Wall clock time and date at job start Tue Mar 31 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47209 * 300.00284 * 3 2 1 6 6 H 1.48498 * 109.47061 * 59.99820 * 3 2 1 7 7 C 1.37880 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00111 * 172.92324 * 7 2 1 9 9 C 1.50701 * 119.99952 * 352.91489 * 7 2 1 10 10 C 1.52995 * 115.54932 * 84.53683 * 9 7 2 11 11 N 1.46505 * 109.47192 * 39.68212 * 10 9 7 12 12 C 1.34778 * 120.00001 * 181.05009 * 11 10 9 13 13 O 1.21586 * 119.99865 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99653 * 180.02562 * 12 11 10 15 15 O 1.41599 * 119.99435 * 179.72150 * 14 12 11 16 16 C 1.42902 * 113.99638 * 180.27290 * 15 14 12 17 17 H 1.09002 * 109.48446 * 30.02492 * 16 15 14 18 18 C 1.53096 * 109.48163 * 150.05989 * 16 15 14 19 19 C 1.53178 * 109.16591 * 177.59279 * 18 16 15 20 20 C 1.53180 * 109.03153 * 303.01809 * 19 18 16 21 21 C 1.53094 * 109.16566 * 56.98436 * 20 19 18 22 22 O 1.42901 * 109.48048 * 270.00057 * 16 15 14 23 23 C 1.53007 * 117.51543 * 230.23951 * 9 7 2 24 24 C 1.53000 * 59.99888 * 107.48219 * 23 9 7 25 25 H 0.96993 * 120.00068 * 5.03387 * 1 2 3 26 26 H 1.08997 * 109.47246 * 279.67669 * 10 9 7 27 27 H 1.09004 * 109.47184 * 159.67546 * 10 9 7 28 28 H 0.97001 * 119.99514 * 1.04743 * 11 10 9 29 29 H 0.97003 * 120.00434 * 359.97438 * 14 12 11 30 30 H 1.09003 * 109.52153 * 297.49986 * 18 16 15 31 31 H 1.09000 * 109.52310 * 57.68426 * 18 16 15 32 32 H 1.09001 * 109.54320 * 183.15136 * 19 18 16 33 33 H 1.09002 * 109.61635 * 62.92799 * 19 18 16 34 34 H 1.09002 * 109.52520 * 297.07262 * 20 19 18 35 35 H 1.09004 * 109.57025 * 176.91621 * 20 19 18 36 36 H 1.08998 * 109.47976 * 182.40952 * 21 20 19 37 37 H 1.08991 * 109.49072 * 62.37522 * 21 20 19 38 38 H 1.09003 * 117.49381 * 214.96974 * 23 9 7 39 39 H 1.08994 * 117.50281 * 359.97438 * 23 9 7 40 40 H 1.09004 * 117.49753 * 252.50804 * 24 23 9 41 41 H 1.09000 * 117.52024 * 107.48342 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0783 -1.1976 -0.1158 9 6 1.2596 -2.4943 0.1599 10 6 0.6733 -3.0817 -1.1254 11 7 1.6222 -2.8936 -2.2256 12 6 1.3081 -3.3165 -3.4662 13 8 0.2374 -3.8545 -3.6721 14 7 2.1814 -3.1439 -4.4781 15 8 1.8538 -3.5935 -5.7803 16 6 2.8729 -3.3512 -6.7523 17 1 3.8492 -3.3709 -6.2681 18 6 2.8164 -4.4349 -7.8322 19 6 3.8715 -4.1349 -8.9014 20 6 3.6226 -2.7344 -9.4697 21 6 3.6480 -1.7163 -8.3266 22 8 2.6644 -2.0713 -7.3525 23 6 1.7704 -3.4759 1.2166 24 6 0.4721 -2.7022 1.4551 25 1 -0.4850 0.8367 -0.0737 26 1 -0.2626 -2.5758 -1.3622 27 1 0.4855 -4.1463 -0.9857 28 1 2.4766 -2.4647 -2.0611 29 1 3.0358 -2.7150 -4.3138 30 1 3.0190 -5.4074 -7.3834 31 1 1.8268 -4.4427 -8.2891 32 1 3.7993 -4.8714 -9.7017 33 1 4.8657 -4.1764 -8.4563 34 1 2.6493 -2.7077 -9.9597 35 1 4.4011 -2.4899 -10.1924 36 1 3.4290 -0.7234 -8.7192 37 1 4.6345 -1.7145 -7.8631 38 1 1.6887 -4.5402 0.9961 39 1 2.6456 -3.1816 1.7957 40 1 0.4931 -1.8987 2.1914 41 1 -0.4638 -3.2572 1.3915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797517830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:38 Heat of formation + Delta-G solvation = -72.447718 kcal Electronic energy + Delta-G solvation = -22640.289791 eV Core-core repulsion = 19136.336439 eV Total energy + Delta-G solvation = -3503.953352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00099 -40.42630 -38.58111 -37.69683 -35.03345 -34.74306 -33.97899 -33.14581 -30.91166 -27.86818 -26.97248 -25.71326 -24.40719 -22.91802 -22.32945 -21.35408 -21.14772 -19.81199 -19.10718 -17.88782 -17.79386 -17.21212 -16.69446 -16.39977 -16.27815 -15.84806 -15.58754 -15.34762 -14.88138 -14.50727 -14.43953 -14.24531 -13.95650 -13.76066 -13.47800 -13.45486 -12.90912 -12.81798 -12.41255 -12.28945 -12.12742 -11.97296 -11.96233 -11.55836 -11.38559 -11.32918 -10.81144 -10.60290 -10.44815 -10.33464 -10.01699 -9.59130 -8.07142 -6.20913 0.51829 1.43541 1.48031 1.56566 2.16228 2.44098 2.49549 3.00597 3.23246 3.49820 3.56194 3.62695 3.72658 3.91033 3.95116 4.14395 4.29741 4.38854 4.57073 4.57677 4.71827 4.73024 4.76621 4.80173 4.96899 5.02748 5.04482 5.07229 5.09861 5.29979 5.31095 5.48303 5.59159 5.65974 5.70127 5.80158 5.94116 6.22558 6.40224 6.87674 7.13000 7.49464 7.62971 9.00460 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.003871 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.086179 B = 7231.592672 C = 8200.732337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.029 3.971 3 Si 0.948 3.052 4 H -0.256 1.256 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.004 3.996 10 C 0.199 3.801 11 N -0.695 5.695 12 C 0.713 3.287 13 O -0.636 6.636 14 N -0.601 5.601 15 O -0.137 6.137 16 C 0.221 3.779 17 H 0.095 0.905 18 C -0.136 4.136 19 C -0.112 4.112 20 C -0.158 4.158 21 C 0.059 3.941 22 O -0.431 6.431 23 C -0.177 4.177 24 C -0.162 4.162 25 H 0.257 0.743 26 H 0.026 0.974 27 H 0.044 0.956 28 H 0.411 0.589 29 H 0.421 0.579 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.620 -5.935 -15.891 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.172 4.172 3 Si 0.774 3.226 4 H -0.180 1.180 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.541 4.541 8 H 0.088 0.912 9 C 0.003 3.997 10 C 0.074 3.926 11 N -0.353 5.353 12 C 0.414 3.586 13 O -0.517 6.517 14 N -0.309 5.309 15 O -0.140 6.140 16 C 0.124 3.876 17 H 0.112 0.888 18 C -0.175 4.175 19 C -0.150 4.150 20 C -0.196 4.196 21 C -0.016 4.016 22 O -0.354 6.354 23 C -0.214 4.214 24 C -0.200 4.200 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.249 0.751 29 H 0.264 0.736 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.178 -6.278 -16.016 21.076 hybrid contribution 0.681 1.521 0.086 1.669 sum 12.858 -4.756 -15.930 21.017 Atomic orbital electron populations 1.70119 1.07454 1.27190 1.49408 1.25691 0.95288 1.01997 0.94227 0.85668 0.79791 0.80220 0.76893 1.17983 1.21707 1.21477 1.20631 0.93358 0.89166 1.50991 0.91192 1.19096 0.99579 0.94765 0.86245 1.20486 0.90158 0.96627 0.85293 1.44743 1.22702 1.63029 1.04789 1.15634 0.82855 0.79763 0.80395 1.90844 1.25431 1.51718 1.83698 1.45991 1.20685 1.66792 0.97386 1.90626 1.41371 1.76315 1.05655 1.23802 0.90878 0.85508 0.87383 0.88811 1.22128 1.02041 0.97716 0.95656 1.21627 0.98103 0.97586 0.97651 1.22260 1.03719 0.95078 0.98496 1.22865 0.91272 0.99455 0.88045 1.87885 1.53753 1.36144 1.57595 1.23097 0.97184 0.96337 1.04810 1.22445 0.94114 1.01526 1.01910 0.93352 0.95566 0.93772 0.75124 0.73632 0.88769 0.91299 0.88753 0.89699 0.91760 0.87796 0.87813 0.91168 0.89168 0.89446 0.91764 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.84 12.97 21.45 0.28 -50.56 16 2 C 0.03 1.52 5.39 84.66 0.46 1.98 16 3 Si 0.95 41.13 29.55 68.60 2.03 43.16 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.50 -24.67 7.43 25.60 0.19 -24.48 16 8 H 0.07 3.24 7.82 -2.91 -0.02 3.22 16 9 C 0.00 0.18 1.71 -52.93 -0.09 0.09 16 10 C 0.20 9.25 5.75 86.38 0.50 9.74 16 11 N -0.69 -28.79 5.34 -478.53 -2.55 -31.34 16 12 C 0.71 30.84 8.71 179.05 1.56 32.40 16 13 O -0.64 -33.55 16.75 13.37 0.22 -33.33 16 14 N -0.60 -20.57 6.38 -184.75 -1.18 -21.75 16 15 O -0.14 -4.74 11.00 -9.59 -0.11 -4.85 16 16 C 0.22 5.23 3.44 72.01 0.25 5.47 16 17 H 0.09 1.69 7.83 -2.39 -0.02 1.67 16 18 C -0.14 -2.44 5.79 30.69 0.18 -2.26 16 19 C -0.11 -1.21 6.03 30.71 0.19 -1.02 16 20 C -0.16 -1.81 6.14 30.69 0.19 -1.62 16 21 C 0.06 0.92 6.84 72.01 0.49 1.41 16 22 O -0.43 -11.23 10.66 -126.21 -1.35 -12.58 16 23 C -0.18 -6.93 9.88 30.60 0.30 -6.63 16 24 C -0.16 -7.28 9.51 30.59 0.29 -6.99 16 25 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 26 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.96 7.95 -2.39 -0.02 1.94 16 28 H 0.41 15.21 7.47 -92.71 -0.69 14.51 16 29 H 0.42 10.89 8.37 -92.71 -0.78 10.11 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 3.12 8.08 -2.39 -0.02 3.10 16 39 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.06 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -71.59 344.12 1.41 -70.17 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.43 Total: 32.97 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 4.50 Total: 8.10 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -3.45 Total: -103.65 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -1.23 Total: -50.75 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -71.59 1.41 -70.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797517830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.274 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds