9.44144 -8.78476 -8.60211 -8.49935 -6.95951 0.57601 0.87367 1.28216 1.44472 1.59544 1.70813 1.86124 2.13161 2.43854 2.86487 3.10010 3.58466 3.87395 4.01638 4.05731 4.11359 4.21708 4.35261 4.38805 4.46067 4.50576 4.58251 4.64340 4.71146 4.80571 4.83913 4.94882 4.98122 5.08871 5.09979 5.13477 5.23709 5.29310 5.32166 5.46919 5.75851 5.86332 6.01175 6.23772 6.49946 6.57924 7.35057 8.24568 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.006767 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.045709 B = 4136.952398 C = 5534.207581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C 0.061 3.939 4 N -0.557 5.557 5 C 0.058 3.942 6 C -0.138 4.138 7 C 0.324 3.676 8 N -0.373 5.373 9 N -0.370 5.370 10 C 0.353 3.647 11 C -0.451 4.451 12 H 0.117 0.883 13 C 0.037 3.963 14 N -0.775 5.775 15 Si 1.005 2.995 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.247 1.247 19 N -0.519 5.519 20 C 0.096 3.904 21 C 0.466 3.534 22 S -0.733 6.733 23 H 0.061 0.939 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.291 0.709 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 -2.979 3.200 5.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.067 4.067 4 N -0.283 5.283 5 C -0.069 4.069 6 C -0.195 4.195 7 C 0.112 3.888 8 N -0.159 5.159 9 N -0.203 5.203 10 C 0.104 3.896 11 C -0.492 4.492 12 H 0.135 0.865 13 C -0.187 4.187 14 N -0.399 5.399 15 Si 0.824 3.176 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.170 1.170 19 N -0.220 5.220 20 C -0.045 4.045 21 C 0.095 3.905 22 S -0.609 6.609 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.160 -3.537 3.967 6.183 hybrid contribution -0.871 1.235 -0.468 1.582 sum -4.031 -2.301 3.499 5.813 Atomic orbital electron populations 1.21672 0.94572 1.02398 1.01446 1.21460 0.96230 0.94737 1.02162 1.22119 0.86226 0.98182 1.00189 1.61781 1.08368 1.20735 1.37458 1.22165 0.96885 1.00038 0.87768 1.21705 0.94407 1.01416 1.01992 1.21794 1.01237 0.89829 0.75899 1.49471 1.15933 1.42880 1.07624 1.79246 1.05709 1.27946 1.07374 1.21687 0.84236 0.92349 0.91323 1.18891 1.02418 1.32439 0.95496 0.86506 1.26855 0.99243 0.95144 0.97416 1.69967 1.23329 1.31167 1.15466 0.84834 0.77065 0.77794 0.77939 1.18673 1.19653 1.17048 1.46249 1.19278 1.47557 1.08961 1.22006 1.00352 1.04274 0.77914 1.22880 0.93262 0.90314 0.84042 1.92562 1.12419 1.61259 1.94689 0.91949 0.94605 0.90753 0.93485 0.89971 0.94532 0.93374 0.93419 0.88520 0.89843 0.93634 0.93964 0.91719 0.87313 0.89841 0.90071 0.89396 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.11 -3.13 5.90 30.60 0.18 -2.95 16 3 C 0.06 2.14 4.86 86.30 0.42 2.56 16 4 N -0.56 -19.95 4.59 -908.57 -4.17 -24.12 16 5 C 0.06 1.57 5.56 86.31 0.48 2.05 16 6 C -0.14 -3.79 9.85 71.98 0.71 -3.08 16 7 C 0.32 13.00 5.75 170.81 0.98 13.98 16 8 N -0.37 -17.86 3.45 -359.72 -1.24 -19.10 16 9 N -0.37 -19.13 9.86 -55.17 -0.54 -19.67 16 10 C 0.35 17.53 7.50 133.52 1.00 18.53 16 11 C -0.45 -20.65 8.98 23.16 0.21 -20.44 16 12 H 0.12 4.69 7.11 -2.91 -0.02 4.66 16 13 C 0.04 1.60 5.50 85.28 0.47 2.07 16 14 N -0.77 -37.04 11.90 21.84 0.26 -36.78 16 15 Si 1.00 32.53 29.56 68.60 2.03 34.56 16 16 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 17 H -0.27 -8.66 7.11 99.48 0.71 -7.95 16 18 H -0.25 -7.50 7.11 99.48 0.71 -6.79 16 19 N -0.52 -24.00 3.17 -548.32 -1.74 -25.73 16 20 C 0.10 3.42 10.64 127.77 1.36 4.78 16 21 C 0.47 22.88 7.84 179.06 1.40 24.28 16 22 S -0.73 -36.76 29.56 -56.49 -1.67 -38.43 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.97 6.29 -2.39 -0.02 1.95 16 28 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 29 H 0.05 2.15 6.83 -2.39 -0.02 2.14 16 30 H 0.05 1.15 8.06 -2.39 -0.02 1.13 16 31 H 0.10 2.25 5.96 -2.39 -0.01 2.24 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.28 6.72 -2.38 -0.02 1.26 16 35 H 0.07 2.53 8.06 -2.39 -0.02 2.51 16 36 H 0.11 4.34 5.93 -2.39 -0.01 4.32 16 37 H 0.29 12.59 8.29 -92.71 -0.77 11.82 16 38 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.09 3.16 7.62 -2.39 -0.02 3.14 16 40 H 0.11 3.23 7.32 -2.39 -0.02 3.21 16 Total: -1.00 -63.76 339.00 1.88 -61.88 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 1.03 Total: 28.58 kcal Atomic # 6 Polarization: 30.90 SS G_CDS: 7.92 Total: 38.82 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -7.43 Total: -125.41 kcal Atomic # 14 Polarization: 32.53 SS G_CDS: 2.03 Total: 34.56 kcal Atomic # 16 Polarization: -36.76 SS G_CDS: -1.67 Total: -38.43 kcal Total: -63.76 1.88 -61.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794622462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.283 kcal (2) G-P(sol) polarization free energy of solvation -63.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds