Wall clock time and date at job start Tue Mar 31 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99771 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04511 * 3 2 1 5 5 O 1.21282 * 120.00041 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00037 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00169 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.46944 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00202 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99573 * 0.27650 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46758 * 89.99934 * 12 10 8 14 14 H 1.48499 * 109.47026 * 209.99782 * 12 10 8 15 15 H 1.48496 * 109.47474 * 329.99818 * 12 10 8 16 16 C 1.46898 * 111.00161 * 236.04801 * 2 1 3 17 17 H 1.09008 * 110.32869 * 176.71201 * 16 2 1 18 18 C 1.54495 * 110.36603 * 298.94936 * 16 2 1 19 19 C 1.54568 * 102.14348 * 134.18305 * 18 16 2 20 20 C 1.53007 * 110.43952 * 91.89183 * 19 18 16 21 21 C 1.52998 * 110.44015 * 214.28550 * 19 18 16 22 22 O 1.45835 * 104.44647 * 333.15158 * 19 18 16 23 23 C 1.34060 * 109.90591 * 30.60576 * 22 19 18 24 24 O 1.20823 * 125.09526 * 159.19185 * 23 22 19 25 25 H 1.08993 * 109.47420 * 60.00547 * 1 2 3 26 26 H 1.09000 * 109.46769 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47293 * 299.99779 * 1 2 3 28 28 H 1.09004 * 109.47040 * 306.04573 * 3 2 1 29 29 H 1.09000 * 109.47033 * 186.04621 * 3 2 1 30 30 H 0.97004 * 119.99467 * 359.97438 * 6 4 3 31 31 H 1.09000 * 109.46609 * 59.99870 * 7 6 4 32 32 H 1.08999 * 109.46486 * 299.99949 * 7 6 4 33 33 H 0.97001 * 120.00651 * 359.71956 * 11 10 8 34 34 H 1.08999 * 110.86653 * 252.34572 * 18 16 2 35 35 H 1.08999 * 110.86686 * 15.81061 * 18 16 2 36 36 H 1.08999 * 109.47141 * 60.00150 * 20 19 18 37 37 H 1.09001 * 109.46765 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47072 * 299.99761 * 20 19 18 39 39 H 1.08998 * 109.47043 * 59.99970 * 21 19 18 40 40 H 1.09001 * 109.47567 * 180.02562 * 21 19 18 41 41 H 1.09007 * 109.47261 * 299.99890 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0046 1.4457 2.1407 6 7 2.0178 3.3203 1.5233 7 6 1.6698 3.9770 2.7857 8 6 2.2097 5.3839 2.7856 9 1 2.7577 5.7520 1.9308 10 6 2.0050 6.2010 3.8773 11 7 1.3432 5.7506 4.9207 12 14 2.6748 7.9447 3.8774 13 1 1.6576 8.8657 3.3098 14 1 2.9908 8.3535 5.2696 15 1 3.9086 8.0012 3.0529 16 6 1.9954 -0.7659 -1.1376 17 1 3.0839 -0.7105 -1.1602 18 6 1.5336 -2.2379 -1.0545 19 6 1.0707 -2.5156 -2.5029 20 6 2.2220 -3.0901 -3.3309 21 6 -0.1206 -3.4756 -2.5082 22 8 0.6770 -1.2085 -3.0160 23 6 1.4124 -0.2498 -2.4352 24 8 1.5836 0.8601 -2.8807 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.5610 1.9274 -0.8310 29 1 3.0797 1.3445 -0.1082 30 1 2.5232 3.8015 0.8494 31 1 2.1049 3.4212 3.6163 32 1 0.5855 4.0034 2.8945 33 1 0.9956 4.8450 4.9208 34 1 2.3628 -2.8900 -0.7801 35 1 0.7075 -2.3466 -0.3518 36 1 2.5619 -4.0234 -2.8822 37 1 1.8785 -3.2802 -4.3478 38 1 3.0454 -2.3763 -3.3526 39 1 -0.9462 -3.0332 -1.9507 40 1 -0.4336 -3.6607 -3.5358 41 1 0.1694 -4.4173 -2.0419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795682558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:44 Heat of formation + Delta-G solvation = -141.254771 kcal Electronic energy + Delta-G solvation = -22990.557509 eV Core-core repulsion = 19483.620460 eV Total energy + Delta-G solvation = -3506.937049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.67400 -40.74215 -39.04715 -37.85321 -36.36927 -34.66557 -34.48646 -31.68645 -29.96983 -28.49462 -28.21782 -26.44258 -25.01286 -24.31796 -22.43282 -21.57482 -20.91166 -19.42820 -18.40981 -18.05602 -17.73143 -17.19212 -17.02084 -16.64527 -16.15511 -15.65924 -15.62718 -15.21789 -15.09195 -14.70509 -14.51626 -14.39703 -14.16912 -14.07027 -13.40016 -13.31508 -13.12574 -13.04862 -12.92921 -12.85407 -12.71647 -12.55224 -12.39744 -11.90292 -11.88017 -11.78179 -11.49743 -11.02304 -10.80492 -10.77541 -9.99691 -9.59128 -8.81509 -6.56855 0.78327 1.54586 1.59813 1.64306 1.81432 1.97059 2.15282 2.51933 2.62211 2.97730 3.06441 3.21338 3.58642 3.70154 3.75610 3.96022 4.00111 4.11268 4.17963 4.29278 4.35849 4.61324 4.72164 4.74764 4.75830 4.79056 4.82348 4.90135 4.94118 5.03785 5.19190 5.27726 5.41302 5.44914 5.54322 5.65098 5.74630 6.06348 6.23340 6.30111 6.74870 7.20251 7.36475 8.58102 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042539 B = 0.003079 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.063695 B = 9091.464425 C = 9421.898284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.494 5.494 3 C 0.040 3.960 4 C 0.500 3.500 5 O -0.576 6.576 6 N -0.706 5.706 7 C 0.256 3.744 8 C -0.631 4.631 9 H 0.074 0.926 10 C -0.032 4.032 11 N -0.929 5.929 12 Si 1.132 2.868 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.261 1.261 16 C 0.025 3.975 17 H 0.148 0.852 18 C -0.133 4.133 19 C 0.096 3.904 20 C -0.163 4.163 21 C -0.143 4.143 22 O -0.360 6.360 23 C 0.452 3.548 24 O -0.496 6.496 25 H 0.013 0.987 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.408 0.592 31 H -0.013 1.013 32 H -0.017 1.017 33 H 0.255 0.745 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.109 -21.332 -17.841 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.218 5.218 3 C -0.091 4.091 4 C 0.287 3.713 5 O -0.457 6.457 6 N -0.357 5.357 7 C 0.133 3.867 8 C -0.669 4.669 9 H 0.092 0.908 10 C -0.230 4.230 11 N -0.565 5.565 12 Si 0.951 3.049 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.185 1.185 16 C -0.086 4.086 17 H 0.165 0.835 18 C -0.170 4.170 19 C 0.060 3.940 20 C -0.220 4.220 21 C -0.200 4.200 22 O -0.276 6.276 23 C 0.291 3.709 24 O -0.382 6.382 25 H 0.031 0.969 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.151 0.849 30 H 0.243 0.757 31 H 0.005 0.995 32 H 0.001 0.999 33 H 0.064 0.936 34 H 0.155 0.845 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.827 -20.104 -16.289 26.028 hybrid contribution -0.580 -0.488 -1.592 1.763 sum 2.248 -20.591 -17.880 27.363 Atomic orbital electron populations 1.22676 0.86513 1.03866 1.00560 1.62029 1.09093 1.12445 1.38274 1.22071 1.03881 0.89653 0.93468 1.21083 0.79136 0.81631 0.89444 1.90600 1.41635 1.65080 1.48353 1.46057 1.56308 1.13118 1.20187 1.18664 0.93363 0.92554 0.82167 1.22462 1.39996 0.97950 1.06471 0.90789 1.27639 0.94423 1.09669 0.91311 1.70874 1.35135 1.18841 1.31656 0.82767 0.76614 0.68891 0.76638 1.19719 1.20852 1.18531 1.23532 1.03694 0.96290 0.85038 0.83458 1.23329 1.05288 0.92447 0.95930 1.23560 0.97945 0.79510 0.92991 1.22308 0.95810 1.02964 1.00927 1.21950 0.95427 0.98560 1.04040 1.87051 1.56616 1.19267 1.64701 1.24695 0.75394 0.84380 0.86387 1.90681 1.57131 1.20632 1.69714 0.96855 0.88040 0.91217 0.90791 0.84872 0.75669 0.99494 0.99912 0.93596 0.84494 0.87967 0.86847 0.91075 0.92389 0.91991 0.91032 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 8.53 127.69 1.09 1.41 16 2 N -0.49 -13.18 4.51 -901.83 -4.07 -17.25 16 3 C 0.04 1.20 4.99 85.56 0.43 1.63 16 4 C 0.50 20.54 7.56 87.66 0.66 21.20 16 5 O -0.58 -27.98 14.31 -3.04 -0.04 -28.02 16 6 N -0.71 -31.06 5.55 -466.79 -2.59 -33.65 16 7 C 0.26 14.18 4.74 85.63 0.41 14.59 16 8 C -0.63 -35.40 9.28 25.60 0.24 -35.17 16 9 H 0.07 3.84 7.60 -2.91 -0.02 3.82 16 10 C -0.03 -1.82 5.46 84.66 0.46 -1.36 16 11 N -0.93 -58.18 13.65 21.45 0.29 -57.89 16 12 Si 1.13 48.86 29.90 68.60 2.05 50.91 16 13 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 16 C 0.02 0.47 3.07 44.88 0.14 0.61 16 17 H 0.15 2.14 8.02 -2.38 -0.02 2.12 16 18 C -0.13 -1.52 5.62 31.64 0.18 -1.34 16 19 C 0.10 1.12 1.24 -10.26 -0.01 1.10 16 20 C -0.16 -1.20 8.79 71.98 0.63 -0.57 16 21 C -0.14 -1.12 8.91 71.98 0.64 -0.48 16 22 O -0.36 -7.86 10.48 -50.12 -0.53 -8.39 16 23 C 0.45 11.23 6.09 71.44 0.43 11.66 16 24 O -0.50 -16.11 16.35 21.65 0.35 -15.76 16 25 H 0.01 0.39 7.15 -2.39 -0.02 0.37 16 26 H 0.10 2.20 6.02 -2.39 -0.01 2.19 16 27 H 0.07 2.47 5.88 -2.39 -0.01 2.46 16 28 H 0.07 2.31 6.66 -2.38 -0.02 2.30 16 29 H 0.13 3.21 7.99 -2.39 -0.02 3.19 16 30 H 0.41 15.38 8.32 -92.71 -0.77 14.61 16 31 H -0.01 -0.78 8.00 -2.39 -0.02 -0.80 16 32 H -0.02 -1.04 8.01 -2.39 -0.02 -1.06 16 33 H 0.25 16.51 7.22 -92.71 -0.67 15.84 16 34 H 0.14 0.72 7.92 -2.39 -0.02 0.70 16 35 H 0.10 1.27 5.78 -2.39 -0.01 1.25 16 36 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.52 8.03 -2.39 -0.02 0.50 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 Total: -1.00 -79.57 333.65 1.14 -78.43 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.37 Total: 18.34 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 5.29 Total: 13.28 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -6.36 Total: -108.79 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -0.22 Total: -52.17 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.05 Total: 50.91 kcal Total: -79.57 1.14 -78.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795682558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.820 kcal (2) G-P(sol) polarization free energy of solvation -79.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds