Wall clock time and date at job start Tue Mar 31 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00227 * 2 1 4 4 H 1.48495 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47064 * 300.00592 * 3 2 1 6 6 H 1.48507 * 109.46743 * 60.00429 * 3 2 1 7 7 C 1.37878 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00150 * 173.55324 * 7 2 1 9 9 C 1.50704 * 119.99692 * 353.54768 * 7 2 1 10 10 C 1.53004 * 115.54800 * 85.40961 * 9 7 2 11 11 N 1.46505 * 109.46861 * 65.13856 * 10 9 7 12 12 C 1.34781 * 119.99845 * 178.27938 * 11 10 9 13 13 O 1.21588 * 119.99952 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00112 * 180.02562 * 12 11 10 15 15 O 1.41594 * 120.00227 * 180.02562 * 14 12 11 16 16 C 1.42897 * 114.00440 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.48106 * 329.97939 * 16 15 14 18 18 C 1.53088 * 109.48366 * 209.94456 * 16 15 14 19 19 C 1.53179 * 109.16436 * 182.40581 * 18 16 15 20 20 C 1.53177 * 109.03451 * 56.98059 * 19 18 16 21 21 C 1.53091 * 109.16434 * 303.02001 * 20 19 18 22 22 O 1.42902 * 109.47971 * 89.99733 * 16 15 14 23 23 C 1.52998 * 117.50018 * 231.07602 * 9 7 2 24 24 C 1.52993 * 117.50176 * 299.74033 * 9 7 2 25 25 H 0.97003 * 119.99605 * 5.05143 * 1 2 3 26 26 H 1.08997 * 109.47241 * 305.14076 * 10 9 7 27 27 H 1.08996 * 109.47039 * 185.13395 * 10 9 7 28 28 H 0.97004 * 120.00425 * 358.28320 * 11 10 9 29 29 H 0.97004 * 119.99582 * 0.02562 * 14 12 11 30 30 H 1.09003 * 109.52115 * 302.31398 * 18 16 15 31 31 H 1.09000 * 109.52620 * 62.49898 * 18 16 15 32 32 H 1.08992 * 109.54186 * 297.11175 * 19 18 16 33 33 H 1.09003 * 109.61467 * 176.88776 * 19 18 16 34 34 H 1.09007 * 109.52197 * 183.11422 * 20 19 18 35 35 H 1.09002 * 109.57778 * 62.95547 * 20 19 18 36 36 H 1.09009 * 109.47592 * 297.62656 * 21 20 19 37 37 H 1.08994 * 109.48321 * 177.59486 * 21 20 19 38 38 H 1.08997 * 117.50181 * 215.00479 * 23 9 7 39 39 H 1.09007 * 117.49520 * 0.02782 * 23 9 7 40 40 H 1.09000 * 117.49593 * 359.97438 * 24 9 7 41 41 H 1.09000 * 117.49926 * 145.00089 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0794 -1.1970 -0.1055 9 6 1.2581 -2.4951 0.1456 10 6 0.7020 -3.0860 -1.1516 11 7 1.8111 -3.4584 -2.0334 12 6 1.5598 -4.0348 -3.2256 13 8 0.4127 -4.2452 -3.5694 14 7 2.5801 -4.3778 -4.0366 15 8 2.3162 -4.9828 -5.2893 16 6 3.4894 -5.2934 -6.0436 17 1 4.2760 -4.5781 -5.8032 18 6 3.1700 -5.2178 -7.5388 19 6 4.4155 -5.6103 -8.3396 20 6 4.8642 -7.0107 -7.9110 21 6 5.1182 -7.0170 -6.4013 22 8 3.9298 -6.6132 -5.7179 23 6 1.7470 -3.4738 1.2151 24 6 0.4417 -2.7016 1.4229 25 1 -0.4850 0.8368 -0.0740 26 1 0.0753 -2.3457 -1.6488 27 1 0.1075 -3.9703 -0.9224 28 1 2.7263 -3.2902 -1.7593 29 1 3.4953 -4.2102 -3.7621 30 1 2.3557 -5.9037 -7.7724 31 1 2.8761 -4.2006 -7.7977 32 1 5.2147 -4.8955 -8.1441 33 1 4.1805 -5.6125 -9.4040 34 1 5.7820 -7.2757 -8.4359 35 1 4.0849 -7.7337 -8.1522 36 1 5.9262 -6.3242 -6.1658 37 1 5.3965 -8.0218 -6.0837 38 1 1.6724 -4.5387 0.9947 39 1 2.6083 -3.1765 1.8134 40 1 0.4449 -1.8966 2.1578 41 1 -0.4915 -3.2585 1.3392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797517831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:42 Heat of formation + Delta-G solvation = -51.221022 kcal Electronic energy + Delta-G solvation = -22486.674638 eV Core-core repulsion = 18983.641745 eV Total energy + Delta-G solvation = -3503.032893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.90623 -39.10156 -37.00246 -36.30192 -34.05973 -33.33147 -32.03154 -31.84598 -29.98578 -26.13131 -25.20047 -24.83844 -23.63665 -21.29464 -20.99545 -20.26475 -19.40929 -18.58311 -17.63322 -16.89244 -16.36466 -16.02844 -15.15668 -14.93021 -14.88030 -14.59557 -14.45918 -14.01429 -13.56093 -13.44844 -13.19134 -13.07588 -12.73355 -12.59342 -11.78105 -11.70343 -11.57692 -11.44291 -11.39714 -11.02248 -10.91527 -10.69079 -10.52297 -10.25692 -9.93551 -9.71226 -9.51779 -8.96576 -8.78605 -8.49807 -8.27176 -8.01761 -6.07518 -4.16310 1.79326 3.24838 3.32428 3.33947 3.35421 3.79168 4.18881 4.34127 4.35539 4.38562 4.50753 4.55261 4.66977 4.84436 5.01868 5.17518 5.20624 5.30156 5.35997 5.38232 5.50127 5.61468 5.68521 5.86201 6.02731 6.35401 6.47119 6.60037 6.69853 6.71797 6.78626 7.06967 7.12195 7.23210 7.38159 7.45676 7.55167 7.81678 8.34116 8.57055 8.84604 9.18337 9.50524 11.00325 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.003380 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.899016 B = 8281.405531 C = 8765.148158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.027 3.973 10 C 0.185 3.815 11 N -0.710 5.710 12 C 0.715 3.285 13 O -0.583 6.583 14 N -0.618 5.618 15 O -0.105 6.105 16 C 0.229 3.771 17 H 0.070 0.930 18 C -0.139 4.139 19 C -0.118 4.118 20 C -0.161 4.161 21 C 0.070 3.930 22 O -0.397 6.397 23 C -0.211 4.211 24 C -0.146 4.146 25 H 0.262 0.738 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.397 0.603 29 H 0.402 0.598 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.125 -10.397 -13.120 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.026 3.974 10 C 0.062 3.938 11 N -0.367 5.367 12 C 0.416 3.584 13 O -0.459 6.459 14 N -0.325 5.325 15 O -0.107 6.107 16 C 0.132 3.868 17 H 0.087 0.913 18 C -0.178 4.178 19 C -0.156 4.156 20 C -0.199 4.199 21 C -0.007 4.007 22 O -0.319 6.319 23 C -0.248 4.248 24 C -0.184 4.184 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.231 0.769 29 H 0.241 0.759 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.547 -10.610 -13.312 20.026 hybrid contribution 1.644 1.190 -0.076 2.031 sum 12.192 -9.420 -13.387 20.411 Atomic orbital electron populations 1.69987 1.05875 1.26845 1.48161 1.24994 0.94804 0.98949 0.94309 0.86578 0.80108 0.83894 0.77633 1.19775 1.21061 1.20960 1.20370 0.92835 0.88585 1.52044 0.92149 1.19046 0.98777 0.93939 0.85657 1.20947 0.86237 0.96918 0.89721 1.44998 1.11722 1.63948 1.16001 1.15539 0.83622 0.79067 0.80212 1.90903 1.19376 1.60903 1.74751 1.46402 1.08582 1.66923 1.10641 1.90643 1.23624 1.78085 1.18369 1.23344 0.88069 0.84728 0.90653 0.91301 1.22055 0.99793 1.04282 0.91700 1.21595 0.96940 0.96727 1.00344 1.22267 1.02691 0.98006 0.96935 1.22553 0.86081 1.00878 0.91171 1.87918 1.43976 1.32836 1.67134 1.23034 0.98658 0.95755 1.07344 1.22496 0.92365 1.01067 1.02486 0.92856 0.90909 0.94368 0.76945 0.75859 0.89589 0.89469 0.91410 0.90401 0.90419 0.90583 0.92987 0.88352 0.91523 0.90362 0.89771 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.12 12.91 55.43 0.72 -23.40 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.50 -12.70 8.63 -34.44 -0.30 -13.00 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.62 1.38 -155.66 -0.21 0.41 16 10 C 0.18 4.25 5.50 -4.04 -0.02 4.23 16 11 N -0.71 -14.13 5.48 -65.22 -0.36 -14.49 16 12 C 0.72 14.84 8.71 -86.92 -0.76 14.08 16 13 O -0.58 -14.75 16.75 -12.86 -0.22 -14.97 16 14 N -0.62 -10.22 6.38 27.63 0.18 -10.04 16 15 O -0.11 -1.76 11.00 -42.00 -0.46 -2.23 16 16 C 0.23 2.73 3.44 37.20 0.13 2.85 16 17 H 0.07 0.68 7.83 -51.93 -0.41 0.27 16 18 C -0.14 -1.32 5.79 -26.59 -0.15 -1.47 16 19 C -0.12 -0.78 6.03 -26.55 -0.16 -0.94 16 20 C -0.16 -1.04 6.14 -26.59 -0.16 -1.20 16 21 C 0.07 0.55 6.84 37.20 0.25 0.80 16 22 O -0.40 -4.90 10.66 -59.04 -0.63 -5.53 16 23 C -0.21 -4.33 9.96 -26.69 -0.27 -4.60 16 24 C -0.15 -3.31 9.42 -26.70 -0.25 -3.56 16 25 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 26 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 27 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 28 H 0.40 6.94 8.38 -40.82 -0.34 6.60 16 29 H 0.40 5.07 8.37 -40.82 -0.34 4.73 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -32.69 345.92 -9.13 -41.82 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.55 Total: 8.86 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.00 Total: -0.56 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.53 Total: -47.94 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -1.31 Total: -22.72 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.69 -9.13 -41.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797517831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.400 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds