Wall clock time and date at job start Tue Mar 31 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47209 * 300.00284 * 3 2 1 6 6 H 1.48498 * 109.47061 * 59.99820 * 3 2 1 7 7 C 1.37880 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00111 * 172.92324 * 7 2 1 9 9 C 1.50701 * 119.99952 * 352.91489 * 7 2 1 10 10 C 1.52995 * 115.54932 * 84.53683 * 9 7 2 11 11 N 1.46505 * 109.47192 * 39.68212 * 10 9 7 12 12 C 1.34778 * 120.00001 * 181.05009 * 11 10 9 13 13 O 1.21586 * 119.99865 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99653 * 180.02562 * 12 11 10 15 15 O 1.41599 * 119.99435 * 179.72150 * 14 12 11 16 16 C 1.42902 * 113.99638 * 180.27290 * 15 14 12 17 17 H 1.09002 * 109.48446 * 30.02492 * 16 15 14 18 18 C 1.53096 * 109.48163 * 150.05989 * 16 15 14 19 19 C 1.53178 * 109.16591 * 177.59279 * 18 16 15 20 20 C 1.53180 * 109.03153 * 303.01809 * 19 18 16 21 21 C 1.53094 * 109.16566 * 56.98436 * 20 19 18 22 22 O 1.42901 * 109.48048 * 270.00057 * 16 15 14 23 23 C 1.53007 * 117.51543 * 230.23951 * 9 7 2 24 24 C 1.53000 * 59.99888 * 107.48219 * 23 9 7 25 25 H 0.96993 * 120.00068 * 5.03387 * 1 2 3 26 26 H 1.08997 * 109.47246 * 279.67669 * 10 9 7 27 27 H 1.09004 * 109.47184 * 159.67546 * 10 9 7 28 28 H 0.97001 * 119.99514 * 1.04743 * 11 10 9 29 29 H 0.97003 * 120.00434 * 359.97438 * 14 12 11 30 30 H 1.09003 * 109.52153 * 297.49986 * 18 16 15 31 31 H 1.09000 * 109.52310 * 57.68426 * 18 16 15 32 32 H 1.09001 * 109.54320 * 183.15136 * 19 18 16 33 33 H 1.09002 * 109.61635 * 62.92799 * 19 18 16 34 34 H 1.09002 * 109.52520 * 297.07262 * 20 19 18 35 35 H 1.09004 * 109.57025 * 176.91621 * 20 19 18 36 36 H 1.08998 * 109.47976 * 182.40952 * 21 20 19 37 37 H 1.08991 * 109.49072 * 62.37522 * 21 20 19 38 38 H 1.09003 * 117.49381 * 214.96974 * 23 9 7 39 39 H 1.08994 * 117.50281 * 359.97438 * 23 9 7 40 40 H 1.09004 * 117.49753 * 252.50804 * 24 23 9 41 41 H 1.09000 * 117.52024 * 107.48342 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0783 -1.1976 -0.1158 9 6 1.2596 -2.4943 0.1599 10 6 0.6733 -3.0817 -1.1254 11 7 1.6222 -2.8936 -2.2256 12 6 1.3081 -3.3165 -3.4662 13 8 0.2374 -3.8545 -3.6721 14 7 2.1814 -3.1439 -4.4781 15 8 1.8538 -3.5935 -5.7803 16 6 2.8729 -3.3512 -6.7523 17 1 3.8492 -3.3709 -6.2681 18 6 2.8164 -4.4349 -7.8322 19 6 3.8715 -4.1349 -8.9014 20 6 3.6226 -2.7344 -9.4697 21 6 3.6480 -1.7163 -8.3266 22 8 2.6644 -2.0713 -7.3525 23 6 1.7704 -3.4759 1.2166 24 6 0.4721 -2.7022 1.4551 25 1 -0.4850 0.8367 -0.0737 26 1 -0.2626 -2.5758 -1.3622 27 1 0.4855 -4.1463 -0.9857 28 1 2.4766 -2.4647 -2.0611 29 1 3.0358 -2.7150 -4.3138 30 1 3.0190 -5.4074 -7.3834 31 1 1.8268 -4.4427 -8.2891 32 1 3.7993 -4.8714 -9.7017 33 1 4.8657 -4.1764 -8.4563 34 1 2.6493 -2.7077 -9.9597 35 1 4.4011 -2.4899 -10.1924 36 1 3.4290 -0.7234 -8.7192 37 1 4.6345 -1.7145 -7.8631 38 1 1.6887 -4.5402 0.9961 39 1 2.6456 -3.1816 1.7957 40 1 0.4931 -1.8987 2.1914 41 1 -0.4638 -3.2572 1.3915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797517830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:38 Heat of formation + Delta-G solvation = -51.125000 kcal Electronic energy + Delta-G solvation = -22639.365168 eV Core-core repulsion = 19136.336439 eV Total energy + Delta-G solvation = -3503.028729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.85004 -39.02001 -36.96077 -36.26244 -34.01777 -33.24649 -32.02539 -31.83639 -29.93811 -26.04324 -25.21790 -24.84297 -23.58801 -21.20050 -20.98812 -20.21390 -19.42447 -18.51120 -17.50739 -16.84153 -16.31306 -16.02429 -15.10277 -14.90120 -14.81598 -14.62840 -14.39511 -14.00678 -13.46965 -13.33640 -13.15218 -13.01950 -12.65976 -12.58440 -11.89136 -11.66849 -11.59702 -11.42300 -11.36707 -11.04482 -10.91709 -10.64332 -10.53025 -10.22548 -9.87836 -9.69175 -9.46536 -8.94268 -8.72778 -8.51913 -8.30246 -7.85886 -6.09748 -4.19429 1.86836 3.23390 3.32903 3.33753 3.39538 3.87274 4.24767 4.32990 4.38069 4.41783 4.55274 4.59399 4.76081 4.90771 5.06426 5.19573 5.21888 5.33013 5.34513 5.41415 5.52488 5.65064 5.71182 5.89185 6.05600 6.33194 6.50068 6.58085 6.72782 6.78168 6.87362 7.08966 7.17004 7.30645 7.35442 7.42553 7.61375 7.78801 8.32974 8.69690 8.82594 9.27891 9.48123 10.97963 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.003871 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.086179 B = 7231.592672 C = 8200.732337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.028 3.972 10 C 0.186 3.814 11 N -0.702 5.702 12 C 0.715 3.285 13 O -0.588 6.588 14 N -0.618 5.618 15 O -0.106 6.106 16 C 0.229 3.771 17 H 0.069 0.931 18 C -0.139 4.139 19 C -0.118 4.118 20 C -0.161 4.161 21 C 0.069 3.931 22 O -0.396 6.396 23 C -0.211 4.211 24 C -0.151 4.151 25 H 0.262 0.738 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.401 0.599 29 H 0.402 0.598 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.656 -5.530 -14.929 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.027 3.973 10 C 0.063 3.937 11 N -0.360 5.360 12 C 0.415 3.585 13 O -0.465 6.465 14 N -0.325 5.325 15 O -0.108 6.108 16 C 0.132 3.868 17 H 0.086 0.914 18 C -0.178 4.178 19 C -0.156 4.156 20 C -0.199 4.199 21 C -0.007 4.007 22 O -0.317 6.317 23 C -0.248 4.248 24 C -0.189 4.189 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.237 0.763 29 H 0.242 0.758 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.124 -5.890 -15.034 18.546 hybrid contribution 1.558 1.405 -0.132 2.102 sum 10.681 -4.485 -15.166 19.084 Atomic orbital electron populations 1.69979 1.05937 1.26899 1.47442 1.24987 0.94748 0.98904 0.94116 0.86611 0.80138 0.83963 0.77715 1.19704 1.21022 1.20918 1.20313 0.92912 0.88581 1.52558 0.92077 1.19035 0.98385 0.93997 0.85886 1.20784 0.91339 0.96875 0.84727 1.44961 1.22797 1.63079 1.05148 1.15544 0.83029 0.80153 0.79763 1.90883 1.23194 1.49615 1.82805 1.46386 1.20940 1.67889 0.97317 1.90632 1.38609 1.75942 1.05624 1.23334 0.91104 0.84776 0.87586 0.91389 1.22054 1.01728 0.98252 0.95753 1.21594 0.98478 0.97327 0.98179 1.22270 1.03373 0.95470 0.98791 1.22555 0.91414 0.98603 0.88152 1.87944 1.51729 1.35756 1.56280 1.23093 0.98358 0.95705 1.07620 1.22504 0.92628 1.01184 1.02583 0.92809 0.91417 0.94494 0.76280 0.75814 0.89564 0.89590 0.90452 0.91432 0.90582 0.90427 0.88331 0.92990 0.91513 0.90411 0.89894 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.90 12.97 55.43 0.72 -23.18 16 2 C 0.08 2.02 5.39 -17.82 -0.10 1.92 16 3 Si 0.89 20.14 29.55 -169.99 -5.02 15.12 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.51 -12.63 7.43 -34.44 -0.26 -12.89 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.03 0.65 1.71 -155.66 -0.27 0.38 16 10 C 0.19 4.29 5.75 -4.04 -0.02 4.27 16 11 N -0.70 -14.64 5.34 -65.22 -0.35 -14.98 16 12 C 0.71 15.37 8.71 -86.92 -0.76 14.61 16 13 O -0.59 -15.13 16.75 -12.86 -0.22 -15.35 16 14 N -0.62 -10.76 6.38 27.63 0.18 -10.58 16 15 O -0.11 -1.84 11.00 -42.00 -0.46 -2.31 16 16 C 0.23 2.86 3.44 37.21 0.13 2.99 16 17 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 18 C -0.14 -1.34 5.79 -26.59 -0.15 -1.50 16 19 C -0.12 -0.81 6.03 -26.55 -0.16 -0.97 16 20 C -0.16 -1.13 6.14 -26.59 -0.16 -1.29 16 21 C 0.07 0.61 6.84 37.21 0.25 0.86 16 22 O -0.40 -5.33 10.66 -59.04 -0.63 -5.96 16 23 C -0.21 -4.35 9.88 -26.73 -0.26 -4.62 16 24 C -0.15 -3.42 9.51 -26.73 -0.25 -3.67 16 25 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 26 H 0.07 1.78 8.14 -51.93 -0.42 1.35 16 27 H 0.04 0.82 7.95 -51.93 -0.41 0.41 16 28 H 0.40 7.65 7.47 -40.82 -0.30 7.35 16 29 H 0.40 5.51 8.37 -40.82 -0.34 5.16 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -32.58 344.12 -9.11 -41.69 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.50 Total: 10.25 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.01 Total: 0.11 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.55 Total: -48.74 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -1.31 Total: -23.61 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.58 -9.11 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797517830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.434 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds