Wall clock time and date at job start Tue Mar 31 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99771 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04511 * 3 2 1 5 5 O 1.21282 * 120.00041 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00037 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00169 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.46944 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00202 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99573 * 0.27650 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46758 * 89.99934 * 12 10 8 14 14 H 1.48499 * 109.47026 * 209.99782 * 12 10 8 15 15 H 1.48496 * 109.47474 * 329.99818 * 12 10 8 16 16 C 1.46898 * 111.00161 * 236.04801 * 2 1 3 17 17 H 1.09008 * 110.32869 * 176.71201 * 16 2 1 18 18 C 1.54495 * 110.36603 * 298.94936 * 16 2 1 19 19 C 1.54568 * 102.14348 * 134.18305 * 18 16 2 20 20 C 1.53007 * 110.43952 * 91.89183 * 19 18 16 21 21 C 1.52998 * 110.44015 * 214.28550 * 19 18 16 22 22 O 1.45835 * 104.44647 * 333.15158 * 19 18 16 23 23 C 1.34060 * 109.90591 * 30.60576 * 22 19 18 24 24 O 1.20823 * 125.09526 * 159.19185 * 23 22 19 25 25 H 1.08993 * 109.47420 * 60.00547 * 1 2 3 26 26 H 1.09000 * 109.46769 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47293 * 299.99779 * 1 2 3 28 28 H 1.09004 * 109.47040 * 306.04573 * 3 2 1 29 29 H 1.09000 * 109.47033 * 186.04621 * 3 2 1 30 30 H 0.97004 * 119.99467 * 359.97438 * 6 4 3 31 31 H 1.09000 * 109.46609 * 59.99870 * 7 6 4 32 32 H 1.08999 * 109.46486 * 299.99949 * 7 6 4 33 33 H 0.97001 * 120.00651 * 359.71956 * 11 10 8 34 34 H 1.08999 * 110.86653 * 252.34572 * 18 16 2 35 35 H 1.08999 * 110.86686 * 15.81061 * 18 16 2 36 36 H 1.08999 * 109.47141 * 60.00150 * 20 19 18 37 37 H 1.09001 * 109.46765 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47072 * 299.99761 * 20 19 18 39 39 H 1.08998 * 109.47043 * 59.99970 * 21 19 18 40 40 H 1.09001 * 109.47567 * 180.02562 * 21 19 18 41 41 H 1.09007 * 109.47261 * 299.99890 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0046 1.4457 2.1407 6 7 2.0178 3.3203 1.5233 7 6 1.6698 3.9770 2.7857 8 6 2.2097 5.3839 2.7856 9 1 2.7577 5.7520 1.9308 10 6 2.0050 6.2010 3.8773 11 7 1.3432 5.7506 4.9207 12 14 2.6748 7.9447 3.8774 13 1 1.6576 8.8657 3.3098 14 1 2.9908 8.3535 5.2696 15 1 3.9086 8.0012 3.0529 16 6 1.9954 -0.7659 -1.1376 17 1 3.0839 -0.7105 -1.1602 18 6 1.5336 -2.2379 -1.0545 19 6 1.0707 -2.5156 -2.5029 20 6 2.2220 -3.0901 -3.3309 21 6 -0.1206 -3.4756 -2.5082 22 8 0.6770 -1.2085 -3.0160 23 6 1.4124 -0.2498 -2.4352 24 8 1.5836 0.8601 -2.8807 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.5610 1.9274 -0.8310 29 1 3.0797 1.3445 -0.1082 30 1 2.5232 3.8015 0.8494 31 1 2.1049 3.4212 3.6163 32 1 0.5855 4.0034 2.8945 33 1 0.9956 4.8450 4.9208 34 1 2.3628 -2.8900 -0.7801 35 1 0.7075 -2.3466 -0.3518 36 1 2.5619 -4.0234 -2.8822 37 1 1.8785 -3.2802 -4.3478 38 1 3.0454 -2.3763 -3.3526 39 1 -0.9462 -3.0332 -1.9507 40 1 -0.4336 -3.6607 -3.5358 41 1 0.1694 -4.4173 -2.0419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795682558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:45 Heat of formation + Delta-G solvation = -114.646988 kcal Electronic energy + Delta-G solvation = -22989.403709 eV Core-core repulsion = 19483.620460 eV Total energy + Delta-G solvation = -3505.783249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80770 -39.14221 -38.07060 -36.64030 -34.39425 -33.97735 -32.44405 -30.75456 -28.58258 -27.92304 -26.64961 -25.31849 -23.75675 -22.48760 -21.66522 -20.22562 -19.68525 -17.55300 -17.28473 -17.07832 -16.57287 -15.87933 -15.81169 -15.33089 -14.72055 -14.45971 -14.30404 -14.09513 -13.85261 -13.61825 -13.44475 -12.91692 -12.81815 -12.56032 -12.46210 -12.39800 -12.24612 -12.15225 -11.93578 -11.64363 -11.32866 -11.20633 -11.01142 -10.86682 -10.80242 -10.75353 -10.17045 -9.22923 -8.79066 -8.68083 -8.43851 -7.99217 -6.51440 -4.24856 1.74056 2.79820 3.25484 3.28914 3.38507 3.41815 3.57429 3.66496 3.85362 4.17213 4.22479 4.27072 4.46616 4.48981 4.75309 5.01221 5.10819 5.13542 5.17078 5.24991 5.26886 5.28236 5.35312 5.39692 5.49125 5.51503 5.56757 5.58748 5.67211 6.11453 6.46553 6.63879 6.69920 7.00072 7.19223 7.21956 7.31693 7.66126 8.27464 8.46201 8.71710 8.97222 9.48771 10.88856 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042539 B = 0.003079 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.063695 B = 9091.464425 C = 9421.898284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.486 5.486 3 C 0.025 3.975 4 C 0.503 3.497 5 O -0.542 6.542 6 N -0.708 5.708 7 C 0.242 3.758 8 C -0.623 4.623 9 H 0.058 0.942 10 C 0.022 3.978 11 N -0.903 5.903 12 Si 1.079 2.921 13 H -0.286 1.286 14 H -0.282 1.282 15 H -0.287 1.287 16 C 0.023 3.977 17 H 0.125 0.875 18 C -0.141 4.141 19 C 0.102 3.898 20 C -0.164 4.164 21 C -0.143 4.143 22 O -0.341 6.341 23 C 0.452 3.548 24 O -0.452 6.452 25 H 0.022 0.978 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.393 0.607 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.273 0.727 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -20.031 -16.330 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.211 5.211 3 C -0.105 4.105 4 C 0.287 3.713 5 O -0.421 6.421 6 N -0.356 5.356 7 C 0.120 3.880 8 C -0.661 4.661 9 H 0.076 0.924 10 C -0.183 4.183 11 N -0.537 5.537 12 Si 0.906 3.094 13 H -0.213 1.213 14 H -0.208 1.208 15 H -0.213 1.213 16 C -0.088 4.088 17 H 0.143 0.857 18 C -0.178 4.178 19 C 0.065 3.935 20 C -0.222 4.222 21 C -0.200 4.200 22 O -0.258 6.258 23 C 0.289 3.711 24 O -0.334 6.334 25 H 0.041 0.959 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.226 0.774 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.209 -18.739 -14.727 23.864 hybrid contribution -0.017 -0.734 -2.017 2.146 sum 1.192 -19.473 -16.744 25.710 Atomic orbital electron populations 1.22796 0.85992 1.02639 1.02809 1.62044 1.09423 1.13345 1.36281 1.22193 1.02106 0.89007 0.97239 1.20212 0.80546 0.82435 0.88141 1.90613 1.40415 1.64421 1.46602 1.46260 1.55641 1.12299 1.21450 1.19160 0.95696 0.92430 0.80685 1.22101 1.40403 0.97691 1.05954 0.92410 1.25886 0.95148 1.05395 0.91912 1.70729 1.33182 1.19638 1.30196 0.83409 0.75923 0.73922 0.76155 1.21272 1.20774 1.21339 1.23323 1.02617 0.95187 0.87670 0.85720 1.23228 1.04223 0.94474 0.95912 1.23140 0.96400 0.81053 0.92950 1.22259 0.96937 1.01953 1.01006 1.21875 0.96408 0.97988 1.03727 1.87060 1.56816 1.17741 1.64183 1.24348 0.75999 0.84831 0.85884 1.90715 1.55364 1.18810 1.68492 0.95914 0.90897 0.87795 0.90702 0.87892 0.77381 0.96463 0.96597 0.91677 0.87788 0.87711 0.89815 0.90950 0.91806 0.91083 0.91128 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.07 8.53 60.06 0.51 0.58 16 2 N -0.49 -6.80 4.51 -236.40 -1.07 -7.87 16 3 C 0.03 0.39 4.99 -4.97 -0.02 0.37 16 4 C 0.50 10.17 7.56 -10.99 -0.08 10.09 16 5 O -0.54 -12.72 14.31 5.56 0.08 -12.64 16 6 N -0.71 -15.33 5.55 -61.47 -0.34 -15.67 16 7 C 0.24 6.45 4.74 -5.20 -0.02 6.43 16 8 C -0.62 -17.37 9.28 -34.44 -0.32 -17.69 16 9 H 0.06 1.53 7.60 -52.49 -0.40 1.14 16 10 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 11 N -0.90 -27.55 13.65 55.43 0.76 -26.79 16 12 Si 1.08 24.75 29.90 -169.99 -5.08 19.67 16 13 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.02 0.25 3.07 -67.77 -0.21 0.04 16 17 H 0.13 1.12 8.02 -51.92 -0.42 0.71 16 18 C -0.14 -1.04 5.62 -25.12 -0.14 -1.19 16 19 C 0.10 0.73 1.24 -89.79 -0.11 0.62 16 20 C -0.16 -0.88 8.79 37.16 0.33 -0.55 16 21 C -0.14 -0.76 8.91 37.16 0.33 -0.43 16 22 O -0.34 -3.94 10.48 -38.47 -0.40 -4.35 16 23 C 0.45 5.86 6.09 36.31 0.22 6.08 16 24 O -0.45 -7.37 16.35 -18.41 -0.30 -7.67 16 25 H 0.02 0.33 7.15 -51.93 -0.37 -0.04 16 26 H 0.07 0.83 6.02 -51.93 -0.31 0.52 16 27 H 0.10 1.78 5.88 -51.93 -0.31 1.47 16 28 H 0.08 1.19 6.66 -51.93 -0.35 0.84 16 29 H 0.10 1.36 7.99 -51.93 -0.42 0.95 16 30 H 0.39 7.51 8.32 -40.82 -0.34 7.17 16 31 H 0.02 0.50 8.00 -51.93 -0.42 0.09 16 32 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 33 H 0.27 8.41 7.22 -40.82 -0.29 8.12 16 34 H 0.10 0.54 7.92 -51.93 -0.41 0.12 16 35 H 0.10 0.82 5.78 -51.93 -0.30 0.52 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.38 8.03 -51.93 -0.42 -0.04 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -35.00 333.65 -7.02 -42.02 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.07 Total: 3.40 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 0.38 Total: 4.88 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.65 Total: -50.33 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.62 Total: -24.66 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.00 -7.02 -42.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795682558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.629 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds